Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_A16
(378 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 229 1e-60
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 229 2e-60
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 229 2e-60
sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alp... 229 2e-60
sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic fo... 228 3e-60
sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha) 226 1e-59
sp|Q26487|EF1A_SPOFR Elongation factor 1-alpha (EF-1-alpha) 226 1e-59
sp|P84316|EF1A_HELZE Elongation factor 1-alpha (EF-1-alpha)... 226 1e-59
sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha)... 226 2e-59
sp|P02993|EF1A_ARTSA Elongation factor 1-alpha (EF-1-alpha) 224 6e-59
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 229 bits (584), Expect = 1e-60
Identities = 105/125 (84%), Positives = 118/125 (94%)
Frame = +2
Query: 2 RDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKM 181
RDFIKNMITGTSQADCAVL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKM
Sbjct: 96 RDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKM 155
Query: 182 DSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWE 361
DSTEPP+S KR+EEI KEV +Y+KK+GY PD VAFVPISGWNGDNM+E S+NMPW+KGW+
Sbjct: 156 DSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSSNMPWFKGWK 215
Query: 362 ITRKN 376
+TRK+
Sbjct: 216 VTRKD 220
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 229 bits (583), Expect = 2e-60
Identities = 105/125 (84%), Positives = 117/125 (93%)
Frame = +2
Query: 2 RDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKM 181
RDFIKNMITGTSQADCAVL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKM
Sbjct: 96 RDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKM 155
Query: 182 DSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWE 361
DSTEPP+S KR+EEI KEV +Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW+
Sbjct: 156 DSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWK 215
Query: 362 ITRKN 376
+TRK+
Sbjct: 216 VTRKD 220
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 229 bits (583), Expect = 2e-60
Identities = 105/125 (84%), Positives = 117/125 (93%)
Frame = +2
Query: 2 RDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKM 181
RDFIKNMITGTSQADCAVL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKM
Sbjct: 96 RDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKM 155
Query: 182 DSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWE 361
DSTEPP+S KR+EEI KEV +Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW+
Sbjct: 156 DSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWK 215
Query: 362 ITRKN 376
+TRK+
Sbjct: 216 VTRKD 220
>sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 229 bits (583), Expect = 2e-60
Identities = 105/125 (84%), Positives = 117/125 (93%)
Frame = +2
Query: 2 RDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKM 181
RDFIKNMITGTSQADCAVL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKM
Sbjct: 96 RDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKM 155
Query: 182 DSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWE 361
DSTEPP+S KR+EEI KEV +Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW+
Sbjct: 156 DSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWK 215
Query: 362 ITRKN 376
+TRK+
Sbjct: 216 VTRKD 220
>sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic form (EF-1-alpha-S)
Length = 462
Score = 228 bits (581), Expect = 3e-60
Identities = 105/124 (84%), Positives = 116/124 (93%)
Frame = +2
Query: 2 RDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKM 181
RDFIKNMITGTSQADCAVL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVG+NKM
Sbjct: 96 RDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGINKM 155
Query: 182 DSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWE 361
DSTEPP+S KR+EEI KEV +Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW+
Sbjct: 156 DSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSPNMPWFKGWK 215
Query: 362 ITRK 373
ITRK
Sbjct: 216 ITRK 219
>sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 226 bits (577), Expect = 1e-59
Identities = 105/124 (84%), Positives = 117/124 (94%)
Frame = +2
Query: 2 RDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKM 181
RDFIKNMITGTSQADCAVL+VAAGTGEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKM
Sbjct: 96 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 155
Query: 182 DSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWE 361
DSTEPP+S+ RFEEIKKEV SY+KK+GY P AVAFVPISGW+GDNM+E ST MPW+KGW+
Sbjct: 156 DSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQ 215
Query: 362 ITRK 373
+ RK
Sbjct: 216 VERK 219
>sp|Q26487|EF1A_SPOFR Elongation factor 1-alpha (EF-1-alpha)
Length = 413
Score = 226 bits (576), Expect = 1e-59
Identities = 105/124 (84%), Positives = 116/124 (93%)
Frame = +2
Query: 2 RDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKM 181
RDFIKNMITGTSQADCAVL+VAAGTGEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKM
Sbjct: 82 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 141
Query: 182 DSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWE 361
DSTEPP+S+ RFEEIKKEV SY+KK+GY P AVAFVPISGW+GDNM+E ST MPW+KGW
Sbjct: 142 DSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWN 201
Query: 362 ITRK 373
+ RK
Sbjct: 202 VERK 205
>sp|P84316|EF1A_HELZE Elongation factor 1-alpha (EF-1-alpha)
sp|P84315|EF1A_HELVI Elongation factor 1-alpha (EF-1-alpha)
sp|P84318|EF1A_HELGL Elongation factor 1-alpha (EF-1-alpha)
sp|P84320|EF1A_HELDI Elongation factor 1-alpha (EF-1-alpha)
sp|P84317|EF1A_HELAM Elongation factor 1-alpha (EF-1-alpha)
sp|P84319|EF1A_HELAL Elongation factor 1-alpha (EF-1-alpha)
sp|P84322|EF1A_ANIIF Elongation factor 1-alpha (EF-1-alpha)
sp|P84321|EF1A_ADIBE Elongation factor 1-alpha (EF-1-alpha)
Length = 413
Score = 226 bits (576), Expect = 1e-59
Identities = 105/124 (84%), Positives = 116/124 (93%)
Frame = +2
Query: 2 RDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKM 181
RDFIKNMITGTSQADCAVL+VAAGTGEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKM
Sbjct: 82 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 141
Query: 182 DSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWE 361
DSTEPP+S+ RFEEIKKEV SY+KK+GY P AVAFVPISGW+GDNM+E ST MPW+KGW
Sbjct: 142 DSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWN 201
Query: 362 ITRK 373
+ RK
Sbjct: 202 VERK 205
>sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha) (50 kDa female-specific
protein)
Length = 463
Score = 226 bits (575), Expect = 2e-59
Identities = 104/124 (83%), Positives = 118/124 (95%)
Frame = +2
Query: 2 RDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKM 181
RDFIKNMITGTSQADCAVL+VAAGTGEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKM
Sbjct: 96 RDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKM 155
Query: 182 DSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWE 361
DS+EPP+S+ R+EEIKKEV SY+KK+GY P AVAFVPISGW+GDNM+E STNMPW+KGW+
Sbjct: 156 DSSEPPYSEARYEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTNMPWFKGWK 215
Query: 362 ITRK 373
+ RK
Sbjct: 216 VERK 219
>sp|P02993|EF1A_ARTSA Elongation factor 1-alpha (EF-1-alpha)
Length = 462
Score = 224 bits (570), Expect = 6e-59
Identities = 105/124 (84%), Positives = 114/124 (91%)
Frame = +2
Query: 2 RDFIKNMITGTSQADCAVLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKM 181
RDFIKNMITGTSQADCAVL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKM
Sbjct: 96 RDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKM 155
Query: 182 DSTEPPFSDKRFEEIKKEVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWE 361
DSTEPPFS+ RFEEIKKEV +Y+KK+GY P AVAFVPISGW+GDNM+E S +PWYKGW
Sbjct: 156 DSTEPPFSEARFEEIKKEVSAYIKKIGYNPAAVAFVPISGWHGDNMLEASDRLPWYKGWN 215
Query: 362 ITRK 373
I RK
Sbjct: 216 IERK 219
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,458,273
Number of Sequences: 369166
Number of extensions: 768211
Number of successful extensions: 3212
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2904
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)