Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_E09
(648 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7PLI2|NIPB_DROME Nipped-B protein (SCC2 homolog) 121 2e-27
sp|Q6KC79|NIPBL_HUMAN Nipped-B-like protein (Delangin) (SCC... 117 3e-26
sp|Q6KCD5|NPBL_MOUSE Nipped-B-like protein (Delangin homolo... 117 3e-26
sp|Q95XZ5|NPBL_CAEEL Nipped-B-like protein pqn-85 (Prion-li... 89 7e-18
sp|Q00333|NPBL_COPCI Rad9 protein (SCC2 homolog) 74 2e-13
sp|Q09725|MIS4_SCHPO Sister chromatid cohesion protein mis4... 63 6e-10
sp|P24408|RAB9A_CANFA Ras-related protein Rab-9A (Rab-9) 43 8e-04
sp|P51151|RAB9A_HUMAN Ras-related protein Rab-9A (Rab-9) 43 8e-04
sp|Q9R0M6|RAB9A_MOUSE Ras-related protein Rab-9A (Rab-9) (S... 43 8e-04
sp|Q99P75|RAB9A_RAT Ras-related protein Rab-9A (Rab-9) 43 8e-04
>sp|Q7PLI2|NIPB_DROME Nipped-B protein (SCC2 homolog)
Length = 2077
Score = 121 bits (303), Expect = 2e-27
Identities = 56/115 (48%), Positives = 83/115 (72%)
Frame = +2
Query: 251 LTVREATVDLIGKFLIQKPELLNQYYHVLVNRIVDTGTSVRKRVIKALWDICSSQNDFTN 430
++VREA VDL+GKF++ +L++QYY +L RI+DTG SVRKRVIK L DIC DF+
Sbjct: 1182 ISVREAAVDLVGKFVLSNQDLIDQYYDMLSTRILDTGVSVRKRVIKILRDICLEYPDFSK 1241
Query: 431 CAEVYAKIMKRMYDEESIKKLVNEVFNSIWFSPINDKDPVKLQQRIFSIADVIHS 595
E+ K+++R++DEE I+KLV EVF +WF+P D + +Q++I I DV+++
Sbjct: 1242 IPEICVKMIRRVHDEEGIQKLVTEVFMKMWFTPCTKNDKIGIQRKINHIIDVVNT 1296
>sp|Q6KC79|NIPBL_HUMAN Nipped-B-like protein (Delangin) (SCC2 homolog)
Length = 2804
Score = 117 bits (293), Expect = 3e-26
Identities = 55/112 (49%), Positives = 78/112 (69%)
Frame = +2
Query: 254 TVREATVDLIGKFLIQKPELLNQYYHVLVNRIVDTGTSVRKRVIKALWDICSSQNDFTNC 433
+VREA V+L+G+F++ +P+L QYY +L+ RI+DTG SVRKRVIK L DIC Q F
Sbjct: 1826 SVREAAVELLGRFVLCRPQLAEQYYDMLIERILDTGISVRKRVIKILRDICIEQPTFPKI 1885
Query: 434 AEVYAKIMKRMYDEESIKKLVNEVFNSIWFSPINDKDPVKLQQRIFSIADVI 589
E+ K+++R+ DEE IKKLVNE F +WF+P D + ++I +I DV+
Sbjct: 1886 TEMCVKMIRRVNDEEGIKKLVNETFQKLWFTPTPHNDKEAMTRKILNITDVV 1937
>sp|Q6KCD5|NPBL_MOUSE Nipped-B-like protein (Delangin homolog) (SCC2 homolog)
Length = 2798
Score = 117 bits (293), Expect = 3e-26
Identities = 55/112 (49%), Positives = 78/112 (69%)
Frame = +2
Query: 254 TVREATVDLIGKFLIQKPELLNQYYHVLVNRIVDTGTSVRKRVIKALWDICSSQNDFTNC 433
+VREA V+L+G+F++ +P+L QYY +L+ RI+DTG SVRKRVIK L DIC Q F
Sbjct: 1820 SVREAAVELLGRFVLCRPQLAEQYYDMLIERILDTGISVRKRVIKILRDICIEQPTFPKI 1879
Query: 434 AEVYAKIMKRMYDEESIKKLVNEVFNSIWFSPINDKDPVKLQQRIFSIADVI 589
E+ K+++R+ DEE IKKLVNE F +WF+P D + ++I +I DV+
Sbjct: 1880 TEMCVKMIRRVNDEEGIKKLVNETFQKLWFTPTPHNDKEAMTRKILNITDVV 1931
>sp|Q95XZ5|NPBL_CAEEL Nipped-B-like protein pqn-85 (Prion-like-(Q/n-rich)-domain-bearing
protein 85) (SCC2 homolog)
Length = 2203
Score = 89.4 bits (220), Expect = 7e-18
Identities = 39/95 (41%), Positives = 65/95 (68%)
Frame = +2
Query: 257 VREATVDLIGKFLIQKPELLNQYYHVLVNRIVDTGTSVRKRVIKALWDICSSQNDFTNCA 436
VRE+ V+LIG+F++ E + +YY + RI+DTG +VRKRVI+ + +IC F
