Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_A03
(451 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 219 2e-57
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 219 2e-57
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 219 2e-57
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 219 2e-57
sp|P02553|TBA_LYTPI Tubulin alpha chain 219 2e-57
sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6... 218 4e-57
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 218 4e-57
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 218 4e-57
sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6) 218 5e-57
sp|P09645|TBA8_CHICK Tubulin alpha-8 chain 218 5e-57
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 219 bits (558), Expect = 2e-57
Identities = 104/106 (98%), Positives = 105/106 (99%)
Frame = +1
Query: 1 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 180
IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 394
Query: 181 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSV 318
FDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DSV
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 219 bits (558), Expect = 2e-57
Identities = 104/106 (98%), Positives = 105/106 (99%)
Frame = +1
Query: 1 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 180
IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 394
Query: 181 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSV 318
FDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DSV
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 219 bits (558), Expect = 2e-57
Identities = 104/106 (98%), Positives = 105/106 (99%)
Frame = +1
Query: 1 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 180
IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 394
Query: 181 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSV 318
FDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DSV
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 219 bits (558), Expect = 2e-57
Identities = 104/106 (98%), Positives = 105/106 (99%)
Frame = +1
Query: 1 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 180
IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 394
Query: 181 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSV 318
FDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DSV
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P02553|TBA_LYTPI Tubulin alpha chain
Length = 161
Score = 219 bits (558), Expect = 2e-57
Identities = 104/106 (98%), Positives = 105/106 (99%)
Frame = +1
Query: 1 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 180
IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK
Sbjct: 45 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 104
Query: 181 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSV 318
FDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DSV
Sbjct: 105 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 150
>sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6) (Alpha-tubulin isotype
M-alpha-6)
sp|P68365|TBA3_CRIGR Tubulin alpha-3 chain (Alpha-tubulin 3) (Alpha-tubulin III)
Length = 449
Score = 218 bits (556), Expect = 4e-57
Identities = 103/105 (98%), Positives = 105/105 (100%)
Frame = +1
Query: 1 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 180
IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 394
Query: 181 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADS 315
FDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVGADS
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADS 439
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 218 bits (556), Expect = 4e-57
Identities = 103/106 (97%), Positives = 105/106 (99%)
Frame = +1
Query: 1 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 180
IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 394
Query: 181 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSV 318
FDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DSV
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 218 bits (556), Expect = 4e-57
Identities = 103/106 (97%), Positives = 105/106 (99%)
Frame = +1
Query: 1 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 180
IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK
Sbjct: 296 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 355
Query: 181 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSV 318
FDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DSV
Sbjct: 356 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 401
>sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6)
Length = 449
Score = 218 bits (555), Expect = 5e-57
Identities = 102/105 (97%), Positives = 105/105 (100%)
Frame = +1
Query: 1 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 180
IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTA+AEAWARLDHK
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHK 394
Query: 181 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADS 315
FDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVGADS
Sbjct: 395 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADS 439
>sp|P09645|TBA8_CHICK Tubulin alpha-8 chain
Length = 324
Score = 218 bits (555), Expect = 5e-57
Identities = 103/106 (97%), Positives = 105/106 (99%)
Frame = +1
Query: 1 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 180
IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK
Sbjct: 210 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 269
Query: 181 FDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADSV 318
FDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG DS+
Sbjct: 270 FDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGTDSM 315
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,443,215
Number of Sequences: 369166
Number of extensions: 790369
Number of successful extensions: 2866
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2682
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2444192520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)