Planarian EST Database


Dr_sW_012_C24

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_012_C24
         (601 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P05214|TBA3_MOUSE  Tubulin alpha-3/alpha-7 chain (Alpha-t...   365   e-101
sp|Q8T6A5|TBA1_APLCA  Tubulin alpha-1 chain                       364   e-100
sp|P68369|TBA1_MOUSE  Tubulin alpha-1 chain (Alpha-tubulin 1...   363   e-100
sp|P02552|TBA1_CHICK  Tubulin alpha-1 chain                       363   e-100
sp|P41383|TBA2_PATVU  Tubulin alpha-2/alpha-4 chain               363   e-100
sp|P02550|TBA_PIG  Tubulin alpha chain                            362   e-100
sp|P18288|TBAT_ONCMY  Tubulin alpha chain, testis-specific        362   e-100
sp|P68361|TBA1_CRIGR  Tubulin alpha-1 chain (Alpha-tubulin 1...   362   e-100
sp|P06603|TBA1_DROME  Tubulin alpha-1 chain                       361   e-100
sp|P52273|TBA_BOMMO  Tubulin alpha chain                          361   e-100
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
           isotype M-alpha-3/7)
 sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
 sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
          Length = 450

 Score =  365 bits (937), Expect = e-101
 Identities = 174/175 (99%), Positives = 175/175 (100%)
 Frame = +2

Query: 2   HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 181
           HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP
Sbjct: 266 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 325

Query: 182 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 361
           KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA
Sbjct: 326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 385

Query: 362 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 526
           EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 386 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
          Length = 451

 Score =  364 bits (934), Expect = e-100
 Identities = 173/175 (98%), Positives = 175/175 (100%)
 Frame = +2

Query: 2   HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 181
           HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQ+VKCDPRHGKYMACCMLYRGDVVP
Sbjct: 266 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYRGDVVP 325

Query: 182 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 361
           KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA
Sbjct: 326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 385

Query: 362 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 526
           EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 386 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
           M-alpha-1)
 sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
 sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
 sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
          Length = 451

 Score =  363 bits (932), Expect = e-100
 Identities = 172/175 (98%), Positives = 175/175 (100%)
 Frame = +2

Query: 2   HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 181
           HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVP
Sbjct: 266 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVP 325

Query: 182 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 361
           KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA
Sbjct: 326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 385

Query: 362 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 526
           EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 386 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
          Length = 412

 Score =  363 bits (932), Expect = e-100
 Identities = 172/175 (98%), Positives = 175/175 (100%)
 Frame = +2

Query: 2   HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 181
           HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVP
Sbjct: 227 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVP 286

Query: 182 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 361
           KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA
Sbjct: 287 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 346

Query: 362 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 526
           EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 347 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 401
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
          Length = 452

 Score =  363 bits (931), Expect = e-100
 Identities = 172/175 (98%), Positives = 175/175 (100%)
 Frame = +2

Query: 2   HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 181
           HFPLATYAPVISAEKAYHEQL+VAEITNACFEPANQMVKCDPRHGKYM+CCMLYRGDVVP
Sbjct: 266 HFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLYRGDVVP 325

Query: 182 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 361
           KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA
Sbjct: 326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 385

Query: 362 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 526
           EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 386 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P02550|TBA_PIG Tubulin alpha chain
          Length = 451

 Score =  362 bits (929), Expect = e-100
 Identities = 171/175 (97%), Positives = 175/175 (100%)
 Frame = +2

Query: 2   HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 181
           HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVP
Sbjct: 266 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVP 325

Query: 182 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 361
           KDVNAAIATIKTKRTIQFVDWCPTGFKVGINY+PPTVVPGGDLAKVQRAVCMLSNTTAIA
Sbjct: 326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIA 385

Query: 362 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 526
           EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 386 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
          Length = 450

 Score =  362 bits (928), Expect = e-100
 Identities = 172/175 (98%), Positives = 173/175 (98%)
 Frame = +2

Query: 2   HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 181
           HFPL TYAPVISAEKAYHE LSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP
Sbjct: 266 HFPLVTYAPVISAEKAYHEMLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 325

Query: 182 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 361
           KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA
Sbjct: 326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 385

Query: 362 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 526
           EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 386 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
 sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
           K-alpha-1)
 sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
           M-alpha-2)
 sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
 sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
          Length = 451

 Score =  362 bits (928), Expect = e-100
 Identities = 171/175 (97%), Positives = 175/175 (100%)
 Frame = +2

Query: 2   HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 181
           HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVP
Sbjct: 266 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVP 325

Query: 182 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 361
           KDVNAAIATIKTKR+IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA
Sbjct: 326 KDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 385

Query: 362 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 526
           EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 386 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
          Length = 450

 Score =  361 bits (927), Expect = e-100
 Identities = 172/174 (98%), Positives = 173/174 (99%)
 Frame = +2

Query: 2   HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 181
           HFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP
Sbjct: 266 HFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 325

Query: 182 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 361
           KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA
Sbjct: 326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 385

Query: 362 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDS 523
           EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 386 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 439
>sp|P52273|TBA_BOMMO Tubulin alpha chain
          Length = 450

 Score =  361 bits (927), Expect = e-100
 Identities = 172/174 (98%), Positives = 173/174 (99%)
 Frame = +2

Query: 2   HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 181
           HFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP
Sbjct: 266 HFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 325

Query: 182 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 361
           KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA
Sbjct: 326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 385

Query: 362 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDS 523
           EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 386 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 439
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,804,541
Number of Sequences: 369166
Number of extensions: 1123149
Number of successful extensions: 3476
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3275
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4602033670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)