Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_E06
(632 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8KG15|RPOB_CHLTE DNA-directed RNA polymerase beta chain... 30 5.1
sp|P75472|Y308_MYCPN Hypothetical protein MPN308 (F10_orf565) 29 8.8
sp|Q9WVM4|ICMT_RAT Protein-S-isoprenylcysteine O-methyltran... 29 8.8
>sp|Q8KG15|RPOB_CHLTE DNA-directed RNA polymerase beta chain (RNAP beta subunit)
(Transcriptase beta chain) (RNA polymerase beta subunit)
Length = 1303
Score = 30.0 bits (66), Expect = 5.1
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -1
Query: 347 FLLDINKNIFHKINDTRNGIVTI*SRAV--LSIETVFGLFDVV 225
F DIN IF I+ +N +VT RA+ E + GLFD+V
Sbjct: 185 FQTDINNQIFVYIDQKKNFLVTALLRAIGFAKDEDILGLFDLV 227
>sp|P75472|Y308_MYCPN Hypothetical protein MPN308 (F10_orf565)
Length = 565
Score = 29.3 bits (64), Expect = 8.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 34 QMICSTINVNDYLSENELLVFFAQLITLICFFAIL 138
+ + T+ ND++ NEL++ LI ++ FFAI+
Sbjct: 494 ETVAHTVLGNDFIELNELVIGRVMLIVVLVFFAII 528
>sp|Q9WVM4|ICMT_RAT Protein-S-isoprenylcysteine O-methyltransferase (Isoprenylcysteine
carboxylmethyltransferase) (Prenylcysteine carboxyl
methyltransferase) (pcCMT) (Prenylated protein carboxyl
methyltransferase) (PPMT) (Farnesyl cysteine carboxyl
methyltransferase) (FCMT)
Length = 232
Score = 29.3 bits (64), Expect = 8.8
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 214 EELATTSNNPKTVSIDNTALDH 279
E L TT NNPK++S+D+ L+H
Sbjct: 55 EYLVTTVNNPKSLSLDSFLLNH 76
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,618,279
Number of Sequences: 369166
Number of extensions: 883094
Number of successful extensions: 2238
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2238
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5072399280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)