Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_B10
(498 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02508|HGV2_HALRO Protein HGV2 59 5e-09
sp|P06180|HIBN_XENLA Histone-binding protein N1/N2 52 6e-07
sp|P22312|PU92_SCICO Puff II/9-2 protein precursor 38 0.012
sp|Q92JK8|CLPB_RICCN Chaperone clpB 36 0.044
sp|O58687|RAD50_PYRHO DNA double-strand break repair rad50 ... 32 0.83
sp|Q8RVB2|SPY_LYCES Probable UDP-N-acetylglucosamine--pepti... 32 0.83
sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--pepti... 32 0.83
sp|P21538|REB1_YEAST DNA-binding protein REB1 (QBP) 31 1.4
sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--pepti... 30 2.4
sp|Q9ZEA9|CLPB_RICPR Chaperone clpB 30 2.4
>sp|Q02508|HGV2_HALRO Protein HGV2
Length = 510
Score = 59.3 bits (142), Expect = 5e-09
Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 49/196 (25%)
Frame = +3
Query: 18 PEAIDQYKKALMLRQKHLDKLSRRIAESYYNLGVAFTVDMRPSEAVEAYEQCREILMK-- 191
P+AI + + L++++ L + R++AE+YYNLG+A++ + R A+E Y+ ++L
Sbjct: 277 PQAIGDFLECLVIQKDLLPETDRKLAETYYNLGLAYSFEKRYDNALEHYQSALDVLEARV 336
Query: 192 ------CQSFEGGSKAQ-----------ELAEIITDLDERIND----------------- 269
+S EG + + EL E+I D++ +I D
Sbjct: 337 DMLNELIESNEGNKEKEKEIISECKEVGELKELIPDINSKIEDVILAKKQMQKLDGSPFR 396
Query: 270 -CRDGERDYALAKES----------IKQFMMTAVSSSSQQPANDLTHLLRRTQNAPRSDR 416
+GE L + I++ T+V + P +D+THL+RR + +P D
Sbjct: 397 QASEGESSSGLGASTSDDKPCSTIPIRKVAPTSVPVAKDSP-SDITHLVRRKRPSPDEDN 455
Query: 417 --PDNDEPPSSKRKLE 458
++ E S K K E
Sbjct: 456 QPAESKENESKKAKQE 471
>sp|P06180|HIBN_XENLA Histone-binding protein N1/N2
Length = 590
Score = 52.4 bits (124), Expect = 6e-07
Identities = 26/132 (19%), Positives = 69/132 (52%), Gaps = 14/132 (10%)
Frame = +3
Query: 3 EEDVIPEAIDQYKKALMLRQKHLDKLSRRIAESYYNLGVAFTVDMRPSEAVEAYEQCREI 182
E + +A++ + L ++++HL++ R +AE++Y+LG+A+ + EA+ + Q +
Sbjct: 369 ESENYSQAVEDFLACLNIQKEHLEEHDRLLAETHYHLGLAYQYSSKHEEAISHFTQSIGV 428
Query: 183 LMKCQSF--------------EGGSKAQELAEIITDLDERINDCRDGERDYALAKESIKQ 320
+ K E + EL +++ D+ E+I D ++ +++ + ++++K+
Sbjct: 429 IEKRMDVLTKQLEASVGELVDEVKKEMDELKDLLPDIKEKIEDSKEAQKNATVTEKALKE 488
Query: 321 FMMTAVSSSSQQ 356
++ S S++
Sbjct: 489 TLVGGSSGFSKE 500
>sp|P22312|PU92_SCICO Puff II/9-2 protein precursor
Length = 286
Score = 38.1 bits (87), Expect = 0.012
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Frame = +3
Query: 21 EAIDQYKKALMLRQKHLDKLSRRIAESYYNLGVAFTVDMRPSEAVEAYEQCREILMKCQS 200
EA + +KAL QK+ + L I + L +EA +A E+C++ L C+
Sbjct: 94 EARQKAEKALKECQKNTENLKETIEQLKKEL----------AEAQKALEKCKKELADCKK 143
Query: 201 FEGG--SKAQELAEIITDLDERINDCRDGERDYALAKESIKQ 320
+K +EL IT L E++ CR ERD + K+
Sbjct: 144 ENAKLLNKIEELNCTITQLQEKLERCRGRERDLQCQLDECKK 185
>sp|Q92JK8|CLPB_RICCN Chaperone clpB
Length = 857
Score = 36.2 bits (82), Expect = 0.044
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Frame = +3
Query: 9 DVIPEAIDQYKKALMLRQKHLDKLSRRIAESYYNLGVAFTV-DMRPSEAVEAYEQCREIL 185
D+I EA + K L + + LD+L RRI + L D + +E E L
Sbjct: 393 DLIDEACSRMKIELSSKPEELDELDRRIIQIKIELAALKKENDEHSKKKIEHLTTALEKL 452
Query: 186 MKCQSFEGG-------SKAQELAEIITDLDERINDCRDGERDYALAKES 311
+ QS++ G SK Q+ ++ +LD N+ ERD LAK S
Sbjct: 453 -ESQSYDMGAKWQAEKSKLQQTQKLKEELDRSRNELERAERDANLAKAS 500
>sp|O58687|RAD50_PYRHO DNA double-strand break repair rad50 ATPase
Length = 879
Score = 32.0 bits (71), Expect = 0.83
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 7/146 (4%)
Frame = +3
