Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_A06
(856 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P40962|RTS2_YEAST Zinc finger protein RTS2 58 4e-08
sp|P36044|MNN4_YEAST Protein MNN4 48 3e-05
sp|Q9U7E0|ATRX_CAEEL Transcriptional regulator ATRX homolog... 47 5e-05
sp|P13816|GARP_PLAFF Glutamic acid-rich protein precursor 43 0.001
sp|Q15075|EEA1_HUMAN Early endosome antigen 1 (Endosome-ass... 43 0.001
sp|Q58718|RAD50_METJA DNA double-strand break repair rad50 ... 43 0.001
sp|Q8STA9|Y5G8_ENCCU Hypothetical protein ECU05_1680/ECU11_... 42 0.002
sp|Q9JJ11|TACC3_MOUSE Transforming acidic coiled-coil conta... 41 0.005
sp|O67825|IF2_AQUAE Translation initiation factor IF-2 41 0.005
sp|P16947|M49_STRP9 M protein, serotype 49 precursor 40 0.008
>sp|P40962|RTS2_YEAST Zinc finger protein RTS2
Length = 232
Score = 57.8 bits (138), Expect = 4e-08
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +2
Query: 32 YTRVFMKGYLDVLRRQFGGKRTQANVVYQEYIKDKEHVHMNSTKFSTLNGFVRCLDKMKI 211
Y F KG+L +L+++ G K AN VY EY++D++HVHMN+T +L FVR L +
Sbjct: 63 YNIQFEKGFLQLLKQRHGEKWIDANKVYNEYVQDRDHVHMNATMHRSLTQFVRYLGRAGK 122
Query: 212 CRVD 223
VD
Sbjct: 123 VDVD 126
>sp|P36044|MNN4_YEAST Protein MNN4
Length = 1178
Score = 48.1 bits (113), Expect = 3e-05
Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 12/192 (6%)
Frame = +2
Query: 95 TQANVVYQEYIKDKEHVHMNSTKFSTLNGFVRCLDKMKICRVDETEKGLFIEYIVKDP-- 268
T AN V + K +++ +S F LN + LD D KG I+ KDP
Sbjct: 968 TPANTVEVNPVDFKSNLNFSSNSFLDLNSYG--LDLFAPTLSDVNRKG--IQMFDKDPII 1023
Query: 269 -----EQEHLQKKRRRTEQGFLDDDEKHFITLMEKMLS----KKQKIDSEEVEIDQPTDL 421
L ++R+R E+ +++EK EK KK+K + E+ + ++
Sbjct: 1024 VYEDYAYAKLLEERKRREKKKKEEEEKKKKEEEEKKKKEEEEKKKKEEEEKKKKEEEEKK 1083
Query: 422 IKKDEEKIAFNFVKTEQKIESIMKIEDE-KKLKRNEETNKSRFETEKIVEFNENSLRKFH 598
K++EEK + ++K E K ++E +K+K +E NK + EK + NE +K
Sbjct: 1084 KKEEEEKKKQEEEEKKKKEEEEKKKQEEGEKMKNEDEENKKNEDEEK--KKNEEEEKKKQ 1141
Query: 599 ESDNEKKIVDDK 634
E N+K ++K
Sbjct: 1142 EEKNKKNEDEEK 1153
Score = 44.7 bits (104), Expect = 3e-04
Identities = 36/129 (27%), Positives = 62/129 (48%)
Frame = +2
Query: 260 KDPEQEHLQKKRRRTEQGFLDDDEKHFITLMEKMLSKKQKIDSEEVEIDQPTDLIKKDEE 439
K ++E +KK+ E+ +++EK +K +K+K + EE + + + KK+EE
Sbjct: 1050 KKKKEEEEKKKKEEEEKKKKEEEEK-----KKKEEEEKKKKEEEEKKKQEEEEKKKKEEE 1104
