Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_A01
(848 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) ... 268 2e-71
sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathe... 264 3e-70
sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted ... 263 6e-70
sp|P25975|CATL_BOVIN Cathepsin L precursor [Contains: Cathe... 260 3e-69
sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Catheps... 256 4e-68
sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathe... 249 5e-66
sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted ... 248 1e-65
sp|P07154|CATL_RAT Cathepsin L precursor (Major excreted pr... 248 2e-65
sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor 244 2e-64
sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (C... 243 6e-64
>sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) (Cathepsin U)
Length = 334
Score = 268 bits (684), Expect = 2e-71
Identities = 143/283 (50%), Positives = 181/283 (63%), Gaps = 6/283 (2%)
Frame = +3
Query: 15 LSLVVVAI-----TAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYI 179
LSLV+ A +AVP KF N L+ +W +K T R Y + RR +WE+N+K I
Sbjct: 3 LSLVLAAFCLGIASAVP-KFDQN--LDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMI 59
Query: 180 QKHNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPAS 359
+ HN EY GKH +++ +N F DMTNEEF+ + +G + + +G + P + LP S
Sbjct: 60 ELHNGEYSQGKHGFTMAMNAFGDMTNEEFR-QMMGCFRNQKFRKGKVFREPLFLD-LPKS 117
Query: 360 VDWRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXX 539
VDWR+KGYVTPVKNQ+QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS
Sbjct: 118 VDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQG 177
Query: 540 XXXXLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLA 716
M AF+Y+K+ G++SE YPY A D CK P V TGFT + E L
Sbjct: 178 CNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALM 237
Query: 717 NAVATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVL 845
AVATVGP+SVA+DAGH+SFQ YKSGIY E CS+ LDHGVL
Sbjct: 238 KAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVL 280
>sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 333
Score = 264 bits (674), Expect = 3e-70
Identities = 140/279 (50%), Positives = 173/279 (62%), Gaps = 2/279 (0%)
Frame = +3
Query: 15 LSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHNL 194
L+ + + I + KF + LN +W +K T R Y + RR +WE+N+K I+ HN
Sbjct: 7 LTALCLGIASAAPKF--DQSLNAQWYQWKATHRRLYGMNEEGWRRAVWEKNMKMIELHNR 64
Query: 195 EYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWRQ 374
EY GKH +++ +N F DMTNEEF+ G K +G + P +P SVDWR+
Sbjct: 65 EYSQGKHGFTMAMNAFGDMTNEEFRQVMNGFQNQKHK-KGKMFQEPL-FAEIPKSVDWRE 122
Query: 375 KGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXXL 554
KGYVTPVKNQ QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS L
Sbjct: 123 KGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNEGCNGGL 182
Query: 555 MDNAFRYIKDQ-GIESEGDYPYTATD-GTCKRNPSKIVTKCTGFTDIQSQNETDLANAVA 728
MDNAFRY+KD G++SE YPY D TC P TGF D+ Q E L AVA
Sbjct: 183 MDNAFRYVKDNGGLDSEESYPYLGRDTETCNYKPECSAANDTGFVDL-PQREKALMKAVA 241
Query: 729 TVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVL 845
T+GP+SVAIDAGH SFQ YKSGIY + CS+ LDHGVL
Sbjct: 242 TLGPISVAIDAGHQSFQFYKSGIYFDPDCSSKDLDHGVL 280
>sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted protein) (MEP) [Contains:
Cathepsin L heavy chain; Cathepsin L light chain]
Length = 333
Score = 263 bits (671), Expect = 6e-70
Identities = 138/278 (49%), Positives = 170/278 (61%), Gaps = 1/278 (0%)
Frame = +3
Query: 15 LSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHNL 194
L L + + + L +W +K R Y + RR +WE+N+K I+ HN
Sbjct: 5 LILAAFCLGIASATLTFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQ 64
Query: 195 EYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWRQ 374
EY GKH++++ +N F DMT+EEF+ G KP +G + P P SVDWR+
Sbjct: 65 EYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPR-KGKVFQEPLFYEA-PRSVDWRE 122
Query: 375 KGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXXL 554
KGYVTPVKNQ QCGSCW+FSATG+LEGQ FRK RLIS SEQ LVDCS L
