Planarian EST Database

Dr_sW_012_A18

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_012_A18
         (271 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NZH8|IL1F9_HUMAN  Interleukin-1 family member 9 (IL-1F9...    28   6.6  

>sp|Q9NZH8|IL1F9_HUMAN Interleukin-1 family member 9 (IL-1F9) (Interleukin-1 homolog 1)
           (IL-1H1) (Interleukin-1 epsilon) (IL-1 epsilon)
           (IL-1-related protein 2) (IL-1RP2)
          Length = 169

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 156 TTTMSRIAF-NWLIFTSKQSNHIIKTFNYNSAHQLPFNKQINE 31
           T+T+  +AF +W I +SK+   II T     ++   F   IN+
Sbjct: 127 TSTLESVAFPDWFIASSKRDQPIILTSELGKSYNTAFELNIND 169

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,368,102
Number of Sequences: 369166
Number of extensions: 357909
Number of successful extensions: 805
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 68,354,980
effective HSP length: 59
effective length of database: 57,455,615
effective search space used: 1723668450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)