Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_C13
(758 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50464|UNC97_CAEEL LIM protein unc-97 (Uncoordinated pro... 70 5e-12
sp|P48059|PINC_HUMAN Protein PINCH (Particularly interestin... 62 1e-09
sp|Q71FD7|FBLI1_MOUSE Filamin-binding LIM protein 1 (CSX-as... 59 2e-08
sp|Q5REN1|FBLI1_PONPY Filamin-binding LIM protein 1 58 3e-08
sp|Q8WUP2|FBLI1_HUMAN Filamin-binding LIM protein 1 (Filami... 58 3e-08
sp|Q9UGI8|TES_HUMAN Testin (TESS) 56 9e-08
sp|P47226|TES_MOUSE Testin (TES1/TES2) 54 5e-07
sp|Q62920|PDLI5_RAT PDZ and LIM domain protein 5 (Enigma ho... 54 5e-07
sp|Q96HC4|PDLI5_HUMAN PDZ and LIM domain protein 5 (Enigma ... 53 1e-06
sp|Q8CI51|PDLI5_MOUSE PDZ and LIM domain protein 5 (Enigma ... 53 1e-06
>sp|P50464|UNC97_CAEEL LIM protein unc-97 (Uncoordinated protein 97) (PINCH homolog)
Length = 348
Score = 70.5 bits (171), Expect = 5e-12
Identities = 41/117 (35%), Positives = 53/117 (45%)
Frame = +1
Query: 166 APTCSVCNTGIQGKFAIKVNNKMMHNTCFTCHYCKKLIKDYYQTDEKDRAICQDCVIKTN 345
+P C CN I G+ IK N H CF C C K + D RA+C++C +
Sbjct: 79 SPCCGKCNEFIVGR-VIKAMNASWHPGCFCCEICNKQLADVGFLRNAGRALCRECNEREK 137
Query: 346 GGENGVPSCAKCKKCIDEENFIPFWGVAFHEKCFRCAICGKCLIKRALRLMNGRLTC 516
+G C KC ID+ I F G +FH F+C C L A R +NG L C
Sbjct: 138 AAGHGRYVCHKCHAMIDDGQHIKFRGDSFHPYHFKCKRCNNEL-TTASREVNGELYC 193
Score = 43.5 bits (101), Expect = 6e-04
Identities = 41/167 (24%), Positives = 63/167 (37%), Gaps = 9/167 (5%)
Frame = +1
Query: 1 FQCSKCTIMIPEWYYTKNNKDAF------CHKCVENDQVTFDQPKSVEIVSSVTGDIYNP 162
+ C KC MI + + K D+F C +C N+ T + + E+ D
Sbjct: 144 YVCHKCHAMIDDGQHIKFRGDSFHPYHFKCKRC-NNELTTASREVNGELYCLRCHDTMG- 201
Query: 163 KAPTCSVCNTGIQGKFAIKVNNKMMHNTCFTCHYCKKLIKDYYQTDEKDRAICQDCVIKT 342
P C C+ I+ + I K H F C C+K + + K C+ K
Sbjct: 202 -IPICGACHRPIEER-VIAALGKHWHVEHFVCSVCEKPFLGHRHYERKGLPYCEQHFHKL 259
Query: 343 NGG---ENGVPSCAKCKKCIDEENFIPFWGVAFHEKCFRCAICGKCL 474
G + G P C + + + + W V KCF C+ C K L
Sbjct: 260 FGNLCFKCGDPCCGEVFQALQKT-----WCV----KCFSCSFCDKKL 297
Score = 34.7 bits (78), Expect = 0.29
Identities = 33/156 (21%), Positives = 49/156 (31%)
Frame = +1
Query: 1 FQCSKCTIMIPEWYYTKNNKDAFCHKCVENDQVTFDQPKSVEIVSSVTGDIYNPKAPTCS 180
F C C + + + +N A C +C E ++ C
Sbjct: 106 FCCEICNKQLADVGFLRNAGRALCRECNEREKAA------------------GHGRYVCH 147
Query: 181 VCNTGIQGKFAIKVNNKMMHNTCFTCHYCKKLIKDYYQTDEKDRAICQDCVIKTNGGENG 360
