Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_E24
(651 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9R1P1|PSB3_MOUSE Proteasome subunit beta type 3 (Protea... 261 1e-69
sp|P40112|PSB3_RAT Proteasome subunit beta type 3 (Proteaso... 261 1e-69
sp|P49720|PSB3_HUMAN Proteasome subunit beta type 3 (Protea... 260 2e-69
sp|Q9XYN7|PSB3_DROME Proteasome subunit beta type 3 (20S pr... 260 2e-69
sp|O73817|PSB3_ONCMY Proteasome subunit beta type 3 (Protea... 254 1e-67
sp|Q9LST7|PSB3_ORYSA Proteasome subunit beta type 3 (20S pr... 211 1e-54
sp|O65084|PSB3_PICMA Proteasome subunit beta type 3 (20S pr... 211 1e-54
sp|Q23237|PSB3_CAEEL Proteasome subunit beta type 3 (Protea... 211 2e-54
sp|O81153|PSB3B_ARATH Proteasome subunit beta type 3-B (20S... 209 4e-54
sp|Q9XI05|PSB3A_ARATH Proteasome subunit beta type 3-A (20S... 209 4e-54
>sp|Q9R1P1|PSB3_MOUSE Proteasome subunit beta type 3 (Proteasome theta chain) (Proteasome
chain 13) (Proteasome component C10-II)
Length = 205
Score = 261 bits (667), Expect = 1e-69
Identities = 122/205 (59%), Positives = 162/205 (79%)
Frame = +2
Query: 2 MSILSYNGSAVIAMKGKDCVAIATDLRFGIQLQTISTDFTKVTQFGERLFVGFPGLATDR 181
MSI+SYNG AV+AMKGK+CVAIA D RFGIQ Q ++TDF K+ G+RL++G GLATD
Sbjct: 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 182 GTVAERLMFQKNLFELNENKKMRPQTLSHMLSYLLYQKRFSPYFVEPVVAGIDPITGGTF 361
TVA+RL F+ NL+EL E ++++P TL M++ LLY+KRF PY+ EPV+AG+DP T F
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 362 IGGMDLIGCPMESNDFIVSGTCKEQMFGMCETLWEENMDSKQLFECISQALLSSLDRDCS 541
I +DLIGCPM ++DF+VSGTC EQM+GMCE+LWE NMD + LFE ISQA+L+++DRD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 542 SGWGVRVYLVEKEQVTISDVKTRMD 616
SG GV V+++EK+++T +K RMD
Sbjct: 181 SGMGVIVHVIEKDKITTRTLKARMD 205
>sp|P40112|PSB3_RAT Proteasome subunit beta type 3 (Proteasome theta chain) (Proteasome
chain 13) (Proteasome component C10-II)
Length = 205
Score = 261 bits (667), Expect = 1e-69
Identities = 121/205 (59%), Positives = 162/205 (79%)
Frame = +2
Query: 2 MSILSYNGSAVIAMKGKDCVAIATDLRFGIQLQTISTDFTKVTQFGERLFVGFPGLATDR 181
MS++SYNG AV+AMKGK+CVAIA D RFGIQ Q ++TDF K+ G+RL++G GLATD
Sbjct: 1 MSVMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 182 GTVAERLMFQKNLFELNENKKMRPQTLSHMLSYLLYQKRFSPYFVEPVVAGIDPITGGTF 361
TVA+RL F+ NL+EL E ++++P TL M++ LLY+KRF PY+ EPV+AG+DP T F
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 362 IGGMDLIGCPMESNDFIVSGTCKEQMFGMCETLWEENMDSKQLFECISQALLSSLDRDCS 541
I +DLIGCPM ++DF+VSGTC EQM+GMCE+LWE NMD + LFE ISQA+L+++DRD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 542 SGWGVRVYLVEKEQVTISDVKTRMD 616