Query: 440 KIAFNFVKTEQKIESIMKIEDEKKLKRNEETNKSRFETEKIVEFNENSLRKFHESDNEKK 619
+ K +Q+ MK EDE+ K +E K E EK + +N D EKK
Sbjct: 1105 E------KKKQEEGEKMKNEDEENKKNEDEEKKKNEEEEKKKQEEKNK----KNEDEEKK 1154
Query: 620 IVDDKNIKK 646
+++ KK
Sbjct: 1155 KQEEEEKKK 1163
Score = 39.7 bits (91), Expect = 0.011
Identities = 27/100 (27%), Positives = 52/100 (52%)
Frame = +2
Query: 260 KDPEQEHLQKKRRRTEQGFLDDDEKHFITLMEKMLSKKQKIDSEEVEIDQPTDLIKKDEE 439
K ++E +KK+ E+ +++EK ++ KK++ + E+++ + + +DEE
Sbjct: 1074 KKKKEEEEKKKKEEEEKKKQEEEEKK----KKEEEEKKKQEEGEKMKNEDEENKKNEDEE 1129
Query: 440 KIAFNFVKTEQKIESIMKIEDEKKLKRNEETNKSRFETEK 559
K + +++ E K EDE+K K+ EE K E EK
Sbjct: 1130 KKKNEEEEKKKQEEKNKKNEDEEKKKQEEEEKKKNEEEEK 1169
Score = 33.1 bits (74), Expect = 1.0
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Frame = +2
Query: 221 DETEKGLFIEYIVKDPEQEHLQKKRRRTEQGFLDDDEKHFITLMEKMLSKKQKIDSEEVE 400
+E EK E K E+E +KK ++ ++++K +K + +K+ +E+ E
Sbjct: 1062 EEEEKKKKEEEEKKKKEEEEKKKKEEEEKKKQEEEEKKKKEEEEKKKQEEGEKMKNEDEE 1121
Query: 401 IDQPTDLIKK---DEEKIAFNFVKTEQKIESIMKIEDEKKLKRNEETNKSRFE 550
+ D KK +EEK + + E K E+E+K K EE K + E
Sbjct: 1122 NKKNEDEEKKKNEEEEKKKQEEKNKKNEDEEKKKQEEEEKKKNEEEEKKKQEE 1174
>sp|Q9U7E0|ATRX_CAEEL Transcriptional regulator ATRX homolog (X-linked nuclear protein 1)
Length = 1359
Score = 47.4 bits (111), Expect = 5e-05
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 3/152 (1%)
Frame = +2
Query: 260 KDPEQEHLQKKRRRTEQGFLDDDEKHFITLMEKMLSKKQKIDSEEVEIDQPTDLIK-KDE 436
K P ++ KKR+ + DDDE+ K K+ K +SE E D+ D K K +
Sbjct: 48 KPPPKKRPAKKRKASSSEEDDDDEEESPRKSSKKSRKRAKSESESDESDEEEDRKKSKSK 107
Query: 437 EKIAFNFVKTEQKIESIMKIEDEKKLKRNEETNKSRFETEKIVEFNENSLRKFHESDNEK 616
+K+ + +K + EDE + E+ +K + + K +E+S ES+ E+
Sbjct: 108 KKVDQKKKEKSKKKRTTSSSEDEDSDEEREQKSKKKSKKTKKQTSSESS----EESEEER 163
Query: 617 KIVDDKNIKKLKLDSFVRAS--SSTNEKTLKK 706
K+ K K+ + S S +EK KK
Sbjct: 164 KVKKSKKNKEKSVKKRAETSEESDEDEKPSKK 195
Score = 44.3 bits (103), Expect = 4e-04
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 2/155 (1%)
Frame = +2
Query: 257 VKDPEQEHLQKKRRRTEQGFLDDDEKHFITLMEKMLSKKQKIDSEEVEIDQPTDLIKKDE 436
V ++E +KKR + D DE+ +K K++ SE E + +KK +
Sbjct: 110 VDQKKKEKSKKKRTTSSSEDEDSDEEREQKSKKKSKKTKKQTSSESSEESEEERKVKKSK 169
Query: 437 EKIAFNFVKTEQKIESIMKIEDEKKLKRNEETNKSRFETEKIVEFNENSLRKFHESDNEK 616
+ EK +K+ ET++ E EK + ++ L+K +S++E