C+ I IK H F C C + + C C G
Sbjct: 148 KCHAMIDDGQHIKFRGDSFHPYHFKCKRCNNELTT-ASREVNGELYCLRC-----HDTMG 201
Query: 361 VPSCAKCKKCIDEENFIPFWGVAFHEKCFRCAICGK 468
+P C C + I EE I G +H + F C++C K
Sbjct: 202 IPICGACHRPI-EERVIAALGKHWHVEHFVCSVCEK 236
>sp|P48059|PINC_HUMAN Protein PINCH (Particularly interesting new Cys-His protein) (LIM
and senescent cell antigen-like domains 1)
Length = 325
Score = 62.4 bits (150), Expect = 1e-09
Identities = 40/117 (34%), Positives = 51/117 (43%)
Frame = +1
Query: 166 APTCSVCNTGIQGKFAIKVNNKMMHNTCFTCHYCKKLIKDYYQTDEKDRAICQDCVIKTN 345
AP C C I G+ IK N H CF C C++++ D R +C+ C +
Sbjct: 68 APCCHQCGEFIIGR-VIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREK 126
Query: 346 GGENGVPSCAKCKKCIDEENFIPFWGVAFHEKCFRCAICGKCLIKRALRLMNGRLTC 516
G C KC IDE+ I F +H F CA CGK L A R + G L C
Sbjct: 127 ARGLGKYICQKCHAIIDEQPLI-FKNDPYHPDHFNCANCGKELTADA-RELKGELYC 181
Score = 35.8 bits (81), Expect = 0.13
Identities = 24/98 (24%), Positives = 38/98 (38%)
Frame = +1
Query: 169 PTCSVCNTGIQGKFAIKVNNKMMHNTCFTCHYCKKLIKDYYQTDEKDRAICQDCVIKTNG 348
P C C I+G+ + K H F C C+K + + K A C+ T+
Sbjct: 191 PICGACRRPIEGR-VVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCE-----THY 244
Query: 349 GENGVPSCAKCKKCIDEENFIPFWGVAFHEKCFRCAIC 462
+ C C + I E + + A+ CF C+ C
Sbjct: 245 NQLFGDVCFHCNRVI-EGDVVSALNKAWCVNCFACSTC 281
>sp|Q71FD7|FBLI1_MOUSE Filamin-binding LIM protein 1 (CSX-associated LIM)
Length = 375
Score = 58.5 bits (140), Expect = 2e-08
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Frame = +1
Query: 175 CSVCNTGIQGK-FAIKVNNKMMHNTCFTCHYCKKLI--KDYYQTDEKDRAICQDCVIKTN 345
C C+ + + A++ + H CFTC C++ + + +YQ D R +C+ C T
Sbjct: 185 CGFCHKPVSpreLAVEAMKRQYHAQCFTCRTCRRQLAGQRFYQKD--GRPLCEPCYQDT- 241
Query: 346 GGENGVPSCAKCKKCIDEENFIPFWGVAFHEKCFRCAICGKCLIKRALRL 495
+ C KC + + +E+ I G AFH CF C C +C+ + L
Sbjct: 242 -----LEKCGKCGEVV-QEHVIRALGKAFHPPCFTCVTCARCISDESFAL 285
Score = 45.4 bits (106), Expect = 2e-04
Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 19/131 (14%)
Frame = +1
Query: 4 QCSKCTIMIPEWYYTKNNKDAF---------CHKCVENDQVTFDQPKSVEIVSSVTGDIY 156
+C KC ++ E K AF C +C+ ++ D V V+ D Y
Sbjct: 244 KCGKCGEVVQEHVIRALGK-AFHPPCFTCVTCARCISDESFALDSQNQVYCVA----DFY 298
Query: 157 NPKAPTCSVCNTGI---QGKFAIKVN--NKMMHNTCFTCHYCKKLIKDYYQTDE-----K 306
AP CS+C I GK A K+ + H C+ C C L+ TD+
