Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_D09
(803 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P33418|LOS1_YEAST Protein LOS1 32 2.7
sp|O51083|SECG_BORBU Probable protein-export membrane prote... 30 7.7
>sp|P33418|LOS1_YEAST Protein LOS1
Length = 1100
Score = 31.6 bits (70), Expect = 2.7
Identities = 26/93 (27%), Positives = 42/93 (45%)
Frame = +3
Query: 183 IIRFLKELLYFRIYLWRIYIRKVMWLS*QLIYRFSNMILSYGIFQKDKTSIEIKFIAYYT 362
++RFL ELL + +L I ++ L +LI + N I S + T + K++
Sbjct: 524 LVRFLNELLMMKDFLLAIDNEQIQILFMELIVKNYNFIFSTSANTANATDDDEKYLLILN 583
Query: 363 IVYYMFIILIKFINVELKR**YLLVSTNFLLIT 461
I F + K NV L+ + T FL +T
Sbjct: 584 IFMSSFAMFNKRENVRLRS---WYLFTRFLKLT 613
>sp|O51083|SECG_BORBU Probable protein-export membrane protein secG
Length = 125
Score = 30.0 bits (66), Expect = 7.7
Identities = 9/35 (25%), Positives = 22/35 (62%)
Frame = +3
Query: 300 SYGIFQKDKTSIEIKFIAYYTIVYYMFIILIKFIN 404
S IF +S+ +K ++ ++++F++L+ F+N
Sbjct: 46 SSSIFGAKSSSVAVKITGFFIALFFIFVVLLSFLN 80
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,361,630
Number of Sequences: 369166
Number of extensions: 1483505
Number of successful extensions: 2764
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2763
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7618580670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)