SG GV V+++EK+++T +K RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>sp|P49720|PSB3_HUMAN Proteasome subunit beta type 3 (Proteasome theta chain) (Proteasome
chain 13) (Proteasome component C10-II)
Length = 205
Score = 260 bits (665), Expect = 2e-69
Identities = 122/205 (59%), Positives = 161/205 (78%)
Frame = +2
Query: 2 MSILSYNGSAVIAMKGKDCVAIATDLRFGIQLQTISTDFTKVTQFGERLFVGFPGLATDR 181
MSI+SYNG AV+AMKGK+CVAIA D RFGIQ Q ++TDF K+ G+RL++G GLATD
Sbjct: 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 182 GTVAERLMFQKNLFELNENKKMRPQTLSHMLSYLLYQKRFSPYFVEPVVAGIDPITGGTF 361
TVA+RL F+ NL+EL E ++++P TL M++ LLY+KRF PY+ EPV+AG+DP T F
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 362 IGGMDLIGCPMESNDFIVSGTCKEQMFGMCETLWEENMDSKQLFECISQALLSSLDRDCS 541
I +DLIGCPM ++DF+VSGTC EQM+GMCE+LWE NMD LFE ISQA+L+++DRD
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAV 180
Query: 542 SGWGVRVYLVEKEQVTISDVKTRMD 616
SG GV V+++EK+++T +K RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205
>sp|Q9XYN7|PSB3_DROME Proteasome subunit beta type 3 (20S proteasome subunit beta-3)
Length = 205
Score = 260 bits (665), Expect = 2e-69
Identities = 122/205 (59%), Positives = 158/205 (77%)
Frame = +2
Query: 2 MSILSYNGSAVIAMKGKDCVAIATDLRFGIQLQTISTDFTKVTQFGERLFVGFPGLATDR 181
MSIL+YNG V+AM+GKDCVAIATD RFGIQ QTISTDF KV G R+F+G GL TD
Sbjct: 1 MSILAYNGGCVVAMRGKDCVAIATDHRFGIQAQTISTDFKKVFHIGPRMFLGLTGLQTDI 60
Query: 182 GTVAERLMFQKNLFELNENKKMRPQTLSHMLSYLLYQKRFSPYFVEPVVAGIDPITGGTF 361
TV +RLMF+KNL+E EN++M P+ S M+S LY+ RF PYF+EPVVAG+DP T F
Sbjct: 61 LTVRDRLMFRKNLYETRENREMCPKPFSAMMSSFLYEHRFGPYFIEPVVAGLDPKTMEPF 120
Query: 362 IGGMDLIGCPMESNDFIVSGTCKEQMFGMCETLWEENMDSKQLFECISQALLSSLDRDCS 541
I MDLIGCP +DF+V+GTC EQ++GMCETLW+ +++ QLFE I+Q+++++ DRD
Sbjct: 121 ICNMDLIGCPNAPDDFVVAGTCAEQLYGMCETLWKPDLEPDQLFEVIAQSIVNAFDRDAM 180
Query: 542 SGWGVRVYLVEKEQVTISDVKTRMD 616
SGWG VY++EK+++T +KTRMD
Sbjct: 181 SGWGATVYIIEKDKITERTLKTRMD 205
>sp|O73817|PSB3_ONCMY Proteasome subunit beta type 3 (Proteasome theta chain) (Proteasome
chain 13) (Proteasome component C10-II)
Length = 205
Score = 254 bits (650), Expect = 1e-67
Identities = 117/205 (57%), Positives = 160/205 (78%)
Frame = +2
Query: 2 MSILSYNGSAVIAMKGKDCVAIATDLRFGIQLQTISTDFTKVTQFGERLFVGFPGLATDR 181
MSI+SYNG AV+AMKGK CVAIA D RFG+Q Q ++TDF K+ G+RL++G GLATD
Sbjct: 1 MSIMSYNGGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 182 GTVAERLMFQKNLFELNENKKMRPQTLSHMLSYLLYQKRFSPYFVEPVVAGIDPITGGTF 361
TV++RL F+ NL+EL E ++++P+T M+S LLY++RF PY++EPV+AG+DP T F
Sbjct: 61 QTVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPF 120
Query: 362 IGGMDLIGCPMESNDFIVSGTCKEQMFGMCETLWEENMDSKQLFECISQALLSSLDRDCS 541
