Planarian EST Database

Dr_sW_012_D12

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_012_D12
         (772 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8XVV4|TRMU_RALSO  Probable tRNA (5-methylaminomethyl-2-t...    30   9.5  

>sp|Q8XVV4|TRMU_RALSO Probable tRNA
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
          Length = 370

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 14/114 (12%)
 Frame = +1

Query: 34  DTKIKNFTSCYKDKVFLGFFFTGLQVNNTGKYTNTFPYISKCGREQNFLRCDDRPIV--- 204
           D +  NF + YKD+VF  F    L+  + G+  N  P +  C  E  F    D  +    
Sbjct: 66  DVEAVNFAAEYKDRVFADF----LREYSAGRTPN--PDV-LCNAEIKFKAFLDHAMALGA 118

Query: 205 -------YLQLKELNGNFVLIYAFNDSKLFFNFSPQDLFMH----PQLMRVYHP 333
                  Y +++E  G F L+ AF+ +K       Q  F+H     QL R   P
Sbjct: 119 DTIATGHYARVREAGGRFELLKAFDHTK------DQSYFLHRLNQAQLSRTLFP 166

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,161,852
Number of Sequences: 369166
Number of extensions: 1687901
Number of successful extensions: 3609
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3609
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7163732800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)