Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_E13
(700 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9QZ08|NAGK_MOUSE N-acetylglucosamine kinase (GlcNAc kin... 150 3e-36
sp|Q9UJ70|NAGK_HUMAN N-acetylglucosamine kinase (GlcNAc kin... 149 5e-36
sp|P20261|LIP1_CANRU Lipase 1 precursor 30 4.7
sp|Q9A5F0|PURL_CAUCR Phosphoribosylformylglycinamidine synt... 30 4.7
sp|Q6MUM4|KSGA_MYCMS Dimethyladenosine transferase (S-adeno... 30 6.1
sp|Q9KBM8|COBB_BACHD Cobyrinic acid A,C-diamide synthase 30 6.1
sp|P37889|FBLN2_MOUSE Fibulin-2 precursor 30 8.0
sp|Q8VC42|MIC1_MOUSE Protein C18orf8 homolog (Colon cancer-... 30 8.0
>sp|Q9QZ08|NAGK_MOUSE N-acetylglucosamine kinase (GlcNAc kinase)
Length = 343
Score = 150 bits (379), Expect = 3e-36
Identities = 78/214 (36%), Positives = 120/214 (56%), Gaps = 1/214 (0%)
Frame = +2
Query: 50 LGLSLSGIDTEAHTKLCIDAMLNIWKPGIDHIHVCNDTVGALRTGA-DAGIVLISGTGSN 226
LGLSLSG + E +L I+ + + + ++ + D G++ T D GIVLISGTGSN
Sbjct: 71 LGLSLSGGEQEDAVRLLIEELRHRFPNLSENYLITTDAAGSIATATPDGGIVLISGTGSN 130
Query: 227 CRLVHKDLTFHRVGGWGNLLGDEGSAYGIVNGGIKKIIDAEEGRIPMETPYSVFKEILFK 406
CRL++ D + GGWG+++GDEGSAY I + +K + D+ + K+ +F
Sbjct: 131 CRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGHVKQAMFD 190
Query: 407 YLKISDIYELIPLYYHNFDKALIANMCPLLAQAAENGDKFCIDLFYEAGYILARLVATMA 586
Y ++ D ++ Y +FDK A C +A+ A GD +F +AG +L R V +
Sbjct: 191 YFQVPDRLGILTHLYRDFDKCKFAGFCQKIAEGAHQGDPLSRYIFRKAGEMLGRHVVAVL 250
Query: 587 RHCEPAILENPEGLPVVCVGGVWGSWNLLESGFI 688
+P + + GLP++CVG VW SW LL+ GF+
Sbjct: 251 PEIDPVLFQGELGLPILCVGSVWKSWELLKEGFL 284
>sp|Q9UJ70|NAGK_HUMAN N-acetylglucosamine kinase (GlcNAc kinase)
Length = 344
Score = 149 bits (377), Expect = 5e-36
Identities = 76/214 (35%), Positives = 120/214 (56%), Gaps = 1/214 (0%)
Frame = +2
Query: 50 LGLSLSGIDTEAHTKLCIDAMLNIWKPGIDHIHVCNDTVGALRTGA-DAGIVLISGTGSN 226
LGLSLSG D E ++ I+ + + + + + D G++ T D G+VLISGTGSN
Sbjct: 71 LGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSN 130
Query: 227 CRLVHKDLTFHRVGGWGNLLGDEGSAYGIVNGGIKKIIDAEEGRIPMETPYSVFKEILFK 406
CRL++ D + GGWG+++GDEGSAY I + +K + D+ + K+ +F
Sbjct: 131 CRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFH 190
Query: 407 YLKISDIYELIPLYYHNFDKALIANMCPLLAQAAENGDKFCIDLFYEAGYILARLVATMA 586
Y ++ D ++ Y +FDK A C +A+ A+ GD +F +AG +L R + +
Sbjct: 191 YFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVL 250
Query: 587 RHCEPAILENPEGLPVVCVGGVWGSWNLLESGFI 688
+P + + GLP++CVG VW SW LL+ GF+
Sbjct: 251 PEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFL 284
>sp|P20261|LIP1_CANRU Lipase 1 precursor
Length = 549
Score = 30.4 bits (67), Expect = 4.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 233 LVHKDLTFHRVGGWGNLLGDEGSAYGIVNGGIK 331
++H + + RV WG L GDE A G N G+K
Sbjct: 164 IIHVSVNY-RVSSWGFLAGDEIKAEGSANAGLK 195
>sp|Q9A5F0|PURL_CAUCR Phosphoribosylformylglycinamidine synthase II (FGAM synthase II)
Length = 739
Score = 30.4 bits (67), Expect = 4.7
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = +2
Query: 146 HVCNDTVGALRTGADAGIVLISGTG 220
HV DT+ TG DAGIV I GTG
Sbjct: 429 HVMADTLEDSATGCDAGIVRIHGTG 453
>sp|Q6MUM4|KSGA_MYCMS Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase)
Length = 266
Score = 30.0 bits (66), Expect = 6.1
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 341 DAEEGRIPMETPYSVFKEILFKYLKISDI 427
D E+ I TPY + EILFK L+ISD+
Sbjct: 96 DYEKISIISNTPYYITSEILFKTLQISDL 124
>sp|Q9KBM8|COBB_BACHD Cobyrinic acid A,C-diamide synthase
Length = 465
Score = 30.0 bits (66), Expect = 6.1
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = +2
Query: 8 LIKGQRPVNSRINYLGLSLSGIDTEAHTKLCIDAM 112
++KG + +N ++ G+ L+G +E H ++C +A+
Sbjct: 132 VVKGFQQLNEKVKIAGVILNGAGSERHAEMCSEAI 166
>sp|P37889|FBLN2_MOUSE Fibulin-2 precursor
Length = 1221
Score = 29.6 bits (65), Expect = 8.0
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 68 GIDTEAHTKLCIDAMLNIWKPGIDHIHVCNDTVGALRTGADAGIVLISGTGSNCRLVHK 244
G +A + CID PG H C +T G+ R AG L++ G +C V++
Sbjct: 926 GFQRDAFGRTCIDVNECWVSPGRLCQHTCENTPGSYRCSCAAGF-LLAADGKHCEDVNE 983
>sp|Q8VC42|MIC1_MOUSE Protein C18orf8 homolog (Colon cancer-associated protein Mic1)
(Mic-1)
Length = 657
Score = 29.6 bits (65), Expect = 8.0
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Frame = -3
Query: 257 ERLNLYEQVCNCFQYH*SKQFPHQHLFAVLQQY------------HYKHEYDQFLVSRYL 114
++ ++Y QV + F + K+ PH+ + AVL +Y HY HE LV + L
Sbjct: 456 DQSDVYTQVLSPFVEN--KEMPHKFVIAVLMEYIRSLNQFQIPVQHYLHE----LVIKTL 509
Query: 113 TWHRYKVLCELLCQFH*VKD 54
H + Q+H + D
Sbjct: 510 VQHNLFYMLHQFLQYHVLSD 529
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,667,511
Number of Sequences: 369166
Number of extensions: 1819450
Number of successful extensions: 4464
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4460
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6073541875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)