I +DLIGCPM + DF+VSGTC EQM+GMCE+LWE +M+ + LFE ISQA+L+++DRD
Sbjct: 121 ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV 180
Query: 542 SGWGVRVYLVEKEQVTISDVKTRMD 616
SG GV V ++EK+++T +K RMD
Sbjct: 181 SGMGVVVQVIEKDKITTRTLKARMD 205
>sp|Q9LST7|PSB3_ORYSA Proteasome subunit beta type 3 (20S proteasome alpha subunit C)
(20S proteasome subunit beta-3)
Length = 204
Score = 211 bits (538), Expect = 1e-54
Identities = 104/205 (50%), Positives = 145/205 (70%)
Frame = +2
Query: 2 MSILSYNGSAVIAMKGKDCVAIATDLRFGIQLQTISTDFTKVTQFGERLFVGFPGLATDR 181
MSI YNGSAV+AM GK+C AIA+D R G+QLQT++TDF +V + ++L++G GLATD
Sbjct: 1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDA 60
Query: 182 GTVAERLMFQKNLFELNENKKMRPQTLSHMLSYLLYQKRFSPYFVEPVVAGIDPITGGTF 361
T+ +RL+F+ L++L E + M+PQT + ++S LLY+KRF PYF +PV+AG+ F
Sbjct: 61 QTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGE-DNEPF 119
Query: 362 IGGMDLIGCPMESNDFIVSGTCKEQMFGMCETLWEENMDSKQLFECISQALLSSLDRDCS 541
I MD IG + DF+VSGT E ++G CE++++ NM+ ++LFE ISQAL SS+DRDC
Sbjct: 120 ICTMDCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALQSSVDRDCL 179
Query: 542 SGWGVRVYLVEKEQVTISDVKTRMD 616
SGWG V LV +V +K RMD
Sbjct: 180 SGWGGFVLLVTPTEVKECVIKGRMD 204
>sp|O65084|PSB3_PICMA Proteasome subunit beta type 3 (20S proteasome alpha subunit C)
(20S proteasome subunit beta-3)
Length = 204
Score = 211 bits (538), Expect = 1e-54
Identities = 103/205 (50%), Positives = 145/205 (70%)
Frame = +2
Query: 2 MSILSYNGSAVIAMKGKDCVAIATDLRFGIQLQTISTDFTKVTQFGERLFVGFPGLATDR 181
MSI YNGSA++AM GK+C AIA+D R G+QLQTI+TDF ++ + ++L+VG GLATD
Sbjct: 1 MSIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDV 60
Query: 182 GTVAERLMFQKNLFELNENKKMRPQTLSHMLSYLLYQKRFSPYFVEPVVAGIDPITGGTF 361
T+ +R F+ L++L E + MRP+T + ++S LLY+KRF PYF +PV+AG+ F
Sbjct: 61 QTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGE-DDKPF 119
Query: 362 IGGMDLIGCPMESNDFIVSGTCKEQMFGMCETLWEENMDSKQLFECISQALLSSLDRDCS 541
I MD IG + DF+V+GT E ++G CE++++ +M+ ++LFE ISQALLSS+DRDC
Sbjct: 120 ICTMDSIGAKELAKDFVVAGTAAESLYGACESMYKPDMEPEELFETISQALLSSIDRDCL 179
Query: 542 SGWGVRVYLVEKEQVTISDVKTRMD 616
SGWG VY+V QV +K RMD
Sbjct: 180 SGWGGHVYVVSPNQVIERTLKGRMD 204
>sp|Q23237|PSB3_CAEEL Proteasome subunit beta type 3 (Proteasome subunit beta 3)
Length = 204
Score = 211 bits (536), Expect = 2e-54
Identities = 101/205 (49%), Positives = 139/205 (67%)
Frame = +2
Query: 2 MSILSYNGSAVIAMKGKDCVAIATDLRFGIQLQTISTDFTKVTQFGERLFVGFPGLATDR 181
MSI+SY G V+AM G +CV IA+DLR G Q+ TI+TD KV + ++++VG G +D
Sbjct: 1 MSIMSYTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDA 60
Query: 182 GTVAERLMFQKNLFELNENKKMRPQTLSHMLSYLLYQKRFSPYFVEPVVAGIDPITGGTF 361
