Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_D18
(823 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 121 3e-27
sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock doma... 113 7e-25
sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain... 113 7e-25
sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock doma... 112 2e-24
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 111 2e-24
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 110 6e-24
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 108 1e-23
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 108 1e-23
sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmi... 108 2e-23
sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmi... 108 2e-23
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 121 bits (303), Expect = 3e-27
Identities = 56/108 (51%), Positives = 80/108 (74%), Gaps = 5/108 (4%)
Frame = +1
Query: 37 KNDEYEGNAPDSS-----KQKQVLHTAITGKVKWFNVKRGYGFVCRNDNQEDIFIHQSAI 201
K E E N PD K+K+++ + ++G VKWFNVK GYGF+ R+D +ED+F+HQ+AI
Sbjct: 6 KQPEVEENQPDQEQNEEQKEKKIIASQVSGTVKWFNVKSGYGFINRDDTKEDVFVHQTAI 65
Query: 202 VKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYA 345
VK+NP +SVG+GE++ FD+V+G KGNEAANV+ +G V+GS+YA
Sbjct: 66 VKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNVQGSKYA 113
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
3)
sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
Length = 361
Score = 113 bits (282), Expect = 7e-25
Identities = 57/108 (52%), Positives = 74/108 (68%), Gaps = 7/108 (6%)
Frame = +1
Query: 43 DEYEGNAPDSSK-------QKQVLHTAITGKVKWFNVKRGYGFVCRNDNQEDIFIHQSAI 201
D G AP SS +K+VL T + G VKWFNV+ GYGF+ RND +ED+F+HQ+AI
Sbjct: 56 DAAPGPAPASSAPAGGEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAI 115
Query: 202 VKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYA 345
K+NP +SVG+GE + FD+V+G KG EAANV+ DG V+GS YA
Sbjct: 116 KKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYA 163
>sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain protein A) (Muscle Y-box
protein YB2) (Y-box binding protein-A) (RYB-A)
Length = 361
Score = 113 bits (282), Expect = 7e-25
Identities = 57/108 (52%), Positives = 74/108 (68%), Gaps = 7/108 (6%)
Frame = +1
Query: 43 DEYEGNAPDSSK-------QKQVLHTAITGKVKWFNVKRGYGFVCRNDNQEDIFIHQSAI 201
D G AP SS +K+VL T + G VKWFNV+ GYGF+ RND +ED+F+HQ+AI
Sbjct: 56 DAAPGPAPASSAPAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAI 115
Query: 202 VKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYA 345
K+NP +SVG+GE + FD+V+G KG EAANV+ DG V+GS YA
Sbjct: 116 KKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYA 163
>sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock domain protein A) (Single-strand
DNA binding protein NF-GMB)
Length = 372
Score = 112 bits (279), Expect = 2e-24
Identities = 52/95 (54%), Positives = 69/95 (72%)
Frame = +1
Query: 61 APDSSKQKQVLHTAITGKVKWFNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVG 240
A +K+VL T + G VKWFNV+ GYGF+ RND +ED+F+HQ+AI K+NP +SVG
Sbjct: 77 AGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVG 136
Query: 241 EGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYA 345
+GE + FD+V+G KG EAANV+ DG V+GS YA
Sbjct: 137 DGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYA 171
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 111 bits (278), Expect = 2e-24
Identities = 54/105 (51%), Positives = 73/105 (69%), Gaps = 6/105 (5%)
Frame = +1
Query: 61 APDSSKQKQVLHTAITGKVKWFNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVG 240
AP + K+V+ T + G VKWFNV+ GYGF+ RND +ED+F+HQ+AI K+NP +SVG
Sbjct: 42 APPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVG 101
Query: 241 EGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYAL------RYP 357
+GE + FD+V+G KG EAANV+ G V+GS+YA RYP
Sbjct: 102 DGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYP 146
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 110 bits (274), Expect = 6e-24
Identities = 57/121 (47%), Positives = 78/121 (64%), Gaps = 10/121 (8%)
Frame = +1
Query: 25 TIKHKNDEYEGNAPDSSK----QKQVLHTAITGKVKWFNVKRGYGFVCRNDNQEDIFIHQ 192
T + + D EG A K+V+ T + G VKWFNV+ GYGF+ RND +ED+F+HQ
Sbjct: 7 TQQQQPDALEGKAGQEPAATVGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ 66
Query: 193 SAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYAL------RY 354
+AI K+NP +SVG+GE + FD+V+G KG EAANV+ +G V+GS+YA RY
Sbjct: 67 TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPEGVPVQGSKYAADRNHYRRY 126
Query: 355 P 357
P
Sbjct: 127 P 127
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 108 bits (271), Expect = 1e-23
Identities = 53/106 (50%), Positives = 73/106 (68%), Gaps = 6/106 (5%)
Frame = +1
Query: 58 NAPDSSKQKQVLHTAITGKVKWFNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPEHPRKSV 237
+A + K+V+ T + G VKWFNV+ GYGF+ RND +ED+F+HQ+AI K+NP +SV
Sbjct: 42 SAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSV 101
Query: 238 GEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYAL------RYP 357
G+GE + FD+V+G KG EAANV+ G V+GS+YA RYP
Sbjct: 102 GDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYP 147
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 108 bits (271), Expect = 1e-23
Identities = 53/106 (50%), Positives = 73/106 (68%), Gaps = 6/106 (5%)
Frame = +1
Query: 58 NAPDSSKQKQVLHTAITGKVKWFNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPEHPRKSV 237
+A + K+V+ T + G VKWFNV+ GYGF+ RND +ED+F+HQ+AI K+NP +SV
Sbjct: 44 SAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSV 103
Query: 238 GEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYAL------RYP 357
G+GE + FD+V+G KG EAANV+ G V+GS+YA RYP
Sbjct: 104 GDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYP 149
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
(mRNP3)
Length = 324
Score = 108 bits (269), Expect = 2e-23
Identities = 50/94 (53%), Positives = 69/94 (73%)
Frame = +1
Query: 64 PDSSKQKQVLHTAITGKVKWFNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGE 243
P + K++L T + G VKWFNV+ GYGF+ RND++ED+F+HQ+AI K+NP +SVG+
Sbjct: 29 PRNQINKKLLATQVQGTVKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGD 88
Query: 244 GEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYA 345
GE + FD+V+G KG EAANV+ G VKGS +A
Sbjct: 89 GETVEFDVVEGEKGAEAANVTGPGGVPVKGSRFA 122
>sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmic RNA-binding protein p56)
(mRNP4)
Length = 336
Score = 108 bits (269), Expect = 2e-23
Identities = 51/95 (53%), Positives = 68/95 (71%)
Frame = +1
Query: 61 APDSSKQKQVLHTAITGKVKWFNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVG 240
A + K+VL T + G VKWFNV+ GYGF+ RND +ED+F+HQ+AI K+NP +SVG
Sbjct: 28 AARNQANKKVLATQVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVG 87
Query: 241 EGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYA 345
+GE + FD+V+G KG EAANV+ G VKGS +A
Sbjct: 88 DGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRFA 122
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,875,810
Number of Sequences: 369166
Number of extensions: 1553860
Number of successful extensions: 4515
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4472
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7907893860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)