Sbjct: 299 RKFAPVCSICENPIIPRDGKDAFKIECMGRNFHENCYRCEDCSVLL-SVEPTDQGCYPLN 357
Query: 307 DRAICQDCVIK 339
D C+ C +K
Sbjct: 358 DHLFCKPCHLK 368
Score = 42.0 bits (97), Expect = 0.002
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 6/113 (5%)
Frame = +1
Query: 154 YNPKAPTCSVCNTGIQGKFAIKVNNKMMHNTCFTCHYCKKLIKDY-YQTDEKDRAICQDC 330
Y C C +Q + I+ K H CFTC C + I D + D +++ C
Sbjct: 238 YQDTLEKCGKCGEVVQ-EHVIRALGKAFHPPCFTCVTCARCISDESFALDSQNQVYCVAD 296
Query: 331 VIKTNGGENGVPSCAKCKKCI----DEENF-IPFWGVAFHEKCFRCAICGKCL 474
+ P C+ C+ I ++ F I G FHE C+RC C L
Sbjct: 297 FYR-----KFAPVCSICENPIIPRDGKDAFKIECMGRNFHENCYRCEDCSVLL 344
>sp|Q5REN1|FBLI1_PONPY Filamin-binding LIM protein 1
Length = 375
Score = 57.8 bits (138), Expect = 3e-08
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Frame = +1
Query: 175 CSVCNTGIQGK-FAIKVNNKMMHNTCFTCHYCKKLI--KDYYQTDEKDRAICQDCVIKTN 345
C+ C+ + + A++ + H CFTC C++ + + +YQ D R +C+ C
Sbjct: 185 CAFCHKTVSpreLAVEAMKRQYHAQCFTCRTCRRQLAGQSFYQKD--GRPLCEPCY---- 238
Query: 346 GGENGVPSCAKCKKCIDEENFIPFWGVAFHEKCFRCAICGKCL 474
++ + C KC + + ++ I G AFH CF C C +C+
Sbjct: 239 --QDTLERCGKCGEVV-RDHIIRALGQAFHPSCFTCVTCARCI 278
Score = 41.2 bits (95), Expect = 0.003
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
Frame = +1
Query: 70 CHKCVENDQVTFDQPKSVEIVSSVTGDIYNPKAPTCSVCNTGI---QGKFAIKVN--NKM 234
C +C+ ++ V + D Y AP CS+C I GK A K+ +
Sbjct: 274 CARCIGDESFALGSQNEVYCLD----DFYRKFAPVCSICENPIIPRDGKDAFKIECMGRS 329
Query: 235 MHNTCFTCHYCKKLIKDYYQTDE-----KDRAICQDCVIK 339
H C+ C C+ L+ TD+ +R C+ C +K
Sbjct: 330 FHENCYRCEDCRILL-SVEPTDQGCYPLNNRLFCKPCHVK 368
>sp|Q8WUP2|FBLI1_HUMAN Filamin-binding LIM protein 1 (Filamin-binding LIM protein 1)
(FBLP-1) (Mitogen-inducible 2 interacting protein)
(MIG2-interacting protein) (Migfilin)
Length = 373
Score = 57.8 bits (138), Expect = 3e-08
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Frame = +1
Query: 175 CSVCN-TGIQGKFAIKVNNKMMHNTCFTCHYCKKLI--KDYYQTDEKDRAICQDCVIKTN 345
C+ C+ T + A++ + H CFTC C++ + + +YQ D R +C+ C
Sbjct: 183 CAFCHKTVFpreLAVEAMKRQYHAQCFTCRTCRRQLAGQSFYQKD--GRPLCEPCY---- 236
Query: 346 GGENGVPSCAKCKKCIDEENFIPFWGVAFHEKCFRCAICGKCL 474
++ + C KC + + ++ I G AFH CF C C +C+
Sbjct: 237 --QDTLERCGKCGEVV-RDHIIRALGQAFHPSCFTCVTCARCI 276
Score = 38.9 bits (89), Expect = 0.015
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 10/100 (10%)
Frame = +1
