Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_E05
(395 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O57460|TLL1_BRARE Dorsal-ventral patterning tolloid-like... 30 2.3
sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33... 30 2.3
sp|Q8NC51|PAIRB_HUMAN Plasminogen activator inhibitor 1 RNA... 29 3.0
sp|Q37892|VG11_BPB03 LOWER COLLAR PROTEIN (LATE PROTEIN GP11) 29 3.0
sp|P39738|FLID_BACSU Flagellar hook-associated protein 2 (H... 29 3.0
sp|P30261|DPOD3_SCHPO DNA polymerase delta subunit 3 (Cell ... 29 3.9
sp|Q9M9W8|PLDP2_ARATH Phospholipase D p2 (AtPLDp2) (Phospho... 29 3.9
sp|Q9GLG4|SCG1_PIG Secretogranin-1 precursor (Secretogranin... 29 3.9
sp|P14922|SSN6_YEAST Glucose repression mediator protein 28 5.1
sp|P46821|MAP1B_HUMAN Microtubule-associated protein 1B (MA... 28 5.1
>sp|O57460|TLL1_BRARE Dorsal-ventral patterning tolloid-like protein 1 precursor (Mini
fin protein)
Length = 1022
Score = 29.6 bits (65), Expect = 2.3
Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 11/114 (9%)
Frame = +3
Query: 54 LLPKSISYLTTYGRPRKYPAGTN---------HSKVYRQMETTNVNKNDTVKQESYSVPT 206
LL K +TT G P++YP N ++ Q E + N+ K + V +
Sbjct: 630 LLTKLNGTITTPGWPKEYPPNKNCVWQVVAPTQYRISMQFEAFELEGNEVCKYDYVEVRS 689
Query: 207 RMKLRSSIDNEV--NVIVEKGNSLESNMNSPPKSHKKQTRKGPIFHKIKEEERC 362
+ S + + + E S +NM KS ++KG H +++ C
Sbjct: 690 GLSSDSKLHGKYCGTEVPEVITSQYNNMRIEFKSDNTVSKKGFKAHFFSDKDEC 743
>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 (WRKY DNA-binding protein 33)
Length = 512
Score = 29.6 bits (65), Expect = 2.3
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = +3
Query: 99 RKYPAGTNHSKVYRQMETTNVNKNDTVKQESYSVPTRMKLRSSIDNEVNVIVEKGNSLES 278
RK G N K ++ + N K + PT+ K+ S++ ++ IV KG S
Sbjct: 174 RKGEDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQITEIVYKG----S 229
Query: 279 NMNSPPKSHKKQTRKGPIFH 338
+ + P+S ++ + FH
Sbjct: 230 HNHPKPQSTRRSSSSSSTFH 249
>sp|Q8NC51|PAIRB_HUMAN Plasminogen activator inhibitor 1 RNA-binding protein (PAI1
RNA-binding protein 1) (PAI-RBP1) (SERPINE1 mRNA-binding
protein 1)
Length = 408
Score = 29.3 bits (64), Expect = 3.0
Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 5/109 (4%)
Frame = +3
Query: 57 LPKSISY----LTTYGRPRKYPAGTNHSKVYRQMETTNVNKNDTVKQESYSVPTRMKLRS 224
+ K ISY L + P G H V NK + V++ P M L
Sbjct: 238 IQKQISYNYSDLDQSNVTEETPEGEEHHPV-----ADTENKENEVEEVKEEGPKEMTL-- 290
Query: 225 SIDNEVNVIVEKGNS-LESNMNSPPKSHKKQTRKGPIFHKIKEEERCVE 368
+E I K + +E N+ P + Q +KG + HK K EE E
Sbjct: 291 ---DEWKAIQNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAE 336
>sp|Q37892|VG11_BPB03 LOWER COLLAR PROTEIN (LATE PROTEIN GP11)
Length = 293
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 99 RKYPAGTNHSKVYRQMETTNVNKNDTVKQESYSVPTRMKLRSSIDNEVNVIVEK 260
++ GTN+ + E+T +DTV ++ + T KL S I+N + I K
Sbjct: 201 KRNTTGTNNVTSSAESESTGSGTSDTVTTDNANTTTNDKLNSQINNVEDYIESK 254
>sp|P39738|FLID_BACSU Flagellar hook-associated protein 2 (HAP2) (Filament cap protein)
(Flagellar cap protein)
Length = 498
Score = 29.3 bits (64), Expect = 3.0