Query: 42 KALMLRQKHLDKLSRRIAE--SYYNLGVAFTVDMRPSEAVEAYEQCREIL--MKCQSFEG 209
+ L L K +D+LS RI E ++N + EA A ++ R+IL +K + E
Sbjct: 578 RLLRLGFKTIDELSGRIRELEKFHNKYI---------EAKNAEKELRDILESLKDEREEL 628
Query: 210 GSKAQELAEIITDLDERINDCRDGERDYALAKESIKQFMMTAVSSSSQQPANDLTHLLRR 389
+ELA+I TD+++ + + +R + K K+ M +S + L L RR
Sbjct: 629 DKAFEELAKIETDIEKVTSQLNELQRKFDQKKYEEKREKMMKLSMEIKGLETKLEELERR 688
Query: 390 ---TQNAPRSDRPDNDEPPSSKRKLE 458
++ + + E S+K +LE
Sbjct: 689 RDEIKSTIEKLKEERKERESAKMELE 714
>sp|Q8RVB2|SPY_LYCES Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY (LeSPY)
Length = 931
Score = 32.0 bits (71), Expect = 0.83
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +3
Query: 93 AESYYNLGVAFTVDMRPSEAVEAYEQCREI 182
AE+Y NLGV + S A+EAYEQC +I
Sbjct: 402 AEAYNNLGVLYRDAGNISLAIEAYEQCLKI 431
Score = 29.3 bits (64), Expect = 5.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 21 EAIDQYKKALMLRQKHLDKLSRRIAESYYNLGVAFTVDMRPSEAVEAYEQ 170
E I +Y +A+ K+ A +YYNLGV ++ M+ A+ YE+
Sbjct: 175 EGIQKYYEAI--------KIDSHYAPAYYNLGVVYSEMMQYDMALNCYEK 216
>sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY (PhSPY)
Length = 932
Score = 32.0 bits (71), Expect = 0.83
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +3
Query: 93 AESYYNLGVAFTVDMRPSEAVEAYEQCREI 182
AE+Y NLGV + S A+EAYEQC +I
Sbjct: 402 AEAYNNLGVLYRDAGNISLAIEAYEQCLKI 431
Score = 29.3 bits (64), Expect = 5.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 21 EAIDQYKKALMLRQKHLDKLSRRIAESYYNLGVAFTVDMRPSEAVEAYEQ 170
E I +Y +A+ K+ A +YYNLGV ++ M+ A+ YE+
Sbjct: 175 EGIQKYYEAI--------KIDSHYAPAYYNLGVVYSEMMQYDMALNCYEK 216
>sp|P21538|REB1_YEAST DNA-binding protein REB1 (QBP)
Length = 810
Score = 31.2 bits (69), Expect = 1.4
Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 20/113 (17%)
Frame = +3
Query: 165 EQCREILMKCQSFEGGSKAQELAEIITDLDERINDCRDGERDYA---------------- 296
E+ +E+ C EG + AEI L DCRD R+Y
Sbjct: 481 EEEQELAKLCAEKEG-----QWAEIGKTLGRMPEDCRDRWRNYVKCGTNRASNRWSVEEE 535
Query: 297 -LAKESIKQFMMTAVSSSSQQPANDLT---HLLRRTQNAPRSDRPDNDEPPSS 443
L K+ I + A SQ N L HLL+ QN R++ D+D+ S+
Sbjct: 536 ELLKKVISDMLEEAQQQQSQLHPNLLEEEQHLLQDDQNDHRNNDEDDDDTASA 588
>sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY
Length = 914
Score = 30.4 bits (67), Expect = 2.4
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 21 EAIDQYKKALMLRQKHLDKLSRRIAESYYNLGVAFTVDMRPSEAVEAYEQ 170
E I +Y +AL K+ A +YYNLGV ++ M+ A+ YE+
Sbjct: 170 EGIQKYYEAL--------KIDPHYAPAYYNLGVVYSEMMQYDNALSCYEK 211
>sp|Q9ZEA9|CLPB_RICPR Chaperone clpB
Length = 858
Score = 30.4 bits (67), Expect = 2.4
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Frame = +3
Query: 9 DVIPEAIDQYKKALMLRQKHLDKLSRRIAESYYNLGVAFTVDMRPSEA--VEAYEQCREI 182
D+I EA + K L + + LD+L RRI + L + S+ E+ +++
Sbjct: 393 DLIDEACSRMKIELSSKPEELDELDRRIIQIKIELAALKKENDEHSKKKITSLTEELKKL 452
Query: 183 LMKCQSFEGG-----SKAQELAEIITDLDERINDCRDGERDYALAKES-IKQFMMTAVSS 344
K SK Q+ ++ +L++ D ERD LAK S +K ++ + +
Sbjct: 453 ESKSYDMNTKWQAEKSKLQQAQKLKEELEQARIDLERAERDANLAKASELKYGIIPEIMN 512
Query: 345 SSQQPAN 365
Q+ N
Sbjct: 513 KLQEAEN 519
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,080,345
Number of Sequences: 369166
Number of extensions: 823949
Number of successful extensions: 2547
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2542
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3119256630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)