Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_A23
(300 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35861|CH602_BRAJA 60 kDa chaperonin 2 (Protein Cpn60 2)... 35 0.069
sp|P60365|CH602_RHOPA 60 kDa chaperonin 2 (Protein Cpn60 2)... 34 0.12
sp|Q89IK8|CH606_BRAJA 60 kDa chaperonin 6 (Protein Cpn60 6)... 32 0.44
sp|Q5FPQ6|CH60_GLUOX 60 kDa chaperonin (Protein Cpn60) (gro... 31 0.76
sp|P28191|PTP1_CAEEL Tyrosine-protein phosphatase 1 (Protei... 30 1.7
sp|P00968|CARB_ECOLI Carbamoyl-phosphate synthase large cha... 29 2.9
sp|P63738|CARB_SHIFL Carbamoyl-phosphate synthase large cha... 29 2.9
sp|Q8Z9L7|CARB_SALTI Carbamoyl-phosphate synthase large cha... 29 2.9
sp|P14846|CARB_SALTY Carbamoyl-phosphate synthase large cha... 29 2.9
sp|Q8FLB0|CARB_ECOL6 Carbamoyl-phosphate synthase large cha... 29 2.9
>sp|P35861|CH602_BRAJA 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2)
Length = 550
Score = 34.7 bits (78), Expect = 0.069
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +3
Query: 90 IRAMHEGSRIVGSLIKDDQYAYVIYSEGIFRKYEYQVLVESEIVDTTKLV 239
I A +GS IVG +++ DQY+Y S+ EY LV I+D TK+V
Sbjct: 456 INAGEDGSVIVGKILEKDQYSYGYDSQ----TGEYGNLVSKGIIDPTKVV 501
>sp|P60365|CH602_RHOPA 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2)
Length = 547
Score = 33.9 bits (76), Expect = 0.12
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 15 QTKWERHENG-NIPCNAVYAGINCYVIRAMHEGSRIVGSLIKDDQYAYVIYSEGIFRKYE 191
+TK + + G I A+ A I A +GS IVG +++ +QYA+ S+ E
Sbjct: 430 KTKNDDQKTGVEIVRRALSAPARQIAINAGEDGSVIVGKVLEKEQYAFGFDSQ----SGE 485
Query: 192 YQVLVESEIVDTTKLV 239
Y LV+ I+D TK+V
Sbjct: 486 YGDLVKKGIIDPTKVV 501
>sp|Q89IK8|CH606_BRAJA 60 kDa chaperonin 6 (Protein Cpn60 6) (groEL protein 6)
Length = 546
Score = 32.0 bits (71), Expect = 0.44
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +3
Query: 15 QTKWERHENG-NIPCNAVYAGINCYVIRAMHEGSRIVGSLIKDDQYAYVIYSEGIFRKYE 191
+TK + + G I A+ A I A +GS IVG ++++ YAY S+ E
Sbjct: 430 RTKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILENKTYAYGFDSQ----TGE 485
Query: 192 YQVLVESEIVDTTKLV 239
Y LV I+D TK+V
Sbjct: 486 YVNLVTKGIIDPTKVV 501
>sp|Q5FPQ6|CH60_GLUOX 60 kDa chaperonin (Protein Cpn60) (groEL protein)
Length = 543
Score = 31.2 bits (69), Expect = 0.76
Identities = 19/71 (26%), Positives = 37/71 (52%)
Frame = +3
Query: 27 ERHENGNIPCNAVYAGINCYVIRAMHEGSRIVGSLIKDDQYAYVIYSEGIFRKYEYQVLV 206
++ G I A+ A + A +G+ I G +++++ Y + ++ K EY+ LV
Sbjct: 435 DQRVGGEIVRKALQAPLRQIAFNAGEDGAVIAGKVLENEGYVFGFDAQ----KGEYKDLV 490
Query: 207 ESEIVDTTKLV 239
+ I+D TK+V
Sbjct: 491 AAGIIDPTKVV 501
>sp|P28191|PTP1_CAEEL Tyrosine-protein phosphatase 1 (Protein-tyrosine phosphatase 1)
Length = 1026
Score = 30.0 bits (66), Expect = 1.7
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 72 GINCYVIRAMHEGSRIVGSLIKDDQYAYVIYSEGIFRKYEYQVLVESE 215
G+ I+ HEG IK ++YA+V + F+K ++QVLV +E
Sbjct: 239 GVGAVGIKVFHEG-------IKMNEYAWVRIRKLSFKKKQFQVLVANE 279
>sp|P00968|CARB_ECOLI Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
synthetase ammonia chain)
Length = 1073
Score = 29.3 bits (64), Expect = 2.9
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 69 AGINCYVIRAMHEGSRIVGSLIKDDQYAYVIYSEGIFRKYEYQVLVESEIVDTTKLVWK 245
AGIN ++ +HEG + IK+ +Y Y+I + R E +S ++ + L +K
Sbjct: 984 AGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIE-----DSRVIRRSALQYK 1037
>sp|P63738|CARB_SHIFL Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
synthetase ammonia chain)
sp|P63737|CARB_ECO57 Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
synthetase ammonia chain)
Length = 1073
Score = 29.3 bits (64), Expect = 2.9
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 69 AGINCYVIRAMHEGSRIVGSLIKDDQYAYVIYSEGIFRKYEYQVLVESEIVDTTKLVWK 245
AGIN ++ +HEG + IK+ +Y Y+I + R E +S ++ + L +K
Sbjct: 984 AGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIE-----DSRVIRRSALQYK 1037
>sp|Q8Z9L7|CARB_SALTI Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
synthetase ammonia chain)
Length = 1075
Score = 29.3 bits (64), Expect = 2.9
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 69 AGINCYVIRAMHEGSRIVGSLIKDDQYAYVIYSEGIFRKYEYQVLVESEIVDTTKLVWK 245
AGIN ++ +HEG + IK+ +Y Y+I + R E +S ++ + L +K
Sbjct: 984 AGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTAGRRAIE-----DSRVIRRSALQYK 1037
>sp|P14846|CARB_SALTY Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
synthetase ammonia chain)
Length = 1075
Score = 29.3 bits (64), Expect = 2.9
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 69 AGINCYVIRAMHEGSRIVGSLIKDDQYAYVIYSEGIFRKYEYQVLVESEIVDTTKLVWK 245
AGIN ++ +HEG + IK+ +Y Y+I + R E +S ++ + L +K
Sbjct: 984 AGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTAGRRAIE-----DSRVIRRSALQYK 1037
>sp|Q8FLB0|CARB_ECOL6 Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
synthetase ammonia chain)
Length = 1073
Score = 29.3 bits (64), Expect = 2.9
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 69 AGINCYVIRAMHEGSRIVGSLIKDDQYAYVIYSEGIFRKYEYQVLVESEIVDTTKLVWK 245
AGIN ++ +HEG + IK+ +Y Y+I + R E +S ++ + L +K
Sbjct: 984 AGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIE-----DSRVIRRSALQYK 1037
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,641,594
Number of Sequences: 369166
Number of extensions: 650033
Number of successful extensions: 1715
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1715
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1668247950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)