TV E++MF+KNL+EL EN+ ++PQ LS M+S L YQ RF YF EP+VAG+D T +
Sbjct: 61 RTVLEKIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDD-TNKPY 119
Query: 362 IGGMDLIGCPMESNDFIVSGTCKEQMFGMCETLWEENMDSKQLFECISQALLSSLDRDCS 541
I MD IGC DF+ GT +E + G+CE W ENM +LFE +Q++LS L+RD +
Sbjct: 120 ICCMDTIGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAA 179
Query: 542 SGWGVRVYLVEKEQVTISDVKTRMD 616
SGWG VY + K++V +S +K RMD
Sbjct: 180 SGWGAVVYTITKDKVNVSTIKARMD 204
>sp|O81153|PSB3B_ARATH Proteasome subunit beta type 3-B (20S proteasome beta subunit C-2)
Length = 204
Score = 209 bits (533), Expect = 4e-54
Identities = 101/205 (49%), Positives = 147/205 (71%)
Frame = +2
Query: 2 MSILSYNGSAVIAMKGKDCVAIATDLRFGIQLQTISTDFTKVTQFGERLFVGFPGLATDR 181
MSI YNGSAV+AM GK+C AIA+D R G+QLQTI+TDF ++++ + LF+G GLATD
Sbjct: 1 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDV 60
Query: 182 GTVAERLMFQKNLFELNENKKMRPQTLSHMLSYLLYQKRFSPYFVEPVVAGIDPITGGTF 361
T+ +RL+F+ L++L E + M+P+T + ++S +LY+KRF P+ +PV+AG+ F
Sbjct: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGD-DNKPF 119
Query: 362 IGGMDLIGCPMESNDFIVSGTCKEQMFGMCETLWEENMDSKQLFECISQALLSSLDRDCS 541
I MD IG + DF+VSGT E ++G CE +++ +M++++LFE ISQALLSS+DRDC
Sbjct: 120 ICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCL 179
Query: 542 SGWGVRVYLVEKEQVTISDVKTRMD 616
SGWG VY+V ++V +K RMD
Sbjct: 180 SGWGGHVYVVTPKEVKERILKGRMD 204
>sp|Q9XI05|PSB3A_ARATH Proteasome subunit beta type 3-A (20S proteasome beta subunit C-1)
(Proteasome component T)
Length = 204
Score = 209 bits (533), Expect = 4e-54
Identities = 100/205 (48%), Positives = 146/205 (71%)
Frame = +2
Query: 2 MSILSYNGSAVIAMKGKDCVAIATDLRFGIQLQTISTDFTKVTQFGERLFVGFPGLATDR 181
M I YNGSAV+AM GK+C AIA+D R G+QLQTI+TDF ++++ +R+F+G GLATD
Sbjct: 1 MQIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDV 60
Query: 182 GTVAERLMFQKNLFELNENKKMRPQTLSHMLSYLLYQKRFSPYFVEPVVAGIDPITGGTF 361
T+ +RL+F+ L++L E + M+P+T + ++S +LY+KRF PY +PV+AG+ F
Sbjct: 61 QTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGD-DDKPF 119
Query: 362 IGGMDLIGCPMESNDFIVSGTCKEQMFGMCETLWEENMDSKQLFECISQALLSSLDRDCS 541
I MD IG + DF+VSGT E ++G CE +++ +M++++LFE ISQALLSS+DRDC
Sbjct: 120 ICTMDSIGAKELAKDFVVSGTASESLYGACEAMYKPDMEAEELFETISQALLSSVDRDCL 179
Query: 542 SGWGVRVYLVEKEQVTISDVKTRMD 616
SGWG VY+V ++ +K RMD
Sbjct: 180 SGWGGHVYIVTPTEIKERILKGRMD 204
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,285,678
Number of Sequences: 369166
Number of extensions: 1546087
Number of successful extensions: 4545
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4533
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5365037700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)