Query: 70 CHKCVENDQVTFDQPKSVEIVSSVTGDIYNPKAPTCSVCNTGI---QGKFAIKVN--NKM 234
C +C+ ++ V + D Y AP CS+C I GK A K+ +
Sbjct: 272 CARCIGDESFALGSQNEVYCLD----DFYRKFAPVCSICENPIIPRDGKDAFKIECMGRN 327
Query: 235 MHNTCFTCHYCKKLIKDYYQTDE-----KDRAICQDCVIK 339
H C+ C C+ L+ TD+ + C+ C +K
Sbjct: 328 FHENCYRCEDCRILL-SVEPTDQGCYPLNNHLFCKPCHVK 366
>sp|Q9UGI8|TES_HUMAN Testin (TESS)
Length = 421
Score = 56.2 bits (134), Expect = 9e-08
Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 5/181 (2%)
Frame = +1
Query: 1 FQCSKCTIMIPEWYYTKNNKDAFC--HKCVENDQVTFDQPKSVEIVSSVTGDIYNPKAPT 174
F CS C ++ + Y N+ +C H C + + P
Sbjct: 266 FVCSTCHELLVDMIYFWKNEKLYCGRHYC-------------------------DSEKPR 300
Query: 175 CSVCNTGIQGKFAIKVNNKMMHNTCFTCHYCKKLIKDYYQTDEKDRAICQDCVIKTNGGE 354
C+ C+ I + N+ H F C C ++ D+ +C+ C +K
Sbjct: 301 CAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVK----- 355
Query: 355 NGVPSCAKCKKCIDEE-NFIPFWGVAFHE--KCFRCAICGKCLIKRALRLMNGRLTCAGH 525
N C C ID E + + ++H +CF C+ C KCLI + + G + C+
Sbjct: 356 NHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVE 415
Query: 526 C 528
C
Sbjct: 416 C 416
>sp|P47226|TES_MOUSE Testin (TES1/TES2)
Length = 423
Score = 53.9 bits (128), Expect = 5e-07
Identities = 40/181 (22%), Positives = 66/181 (36%), Gaps = 5/181 (2%)
Frame = +1
Query: 1 FQCSKCTIMIPEWYYTKNNKDAFC--HKCVENDQVTFDQPKSVEIVSSVTGDIYNPKAPT 174
F CS C ++ + Y N +C H C + + P
Sbjct: 268 FICSTCGELLVDMIYFWKNGKLYCGRHYC-------------------------DSEKPR 302
Query: 175 CSVCNTGIQGKFAIKVNNKMMHNTCFTCHYCKKLIKDYYQTDEKDRAICQDCVIKTNGGE 354
C+ C+ I + N+ H F C C ++ D+ +C+ C +K
Sbjct: 303 CAGCDELIFSNEYTQAENQNWHLKHFCCFDCDHILAGKIYVMVTDKPVCKPCYVK----- 357
Query: 355 NGVPSCAKCKKCIDEE-NFIPFWGVAFHE--KCFRCAICGKCLIKRALRLMNGRLTCAGH 525
N C C ID E + + ++H +CF C+ C KCLI + + G + C+
Sbjct: 358 NHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVE 417
Query: 526 C 528
C
Sbjct: 418 C 418
Score = 35.8 bits (81), Expect = 0.13
Identities = 22/82 (26%), Positives = 32/82 (39%)
Frame = +1
Query: 280 KDYYQTDEKDRAICQDCVIKTNGGENGVPSCAKCKKCIDEENFIPFWGVAFHEKCFRCAI 459
KD +K + C C TN GE + + + + W H CF C+
Sbjct: 225 KDKSAESKKTQYSCYCCKHTTNEGEPAIYA--------ERAGYDKLW----HPACFICST 272
Query: 460 CGKCLIKRALRLMNGRLTCAGH 525
CG+ L+ NG+L C H
Sbjct: 273 CGELLVDMIYFWKNGKLYCGRH 294
>sp|Q62920|PDLI5_RAT PDZ and LIM domain protein 5 (Enigma homolog) (Enigma-like PDZ and
LIM domains protein)
Length = 591