Sbjct: 170 KN-------------------KEKSVKKRAETSEESDEDEKPSKKSKKGLKKKAKSESES 210
Query: 617 KIVDDKNIKKLKLDS--FVRASSSTNEKTLKKLST 715
+ D+K +KK K S V+ S + ++ +K T
Sbjct: 211 ESEDEKEVKKSKKKSKKVVKKESESEDEAPEKKKT 245
Score = 34.7 bits (78), Expect = 0.35
Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 11/162 (6%)
Frame = +2
Query: 260 KDPEQEHLQKKRRRTEQGFLDDDEKHFITLMEKMLSKKQKIDSE-EVEIDQPTDLIKKDE 436
K +++ ++K+ +E+ D+DEK +K L KK K +SE E E ++ KK
Sbjct: 169 KKNKEKSVKKRAETSEES--DEDEKPS-KKSKKGLKKKAKSESESESEDEKEVKKSKKKS 225
Query: 437 EKIAFNFVKTEQKIESIMKIEDEKKLKRNEETNKSRFETEKIVEFNENSLR--------- 589
+K+ ++E + K E K+ K + E + ++++ E E+S +
Sbjct: 226 KKVVKKESESEDEAPEKKKTEKRKRSKTSSEESSESEKSDEEEEEKESSPKPKKKKPLAV 285
Query: 590 KFHESDNEKKIVDDKNI-KKLKLDSFVRASSSTNEKTLKKLS 712
K SD E + D + + +K K + S S +EK K S
Sbjct: 286 KKLSSDEESEESDVEVLPQKKKRGAVTLISDSEDEKDQKSES 327
>sp|P13816|GARP_PLAFF Glutamic acid-rich protein precursor
Length = 678
Score = 43.1 bits (100), Expect = 0.001
Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Frame = +2
Query: 371 KQKIDSEEVEIDQPTDLIK---KDEEKIAFNFVKTEQKIESIMKIEDEKKLKRNEETNKS 541
K+ I ++ E Q +++K K E K +K ++KIE K ++EK+ K+ E+ K
Sbjct: 240 KENISEDKKEDHQQEEMLKTLDKKERKQKEKEMKEQEKIEKKKKKQEEKEKKKQEKERKK 299
Query: 542 RFETEKIVEFNENSLRKFHESDNEKKIVDDKNIKKLKLDSFVRASSSTNEKTLKK 706
+ + E+ + E ++K + + E+K ++K KK K D NE+T+++
Sbjct: 300 QEKKER--KQKEKEMKKQKKIEKERKKKEEKEKKKKKHD-------KENEETMQQ 345
Score = 36.2 bits (82), Expect = 0.12
Identities = 24/111 (21%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Frame = +2
Query: 320 DDDEKHFITLMEKMLSKKQKIDSEE------VEIDQPTDLIKKDEEKIAFNFVKTEQKIE 481
D+ +K + E L K++ +D EE E+ + + +++DEE++ + + E++ E
Sbjct: 525 DNHKKKMAKIEEAELQKQKHVDKEEDKKEESKEVQEESKEVQEDEEEVEEDEEEEEEEEE 584
Query: 482 SIMKIEDEKKLKRNEETNKSRFETEKIVEFNENSLRKFHESDNEKKIVDDK 634
+ E+E++ + EE + E E+ + E E +++ + DD+
Sbjct: 585 EEEEEEEEEEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEEDDDE 635
Score = 33.9 bits (76), Expect = 0.59
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 14/118 (11%)
Frame = +2
Query: 248 EYIVKDPEQEH--------LQKKRRRTEQGFLDDDEKHFITLMEKMLSKKQKIDSEEVEI 403
E I +D +++H L KK R+ ++ + + EK +EK K+++ + ++ E
Sbjct: 241 ENISEDKKEDHQQEEMLKTLDKKERKQKEKEMKEQEK-----IEKKKKKQEEKEKKKQEK 295
