Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_C22
(814 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05933|CALM_SCHPO Calmodulin (CaM) 31 3.5
sp|Q9X017|RNH2_THEMA Ribonuclease HII (RNase HII) 31 3.5
sp|P53560|YTBQ_BACSU Hypothetical protein ytbQ 31 3.5
sp|P30792|PMGI_MAIZE 2,3-bisphosphoglycerate-independent ph... 31 4.6
sp|P40154|IES2_YEAST Ino eighty subunit 2 30 6.0
sp|Q8ZYE5|MOAA_PYRAE Probable molybdenum cofactor biosynthe... 30 6.0
sp|P59448|CARB_BUCBP Carbamoyl-phosphate synthase large cha... 30 6.0
sp|P96111|PYRB_THEMA Protein pyrBI [Includes: Aspartate car... 30 7.9
>sp|P05933|CALM_SCHPO Calmodulin (CaM)
Length = 150
Score = 31.2 bits (69), Expect = 3.5
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 398 DSETLLKFCIFDVDHADYIKEHDMEEILHSIGLDLSRSQARKLIAKG-TNKRGGVHYREL 574
+ E F +FD D YI ++ +L S+G LS+ + +I + T+ G ++Y E
Sbjct: 84 EEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEF 143
Query: 575 S 577
S
Sbjct: 144 S 144
>sp|Q9X017|RNH2_THEMA Ribonuclease HII (RNase HII)
Length = 238
Score = 31.2 bits (69), Expect = 3.5
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Frame = +2
Query: 8 KELSDKDKKRFERLYKL-----NESPAVPVHINKTAKNGKFDCQLVSLSTLLEYRSDDQK 172
K D+ F R+Y ++ A H+N+ KNG +S +LE +DD
Sbjct: 138 KVFRDRLMSEFHRMYPQFSFHKHKGYATKEHLNEIRKNGVLPIHRLSFEPVLELLTDDLL 197
Query: 173 ENTFEVSVFAEQFNEMI------QRDAAFKMYKTLLALP 271
FE + +E E I ++ F+ +T LP
Sbjct: 198 REFFEKGLISENRFERILNLLGARKSVVFRKERTNHNLP 236
>sp|P53560|YTBQ_BACSU Hypothetical protein ytbQ
Length = 253
Score = 31.2 bits (69), Expect = 3.5
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Frame = +2
Query: 389 IPLDSETLLKFCIFDV--DHADYIKEHDMEEILHSIGLDLSRSQA----RKLIAKGTNKR 550
IP D++ +L + D D + M ++ + L R+ A +KL+ +N
Sbjct: 56 IPKDTDAILNLLAVKIKYDIMDIAEFEKMTDVFYRASYYLCRAAAELGIQKLVFASSNHV 115
Query: 551 GGVHYRELSIEVDNDSICNDIELSKG--NKLKLMANDIGSTVYLDNKTNTM 697
V+ ++ + + +D LSK LKL + IG YL+NK + +
Sbjct: 116 TDVYEKDGRSLLGREITTSDYPLSKNLYGVLKLTSEQIGHLFYLENKLSVI 166
>sp|P30792|PMGI_MAIZE 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
(Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I)
Length = 559
Score = 30.8 bits (68), Expect = 4.6
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Frame = +2
Query: 425 IFDVDHADYIKEHDMEEILHSIGL-----DLSRSQARKLIAKGTNKRGG----VHYRELS 577
I+D D +YIKE LH IGL SR +L+ KG ++RG VH
Sbjct: 110 IYDGDGFNYIKESFESGTLHLIGLLSDGGVHSRLDQLQLLLKGVSERGAKKIRVHILTDG 169
Query: 578 IEVDNDSICNDIELSKGNKLKLMANDIGSTV 670
+V + S +E + + L+L A + + +
Sbjct: 170 RDVLDGSSIGFVETLENDLLELRAKGVDAQI 200
>sp|P40154|IES2_YEAST Ino eighty subunit 2
Length = 320
Score = 30.4 bits (67), Expect = 6.0
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 446 DYIKEHDMEEILHS--IGLDLSRSQARKLIAKGTNKRGGVHYRELSIEVDNDSICNDIEL 619
+YI + D E + + SR AR+ + KG + +ELS+EVD D + L
Sbjct: 22 EYIDDDDYTEDIDDQIVTAKSSRRTARRSVPKGVRTSKRIRDKELSVEVDEDYDEEEDVL 81
Query: 620 SKGNKLKL 643
S K L
Sbjct: 82 SPSKKRHL 89
>sp|Q8ZYE5|MOAA_PYRAE Probable molybdenum cofactor biosynthesis protein A
Length = 310
Score = 30.4 bits (67), Expect = 6.0
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +2
Query: 395 LDSETLLKFCIF---DVDHADYIKEHDMEEILHSIGLDLSRSQAR 520
L S+ LK CI+ VD YIK D+E +L+++ L+R + R
Sbjct: 259 LTSDGKLKTCIYADSSVDLMPYIKSRDVEGLLYAVRTALARREPR 303
>sp|P59448|CARB_BUCBP Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
synthetase ammonia chain)
Length = 1076
Score = 30.4 bits (67), Expect = 6.0
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 422 CIFDVDHADYIKEHDMEEILHSIGLDLSRSQARKLIAKGTNKRG 553
C+ D+D+ +K+H +E I +I + +++ RKL K NK G
Sbjct: 98 CVLDLDNHGILKKHKIEIIGATIN-SIKKAENRKLFEKSMNKIG 140
>sp|P96111|PYRB_THEMA Protein pyrBI [Includes: Aspartate carbamoyltransferase (Aspartate
transcarbamylase) (ATCase); Aspartate
carbamoyltransferase regulatory region]
Length = 527
Score = 30.0 bits (66), Expect = 7.9
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +2
Query: 92 KTAKNGKFDCQLVSLSTLLEYRSDDQKENTFEVSVFAEQFNEMIQRDAAFKMYKTLLALP 271
K KN K D + E+ + K+N FEV +F+ + Q+D A Y T L L
Sbjct: 199 KIFKNVKVDLVAPEELMMPEHYVEKMKKNGFEVRIFSSIREYLDQKDVAKIWYFTRLQLE 258
Query: 272 NLPEE 286
+ E+
Sbjct: 259 RMGED 263
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,627,174
Number of Sequences: 369166
Number of extensions: 1377790
Number of successful extensions: 4323
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4323
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7763237265
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)