Score = 53.9 bits (128), Expect = 5e-07
Identities = 34/118 (28%), Positives = 49/118 (41%)
Frame = +1
Query: 163 KAPTCSVCNTGIQGKFAIKVNNKMMHNTCFTCHYCKKLIKDYYQTDEKDRAICQDCVIKT 342
+ P C+ CN I+G F + + K H F C +CK + +EK C+ C K
Sbjct: 411 RTPMCAHCNQAIRGPFLVALG-KSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKF 469
Query: 343 NGGENGVPSCAKCKKCIDEENFIPFWGVAFHEKCFRCAICGKCLIKRALRLMNGRLTC 516
P C +C++ I E I +H CF C CGK + L +G C
Sbjct: 470 FA-----PECGRCQRKILGE-VINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYC 521
Score = 40.8 bits (94), Expect = 0.004
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 1/127 (0%)
Frame = +1
Query: 166 APTCSVCNTGIQGKFAIKVNNKMMHNTCFTCHYCKKLIKDYYQTDEKDRAICQDCVIKTN 345
AP C C I G+ I + H +CF C C K I++ E C+
Sbjct: 471 APECGRCQRKILGE-VINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDYYALF 529
Query: 346 GGENGVPSCAKCKKCIDE-ENFIPFWGVAFHEKCFRCAICGKCLIKRALRLMNGRLTCAG 522
G C C+ I+ + F+ G +H+ CF C++C + L + + C
Sbjct: 530 G-----TICRGCEFPIEAGDMFLEALGSTWHDTCFVCSVCCESLEGQTFFSKKDKPLCKK 584
Query: 523 HCIILKF 543
H + F
Sbjct: 585 HAHSVNF 591
Score = 30.4 bits (67), Expect = 5.4
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +1
Query: 148 DIYNPKAPTCSVCNTGIQ-GKFAIKVNNKMMHNTCFTCHYCKKLIKDYYQTDEKDRAICQ 324
D Y C C I+ G ++ H+TCF C C + ++ +KD+ +C+
Sbjct: 524 DYYALFGTICRGCEFPIEAGDMFLEALGSTWHDTCFVCSVCCESLEGQTFFSKKDKPLCK 583
>sp|Q96HC4|PDLI5_HUMAN PDZ and LIM domain protein 5 (Enigma homolog) (Enigma-like PDZ and
LIM domains protein)
Length = 596
Score = 52.8 bits (125), Expect = 1e-06
Identities = 34/118 (28%), Positives = 49/118 (41%)
Frame = +1
Query: 163 KAPTCSVCNTGIQGKFAIKVNNKMMHNTCFTCHYCKKLIKDYYQTDEKDRAICQDCVIKT 342
+ P C+ CN I+G F + + K H F C +CK + +EK C+ C K
Sbjct: 416 RTPMCAHCNQVIRGPFLVALG-KSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKF 474
Query: 343 NGGENGVPSCAKCKKCIDEENFIPFWGVAFHEKCFRCAICGKCLIKRALRLMNGRLTC 516
P C +C++ I E I +H CF C CGK + L +G C
Sbjct: 475 FA-----PECGRCQRKILGE-VINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYC 526
Score = 40.8 bits (94), Expect = 0.004
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 1/127 (0%)
Frame = +1
Query: 166 APTCSVCNTGIQGKFAIKVNNKMMHNTCFTCHYCKKLIKDYYQTDEKDRAICQDCVIKTN 345
AP C C I G+ I + H +CF C C K I++ E C+
Sbjct: 476 APECGRCQRKILGE-VINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDYYALF 534