Sbjct: 1364 VRESAVELIGRFVLYDEEYVRKYYSQIAERILDTGVAVRKRVIRIMREICEKFPTFEMIP 1423
Query: 437 EVYAKIMKRMYDEESIKKLVNEVFNSIWFSPINDK 541
++ A++++R+ DEE +KKLV E F ++WF P++ +
Sbjct: 1424 DMLARMIRRVTDEEGVKKLVFETFTTLWFQPVDTR 1458
>sp|Q00333|NPBL_COPCI Rad9 protein (SCC2 homolog)
Length = 2157
Score = 74.3 bits (181), Expect = 2e-13
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Frame = +2
Query: 257 VREATVDLIGKFLIQKPELLNQYYHVLVNRIVDTGTSVRKRVIKALWDICSSQNDFTNCA 436
VR+A V+LIGK++I PE+ YY + R+ DTG +VRKRVIK L +D
Sbjct: 1264 VRDAAVELIGKYMIDSPEVAGNYYQKIAERMADTGLAVRKRVIKLLKSYYGVIDDAQRKI 1323
Query: 437 EVYAKIMKRMYDE-ESIKKLVNEVFNSIWFSPINDKDPVKLQ 559
++ A+++ RM DE + +K L + +WF P+ +K++
Sbjct: 1324 DISARLVLRMVDEDDGVKDLAMKTLEELWFPPLPPPSGMKVK 1365
>sp|Q09725|MIS4_SCHPO Sister chromatid cohesion protein mis4 (SCC2 homolog)
Length = 1583
Score = 63.2 bits (152), Expect = 6e-10
Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Frame = +2
Query: 257 VREATVDLIGKFLIQKPELLNQYYHVLVNRIVDTGTSVRKRVIKALWDICSSQNDFTNCA 436
VR+ +DL+G +++ E + Q Y +++ I D T VRKR IK L ++ + D
Sbjct: 830 VRDTVLDLLGTYIMAYRETIPQIYGCIISGISDPSTIVRKRAIKQLCEVYEATEDLNIRV 889
Query: 437 EVYAKIMKRMYD-EESIKKLVNEVFNSIWFSPINDK 541
++ +K++ R D EE+I +L EV +WFSP +++
Sbjct: 890 DIASKLLTRSNDEEETISELSLEVLEKLWFSPASNE 925
>sp|P24408|RAB9A_CANFA Ras-related protein Rab-9A (Rab-9)
Length = 201
Score = 42.7 bits (99), Expect = 8e-04
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +1
Query: 175 IRAYFVALQLWDTAGQERFRSTAVSAYSSRGYC*FNWKIFDSKT 306
+ +FV +Q+WDTAGQERFRS Y C + + DS++
Sbjct: 51 VDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQS 94
>sp|P51151|RAB9A_HUMAN Ras-related protein Rab-9A (Rab-9)
Length = 201
Score = 42.7 bits (99), Expect = 8e-04
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +1
Query: 175 IRAYFVALQLWDTAGQERFRSTAVSAYSSRGYC*FNWKIFDSKT 306
+ +FV +Q+WDTAGQERFRS Y C + + DS++
Sbjct: 51 VDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQS 94
>sp|Q9R0M6|RAB9A_MOUSE Ras-related protein Rab-9A (Rab-9) (Sid 99)
Length = 201
Score = 42.7 bits (99), Expect = 8e-04
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +1
Query: 175 IRAYFVALQLWDTAGQERFRSTAVSAYSSRGYC*FNWKIFDSKT 306
+ +FV +Q+WDTAGQERFRS Y C + + DS++
Sbjct: 51 VDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQS 94
>sp|Q99P75|RAB9A_RAT Ras-related protein Rab-9A (Rab-9)
Length = 201
Score = 42.7 bits (99), Expect = 8e-04
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +1
Query: 175 IRAYFVALQLWDTAGQERFRSTAVSAYSSRGYC*FNWKIFDSKT 306
+ +FV +Q+WDTAGQERFRS Y C + + DS++
Sbjct: 51 VDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQS 94
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,911,669
Number of Sequences: 369166
Number of extensions: 1434081
Number of successful extensions: 4262
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4255
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5316264630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)