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 11/79 (13%)
Frame = +3
Query: 105 YPAGTNHSKVYRQMETTNVNKNDTVKQESYSV--------PTRMKLRSSID---NEVNVI 251
Y GTN E + N TV +YS+ P + + +D N++
Sbjct: 222 YKEGTNAKVTINGFEMEKLTNNFTVNGVTYSIKNTTAATGPVTTSVSTDVDGIYNQIKEF 281
Query: 252 VEKGNSLESNMNSPPKSHK 308
V+K N L ++N K K
Sbjct: 282 VDKYNELVDSLNEKLKEEK 300
>sp|P30261|DPOD3_SCHPO DNA polymerase delta subunit 3 (Cell division control protein 27)
Length = 372
Score = 28.9 bits (63), Expect = 3.9
Identities = 22/89 (24%), Positives = 40/89 (44%)
Frame = +3
Query: 93 RPRKYPAGTNHSKVYRQMETTNVNKNDTVKQESYSVPTRMKLRSSIDNEVNVIVEKGNSL 272
R K T+ ++ +T+ ++K DT E + K + N N +KGNS
Sbjct: 153 RVLKKAPSTHSPQLSVPSKTSTIDKTDTRSTE------KTKGKDIFSNARN---QKGNSS 203
Query: 273 ESNMNSPPKSHKKQTRKGPIFHKIKEEER 359
N +P ++HK++ P K+ E+ +
Sbjct: 204 RKNKKAPLENHKEKEPLLPKEEKLSEQAK 232
>sp|Q9M9W8|PLDP2_ARATH Phospholipase D p2 (AtPLDp2) (Phospholipase D2 PHOX and PX containing
domain) (Phospholipase D zeta 2) (PLDzeta2)
Length = 1039
Score = 28.9 bits (63), Expect = 3.9
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Frame = +3
Query: 42 INEVLLPKSISYLTTYGRPRKY-------PAGTNHSKVYRQMETTNVNKNDTVKQESYSV 200
+N +L PK+ Y++ YG R Y P T+ V+ ++ + D + S
Sbjct: 808 LNALLGPKTQDYISFYGL-RSYGRLFEDGPIATSQIYVHSKLMIVD----DRIAVIGSSN 862
Query: 201 PTRMKLRSSIDNEVNVIVEKGNSLESNMN 287
L S D+E+ V++E +ES+MN
Sbjct: 863 INDRSLLGSRDSEIGVVIEDKEFVESSMN 891
>sp|Q9GLG4|SCG1_PIG Secretogranin-1 precursor (Secretogranin I) (SgI) (Chromogranin B)
(CgB) [Contains: Peptide SR-17; Peptide HQ-34; Peptide
KR-11]
Length = 668
Score = 28.9 bits (63), Expect = 3.9
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 59 AQIDQLFNYIRETAKISSGYKSFQSLSPNGDN*CKQERHGE 181
A++DQL +Y +++A+ Y S + LSP ++ER G+
Sbjct: 594 AELDQLLHYRKKSAEFPDFYDSGEHLSPRHAAESEKERAGQ 634
>sp|P14922|SSN6_YEAST Glucose repression mediator protein
Length = 966
Score = 28.5 bits (62), Expect = 5.1
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 99 RKYPAGTNHSKVYRQMETTNVNKNDTV--KQESYSVPTRMKLRSSIDNEVNVIVEKGNSL 272
++Y G H+ V + ++ +N+T +Q ++++PT+ + E V +K NS
Sbjct: 683 KRYMEGAIHTLVDAAVSSSTHTENNTKSPRQPTHAIPTQAPATGITNAEPQVKKQKLNSP 742
Query: 273 ESNMN 287
SN+N
Sbjct: 743 NSNIN 747
>sp|P46821|MAP1B_HUMAN Microtubule-associated protein 1B (MAP 1B) [Contains: MAP1 light
chain LC1]
Length = 2468
Score = 28.5 bits (62), Expect = 5.1
Identities = 21/100 (21%), Positives = 40/100 (40%)
Frame = +3
Query: 60 PKSISYLTTYGRPRKYPAGTNHSKVYRQMETTNVNKNDTVKQESYSVPTRMKLRSSIDNE 239
PK+ T + P K + E +K+E P + +++ + E
Sbjct: 630 PKAAKEKTVKKETKVKPEDKKEEKEKPKKEVAKKEDKTPIKKEEK--PKKEEVKKEVKKE 687
Query: 240 VNVIVEKGNSLESNMNSPPKSHKKQTRKGPIFHKIKEEER 359
+ +K E +PPK KK+ +K ++K+EE+
Sbjct: 688 IKKEEKKEPKKEVKKETPPKEVKKEVKKEE-KKEVKKEEK 726
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,705,720
Number of Sequences: 369166
Number of extensions: 753075
Number of successful extensions: 2210
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2210
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)