Query: 346 GGENGVPSCAKCKKCIDE-ENFIPFWGVAFHEKCFRCAICGKCLIKRALRLMNGRLTCAG 522
G C C+ I+ + F+ G +H+ CF C++C + L + + C
Sbjct: 535 G-----TICHGCEFPIEAGDMFLEALGYTWHDTCFVCSVCCESLEGQTFFSKKDKPLCKK 589
Query: 523 HCIILKF 543
H + F
Sbjct: 590 HAHSVNF 596
Score = 29.6 bits (65), Expect = 9.2
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +1
Query: 148 DIYNPKAPTCSVCNTGIQ-GKFAIKVNNKMMHNTCFTCHYCKKLIKDYYQTDEKDRAICQ 324
D Y C C I+ G ++ H+TCF C C + ++ +KD+ +C+
Sbjct: 529 DYYALFGTICHGCEFPIEAGDMFLEALGYTWHDTCFVCSVCCESLEGQTFFSKKDKPLCK 588
>sp|Q8CI51|PDLI5_MOUSE PDZ and LIM domain protein 5 (Enigma homolog) (Enigma-like PDZ and
LIM domains protein)
Length = 591
Score = 52.8 bits (125), Expect = 1e-06
Identities = 34/118 (28%), Positives = 49/118 (41%)
Frame = +1
Query: 163 KAPTCSVCNTGIQGKFAIKVNNKMMHNTCFTCHYCKKLIKDYYQTDEKDRAICQDCVIKT 342
+ P C+ CN I+G F + + K H F C +CK + +EK C+ C K
Sbjct: 411 RTPMCAHCNQVIRGPFLVALG-KSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKF 469
Query: 343 NGGENGVPSCAKCKKCIDEENFIPFWGVAFHEKCFRCAICGKCLIKRALRLMNGRLTC 516
P C +C++ I E I +H CF C CGK + L +G C
Sbjct: 470 FA-----PECGRCQRKILGE-VINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYC 521
Score = 41.2 bits (95), Expect = 0.003
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 1/127 (0%)
Frame = +1
Query: 166 APTCSVCNTGIQGKFAIKVNNKMMHNTCFTCHYCKKLIKDYYQTDEKDRAICQDCVIKTN 345
AP C C I G+ I + H +CF C C K I++ E C+
Sbjct: 471 APECGRCQRKILGE-VINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYCETDYYALF 529
Query: 346 GGENGVPSCAKCKKCIDE-ENFIPFWGVAFHEKCFRCAICGKCLIKRALRLMNGRLTCAG 522
G C C+ I+ + F+ G +H+ CF C++C + L + + C
Sbjct: 530 G-----TICRGCEFPIEAGDMFLEALGYTWHDTCFVCSVCCESLEGQTFFSKKDKPLCKK 584
Query: 523 HCIILKF 543
H + F
Sbjct: 585 HAHSVNF 591
Score = 29.6 bits (65), Expect = 9.2
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +1
Query: 148 DIYNPKAPTCSVCNTGIQ-GKFAIKVNNKMMHNTCFTCHYCKKLIKDYYQTDEKDRAICQ 324
D Y C C I+ G ++ H+TCF C C + ++ +KD+ +C+
Sbjct: 524 DYYALFGTICRGCEFPIEAGDMFLEALGYTWHDTCFVCSVCCESLEGQTFFSKKDKPLCK 583
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,467,429
Number of Sequences: 369166
Number of extensions: 1601843
Number of successful extensions: 5905
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5658
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6970118400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)