Query: 404 DQPTDLIKKDEEKIAFNFVKTEQKIESIMKIEDEKKLKR------NEETNKSRFETEK 559
++ +K E K +K ++KIE K ++EK+ K+ NEET + +T +
Sbjct: 296 ERKKQ--EKKERKQKEKEMKKQKKIEKERKKKEEKEKKKKKHDKENEETMQQPDQTSE 351
Score = 33.5 bits (75), Expect = 0.77
Identities = 23/117 (19%), Positives = 57/117 (48%)
Frame = +2
Query: 266 PEQEHLQKKRRRTEQGFLDDDEKHFITLMEKMLSKKQKIDSEEVEIDQPTDLIKKDEEKI 445
P +++ +KK + E+ L +KH + E + +++ E E+ + + +++DEE+
Sbjct: 522 PRRDNHKKKMAKIEEAELQK-QKH-VDKEEDKKEESKEVQEESKEVQEDEEEVEEDEEEE 579
Query: 446 AFNFVKTEQKIESIMKIEDEKKLKRNEETNKSRFETEKIVEFNENSLRKFHESDNEK 616
+ E++ E + E+E++ + +E + + E+ + E E D+E+
Sbjct: 580 EEEEEEEEEEEEEEEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEEDDDEE 636
Score = 30.8 bits (68), Expect = 5.0
Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 7/153 (4%)
Frame = +2
Query: 200 KMKICRVDETEKGLFIEYIVKDPEQEHLQKKRRRTEQGFLDDDEKHFITLMEKMLSKKQK 379
K K+ +++E E +Q+H+ K+ + E+ +E SK+ +
Sbjct: 528 KKKMAKIEEAEL----------QKQKHVDKEEDKKEESKEVQEE-----------SKEVQ 566
Query: 380 IDSEEVEIDQPTDLIKKDEEKIAFNFVKTEQKIESIMKIEDEKKLKRNEETNKSRFETEK 559
D EEVE D+ + +++EE+ + E++ E + E+E++ +EE E E
Sbjct: 567 EDEEEVEEDEEEEEEEEEEEE------EEEEEEEEEEEEEEEEEEDEDEEDEDDAEEDED 620
Query: 560 IVEFNENSLRKF-------HESDNEKKIVDDKN 637
E +E+ + E D+E + D+++
Sbjct: 621 DAEEDEDDAEEDDDEEDDDEEDDDEDEDEDEED 653
Score = 30.0 bits (66), Expect = 8.5
Identities = 27/106 (25%), Positives = 49/106 (46%)
Frame = +2
Query: 218 VDETEKGLFIEYIVKDPEQEHLQKKRRRTEQGFLDDDEKHFITLMEKMLSKKQKIDSEEV 397
V+E E+ E ++ E+E +++ E+ D+DE+ E ++ D E
Sbjct: 572 VEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEE 631
Query: 398 EIDQPTDLIKKDEEKIAFNFVKTEQKIESIMKIEDEKKLKRNEETN 535
+ D+ D + D+E + E++ E + E EKK+KRN N
Sbjct: 632 DDDEEDDDEEDDDEDEDEDEEDEEEEEEE--EEESEKKIKRNLRKN 675
>sp|Q15075|EEA1_HUMAN Early endosome antigen 1 (Endosome-associated protein p162) (Zinc
finger FYVE domain-containing protein 2)
Length = 1411
Score = 42.7 bits (99), Expect = 0.001
Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 5/160 (3%)
Frame = +2
Query: 116 QEYIKDKEHVHMNSTKFSTLNGFVRCLDKMKICRVDETEKGLFIEYI-----VKDPEQEH 280
++ +K+KE V+ S K + + ++C + +I +++E K +E I +KD +Q
Sbjct: 1111 EKSLKEKELVNEKS-KLAEIEE-IKCRQEKEITKLNEELKSHKLESIKEITNLKDAKQLL 1168
Query: 281 LQKKRRRTEQGFLDDDEKHFITLMEKMLSKKQKIDSEEVEIDQPTDLIKKDEEKIAFNFV 460
+Q+K + L K S K ++ E+ D +KK+EE++ F+
