Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_F02
(201 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P22202|HSP74_YEAST Heat shock protein SSA4 125 2e-29
sp|P10591|HSP71_YEAST Heat shock protein SSA1 (Heat shock p... 125 3e-29
sp|P10592|HSP72_YEAST Heat shock protein SSA2 125 3e-29
sp|P09435|HSP73_YEAST Heat shock protein SSA3 125 4e-29
sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (He... 124 7e-29
sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (He... 124 7e-29
sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (He... 124 7e-29
sp|P19120|HSP7C_BOVIN Heat shock cognate 71 kDa protein (He... 124 7e-29
sp|P08418|HSP70_SCHMA Heat shock 70 kDa homolog protein (HS... 123 1e-28
sp|P08106|HSP70_CHICK Heat shock 70 kDa protein (HSP70) 123 1e-28
>sp|P22202|HSP74_YEAST Heat shock protein SSA4
Length = 642
Score = 125 bits (315), Expect = 2e-29
Identities = 61/66 (92%), Positives = 65/66 (98%)
Frame = +3
Query: 3 GKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKENKITITNDKGRLSKDDIE 182
GKFEL+GIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGK NKITITNDKGRLSK+DI+
Sbjct: 455 GKFELSGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKSNKITITNDKGRLSKEDID 514
Query: 183 RMVAEA 200
+MVAEA
Sbjct: 515 KMVAEA 520
>sp|P10591|HSP71_YEAST Heat shock protein SSA1 (Heat shock protein YG100)
Length = 642
Score = 125 bits (314), Expect = 3e-29
Identities = 60/66 (90%), Positives = 65/66 (98%)
Frame = +3
Query: 3 GKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKENKITITNDKGRLSKDDIE 182
GKFEL+GIPPAPRGVPQIEVTFD+D+NGILNVSAVEKGTGK NKITITNDKGRLSK+DIE
Sbjct: 454 GKFELSGIPPAPRGVPQIEVTFDVDSNGILNVSAVEKGTGKSNKITITNDKGRLSKEDIE 513
Query: 183 RMVAEA 200
+MVAEA
Sbjct: 514 KMVAEA 519
>sp|P10592|HSP72_YEAST Heat shock protein SSA2
Length = 639
Score = 125 bits (314), Expect = 3e-29
Identities = 60/66 (90%), Positives = 65/66 (98%)
Frame = +3
Query: 3 GKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKENKITITNDKGRLSKDDIE 182
GKFEL+GIPPAPRGVPQIEVTFD+D+NGILNVSAVEKGTGK NKITITNDKGRLSK+DIE
Sbjct: 454 GKFELSGIPPAPRGVPQIEVTFDVDSNGILNVSAVEKGTGKSNKITITNDKGRLSKEDIE 513
Query: 183 RMVAEA 200
+MVAEA
Sbjct: 514 KMVAEA 519
>sp|P09435|HSP73_YEAST Heat shock protein SSA3
Length = 649
Score = 125 bits (313), Expect = 4e-29
Identities = 60/66 (90%), Positives = 65/66 (98%)
Frame = +3
Query: 3 GKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKENKITITNDKGRLSKDDIE 182
GKFEL+GIPPAPRGVPQI+VTFDIDANGILNVSA+EKGTGK NKITITNDKGRLSKDDI+
Sbjct: 455 GKFELSGIPPAPRGVPQIDVTFDIDANGILNVSALEKGTGKSNKITITNDKGRLSKDDID 514
Query: 183 RMVAEA 200
RMV+EA
Sbjct: 515 RMVSEA 520
>sp|P11142|HSP7C_HUMAN Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|Q71U34|HSP7C_SAGOE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
(Intracellular vitamin D binding protein 1)
Length = 646
Score = 124 bits (311), Expect = 7e-29
Identities = 61/66 (92%), Positives = 63/66 (95%)
Frame = +3
Query: 3 GKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKENKITITNDKGRLSKDDIE 182
GKFEL GIPPAPRGVPQIEVTFDIDANGILNVSAV+K TGKENKITITNDKGRLSK+DIE
Sbjct: 457 GKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIE 516
Query: 183 RMVAEA 200
RMV EA
Sbjct: 517 RMVQEA 522
>sp|P63017|HSP7C_MOUSE Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
sp|P63018|HSP7C_RAT Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 124 bits (311), Expect = 7e-29
Identities = 61/66 (92%), Positives = 63/66 (95%)
Frame = +3
Query: 3 GKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKENKITITNDKGRLSKDDIE 182
GKFEL GIPPAPRGVPQIEVTFDIDANGILNVSAV+K TGKENKITITNDKGRLSK+DIE
Sbjct: 457 GKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIE 516
Query: 183 RMVAEA 200
RMV EA
Sbjct: 517 RMVQEA 522
>sp|P19378|HSP7C_CRIGR Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 646
Score = 124 bits (311), Expect = 7e-29
Identities = 61/66 (92%), Positives = 63/66 (95%)
Frame = +3
Query: 3 GKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKENKITITNDKGRLSKDDIE 182
GKFEL GIPPAPRGVPQIEVTFDIDANGILNVSAV+K TGKENKITITNDKGRLSK+DIE
Sbjct: 457 GKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIE 516
Query: 183 RMVAEA 200
RMV EA
Sbjct: 517 RMVQEA 522
>sp|P19120|HSP7C_BOVIN Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8)
Length = 650
Score = 124 bits (311), Expect = 7e-29
Identities = 61/66 (92%), Positives = 63/66 (95%)
Frame = +3
Query: 3 GKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKENKITITNDKGRLSKDDIE 182
GKFEL GIPPAPRGVPQIEVTFDIDANGILNVSAV+K TGKENKITITNDKGRLSK+DIE
Sbjct: 457 GKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIE 516
Query: 183 RMVAEA 200
RMV EA
Sbjct: 517 RMVQEA 522
>sp|P08418|HSP70_SCHMA Heat shock 70 kDa homolog protein (HSP70) (Major surface antigen)
Length = 637
Score = 123 bits (309), Expect = 1e-28
Identities = 59/66 (89%), Positives = 65/66 (98%)
Frame = +3
Query: 3 GKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKENKITITNDKGRLSKDDIE 182
GKFEL+GIPPAPRG PQIEVTFDIDANGILNVSAV+KGTGK+NKITITNDKGRLSK++IE
Sbjct: 455 GKFELSGIPPAPRGTPQIEVTFDIDANGILNVSAVDKGTGKQNKITITNDKGRLSKEEIE 514
Query: 183 RMVAEA 200
RMVA+A
Sbjct: 515 RMVADA 520
>sp|P08106|HSP70_CHICK Heat shock 70 kDa protein (HSP70)
Length = 634
Score = 123 bits (309), Expect = 1e-28
Identities = 60/66 (90%), Positives = 63/66 (95%)
Frame = +3
Query: 3 GKFELAGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKENKITITNDKGRLSKDDIE 182
GKF+L GIPPAPRGVPQIEVTFDIDANGILNVSAV+K TGKENKITITNDKGRLSKDDI+
Sbjct: 460 GKFDLTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKDDID 519
Query: 183 RMVAEA 200
RMV EA
Sbjct: 520 RMVQEA 525
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,831,013
Number of Sequences: 369166
Number of extensions: 266577
Number of successful extensions: 1578
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1529
length of database: 68,354,980
effective HSP length: 38
effective length of database: 61,335,050
effective search space used: 1717381400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)