Sbjct: 1169 IQQK----------------LELQGKADSLKAAVEQEKRNQQILKDQVKKEEEELKKEFI 1212
Query: 461 KTEQKIESIMKIEDEKKLKRNEETNKSRFETEKIVEFNEN 580
+ E K+ S +K E E +K++EE N+++ T +I NEN
Sbjct: 1213 EKEAKLHSEIK-EKEVGMKKHEE-NEAKL-TMQITALNEN 1249
>sp|Q58718|RAD50_METJA DNA double-strand break repair rad50 ATPase
Length = 1005
Score = 42.7 bits (99), Expect = 0.001
Identities = 57/225 (25%), Positives = 96/225 (42%), Gaps = 7/225 (3%)
Frame = +2
Query: 122 YIKDKEHVHMNSTKFSTLNGFVRCLDKMKICRVDETEKGLF-IEYIVKDPEQEHLQKKRR 298
YIK E KF +L + K+ +DE EK + IVK+ E+ + +R
Sbjct: 131 YIKQGE-----IAKFLSLKPSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEK---RLERI 182
Query: 299 RTEQGFLDDDEKHFITLMEKMLSKKQKIDSEEVEIDQPTDLIKKDEEKIAFNFVKTEQKI 478
E + ++ EK M ++ K +K+ +EI+ + IKK+ E I F + E K
Sbjct: 183 EGELNYKENYEKELKNKMSQLEEKNKKL----MEINDKLNKIKKEFEDIEKLFNEWENKK 238
Query: 479 ----ESIMKIEDEKKLK--RNEETNKSRFETEKIVEFNENSLRKFHESDNEKKIVDDKNI 640
+ I K+E+ K+ +N+E ++ +VE E R E + K +VD+
Sbjct: 239 LLYEKFINKLEERKRALELKNQELKILEYDLNTVVEARETLNRHKDEYEKYKSLVDEIR- 297
Query: 641 KKLKLDSFVRASSSTNEKTLKKLSTLXXXXXXXXXXXXXXNRTRY 775
K++S +R S E LK L N+++Y
Sbjct: 298 ---KIESRLRELKSHYEDYLKLTKQLEIIKGDIEKLKEFINKSKY 339
>sp|Q8STA9|Y5G8_ENCCU Hypothetical protein ECU05_1680/ECU11_0050
Length = 612
Score = 42.0 bits (97), Expect = 0.002
Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 15/178 (8%)
Frame = +2
Query: 218 VDETEKG--LFIEYIVK------DPEQEHLQKKRRRTEQGFL-----DDDEKHFITLMEK 358
VDE E G L++EY V D +EH R + L D+ ++ +I +
Sbjct: 240 VDEDEIGHCLYLEYTVVNTSLLLDAHREHGGDVTRELVKQMLLGKKGDEIDRRYINKVAN 299
Query: 359 MLSKKQKIDSEEVEIDQPTDLIKKDEE--KIAFNFVKTEQKIESIMKIEDEKKLKRNEET 532
++ ++Q+ + E+ E ++ + KK EE + K E+K E K ++EKK ++ EE
Sbjct: 300 VVKERQRREMEKKEEEKKKEEEKKKEEEKRKEEKKKKKEEKKEEKKKKKEEKKEEKKEEK 359
Query: 533 NKSRFETEKIVEFNENSLRKFHESDNEKKIVDDKNIKKLKLDSFVRASSSTNEKTLKK 706
+ + E +K + E K +S E + ++ + +++ R + +E K+
Sbjct: 360 KEEKKEEKKEEKKEEKKEEKSGKSLREGEASEEAEMPSVEVGGARRKTGKKSEGGRKR 417
>sp|Q9JJ11|TACC3_MOUSE Transforming acidic coiled-coil containing protein 3 (ARNT
interacting protein)
Length = 631
Score = 40.8 bits (94), Expect = 0.005
Identities = 46/198 (23%), Positives = 91/198 (45%), Gaps = 1/198 (0%)
Frame = +2
Query: 59 LDVLRRQFGGKRTQANVVYQEYIKDKEHVHMNSTKFSTLNGFVRCLDKMKICRVDETEKG 238
+DVL+ NV+ QE ++ K +TK+ + V +K+ ++E EK
Sbjct: 424 VDVLKYSQKDLDAVVNVMQQENLELKSKYEDLNTKYLEMGKSVDEFEKIAYKSLEEAEKQ 483
Query: 239 LFIEYIVKDPEQEHLQKKRRRTEQGFLDDDEKHFITLMEKMLSKKQKIDSEEVEIDQPTD 418
++ I +D Q+ L K R L+ EK F L ++ +K+ I+ + + +
Sbjct: 484 RELKEIAEDKIQKVL--KERDQLNADLNSMEKSFSDLFKRFEKRKEVIEGYQ----KNEE 537
Query: 419 LIKKDEEKIAFNFVKTEQKIESIMKIEDEKKLK-RNEETNKSRFETEKIVEFNENSLRKF 595
+KK + K Q+ ++ +KI E+KL+ NEE + + + V + SLRK
Sbjct: 538 SLKKYVGECIVKIEKEGQRYQA-LKIHAEEKLRLANEEIAQVHSKAQAEVLALQASLRKA 596
Query: 596 HESDNEKKIVDDKNIKKL 649
++ ++ ++ K++
Sbjct: 597 QMQNHSLEMTLEQKTKEI 614
>sp|O67825|IF2_AQUAE Translation initiation factor IF-2
Length = 805
Score = 40.8 bits (94), Expect = 0.005
Identities = 38/178 (21%), Positives = 86/178 (48%), Gaps = 12/178 (6%)
Frame = +2
Query: 221 DETEKGLFIEYIVKDPEQEHLQKKRRRTEQGFLDD--DEKHFITLMEKMLSKKQKIDSEE 394
+E EK + + P + +K+ + E+ +++ +EK ++E++ KK++ + +E
Sbjct: 61 EEEEKEEVVTEQAQAPAEVEEKKEEEKKEEVIVEEVVEEKKPEVIVEEIEEKKEEEEKKE 120
Query: 395 VEIDQPT--DLIK-------KDEEKIAFNFVKTEQKIESIMKIEDEKKLKRNEETNKSRF 547
E + + +LIK K++EK + E+K+ + ++E+K ++ EE +
Sbjct: 121 EEKPKKSVEELIKEILEKKEKEKEKKKVEKERKEEKVRVVEVKKEERKEEKKEEKKEEEK 180
Query: 548 ETEKIVEFNENSLRKF-HESDNEKKIVDDKNIKKLKLDSFVRASSSTNEKTLKKLSTL 718
K+ + +RK H + EKK + + +K K + V+ T+++L+ L
Sbjct: 181 PKIKMSKKEREIMRKLEHAVEKEKKKQEKREKEKKKKEEEVKIIYIPEVITVRELAEL 238
>sp|P16947|M49_STRP9 M protein, serotype 49 precursor
Length = 389
Score = 40.0 bits (92), Expect = 0.008
Identities = 36/157 (22%), Positives = 71/157 (45%)
Frame = +2
Query: 248 EYIVKDPEQEHLQKKRRRTEQGFLDDDEKHFITLMEKMLSKKQKIDSEEVEIDQPTDLIK 427
EY+ + E E QK + E +KH+ +K KQ+ + + +Q +
Sbjct: 80 EYLERIGELEERQKNLEKLEHQSQVAADKHYQEQAKKHQEYKQEQEERQKNQEQLERKYQ 139
Query: 428 KDEEKIAFNFVKTEQKIESIMKIEDEKKLKRNEETNKSRFETEKIVEFNENSLRKFHESD 607
++ EK ++ +Q++E+ +I + + + + SR E +K VE + +L H+
Sbjct: 140 REVEKRYQEQLQKQQQLETEKQISEASRKSLSRDLEASR-EAKKKVEADLAALTAEHQKL 198
Query: 608 NEKKIVDDKNIKKLKLDSFVRASSSTNEKTLKKLSTL 718
E+K + D + + L D + AS +K L+ L
Sbjct: 199 KEEKQISDASRQGLSRD--LEASREAKKKVEADLAAL 233
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,511,280
Number of Sequences: 369166
Number of extensions: 1386195
Number of successful extensions: 7655
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7385
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)