Sbjct: 123 KGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGL 182
Query: 555 MDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANAVAT 731
MD AF+Y++D G++SE YPY AT+ +CK NP V TGF DI Q E L AVAT
Sbjct: 183 MDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQ-EKALMKAVAT 241
Query: 732 VGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVL 845
VGP+SVAIDAGH SF YK GIY E CS+ +DHGVL
Sbjct: 242 VGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVL 279
>sp|P25975|CATL_BOVIN Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 260 bits (665), Expect = 3e-69
Identities = 141/279 (50%), Positives = 170/279 (60%), Gaps = 2/279 (0%)
Frame = +3
Query: 15 LSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHNL 194
L+++ + + + K N L+ W +K T R Y + RR +WE+N K I HN
Sbjct: 7 LTVLCLGVASAAPKLDPN--LDAHWHQWKATHRRLYGMNEEEWRRAVWEKNKKIIDLHNQ 64
Query: 195 EYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWRQ 374
EY GKH + + +N F DMTNEEF+ G K +G + P + V P SVDW +
Sbjct: 65 EYSEGKHAFRMAMNAFGDMTNEEFRQVMNGFQNQKHK-KGKLFHEPLLVDV-PKSVDWTK 122
Query: 375 KGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXXL 554
KGYVTPVKNQ QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS L
Sbjct: 123 KGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNQGCNGGL 182
Query: 555 MDNAFRYIKDQ-GIESEGDYPYTATD-GTCKRNPSKIVTKCTGFTDIQSQNETDLANAVA 728
MDNAF+YIKD G++SE YPY ATD +C P TGF DI Q E L AVA
Sbjct: 183 MDNAFQYIKDNGGLDSEESYPYLATDTNSCNYKPECSAANDTGFVDI-PQREKALMKAVA 241
Query: 729 TVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVL 845
TVGP+SVAIDAGH SFQ YKSGIY + CS LDHGVL
Sbjct: 242 TVGPISVAIDAGHTSFQFYKSGIYYDPDCSCKDLDHGVL 280
>sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 256 bits (655), Expect = 4e-68
Identities = 138/279 (49%), Positives = 173/279 (62%), Gaps = 2/279 (0%)
Frame = +3
Query: 15 LSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHNL 194
L+ + + I + K N L+ +W +K T GR Y + RR +WE+N+K I+ HN
Sbjct: 7 LTALCLGIASAAPKLDQN--LDADWYKWKATHGRLYGMNEEGWRRAVWEKNMKMIELHNQ 64
Query: 195 EYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWRQ 374
EY GKH +S+ +N F DMTNEEF+ G K +G + + V P SVDWR+
Sbjct: 65 EYSQGKHGFSMAMNAFGDMTNEEFRQVMNGFQNQKHK-KGKVFHESLVLEV-PKSVDWRE 122
Query: 375 KGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXXL 554
KGYVT VKNQ QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS L
Sbjct: 123 KGYVTAVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGL 182
Query: 555 MDNAFRYIKDQ-GIESEGDYPYTATD-GTCKRNPSKIVTKCTGFTDIQSQNETDLANAVA 728
MDNAF+Y+KD G+++E YPY + +C P TGF DI Q E L AVA
Sbjct: 183 MDNAFQYVKDNGGLDTEESYPYLGRETNSCTYKPECSAANDTGFVDI-PQREKALMKAVA 241
Query: 729 TVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVL 845
TVGP+SVAIDAGH+SFQ YKSGIY + CS+ LDHGVL
Sbjct: 242 TVGPISVAIDAGHSSFQFYKSGIYYDPDCSSKDLDHGVL 280
>sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 339
Score = 249 bits (637), Expect = 5e-66
Identities = 136/288 (47%), Positives = 176/288 (61%), Gaps = 9/288 (3%)
Frame = +3
Query: 9 RGLSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKY-DELTDITRRLIWEQNLKYIQK 185
R + + ++A+ A+ Q S + EEW TYK + Y +E+ + R I+ +N I K
Sbjct: 2 RTVLVALLALVALTQAISPLDLIKEEWHTYKLQHRKNYANEVEERFRMKIFNENRHKIAK 61
Query: 186 HNLEYDLGKHTYSLGLNQFADMTNEEFKAKYLG-------IMKTKPTLEGSTYMAPENIG 344
HN + GK +Y LGLN++ADM + EFK G +M+ + L G+TY+ P ++
Sbjct: 62 HNQLFAQGKVSYKLGLNKYADMLHHEFKETMNGYNHTLRQLMRERTGLVGATYIPPAHVT 121
Query: 345 VLPASVDWRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXX 524
V P SVDWR+ G VT VK+Q CGSCW+FS+TG+LEGQ+FRK L+S SEQ LVDCS
Sbjct: 122 V-PKSVDWREHGAVTGVKDQGHCGSCWAFSSTGALEGQHFRKAGVLVSLSEQNLVDCSTK 180
Query: 525 XXXXXXXXXLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQN 701
LMDNAFRYIKD GI++E YPY D +C N + I TGF DI +
Sbjct: 181 YGNNGCNGGLMDNAFRYIKDNGGIDTEKSYPYEGIDDSCHFNKATIGATDTGFVDIPEGD 240
Query: 702 ETDLANAVATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVL 845
E + AVAT+GPVSVAIDA H SFQLY G+YNE C LDHGVL
Sbjct: 241 EEKMKKAVATMGPVSVAIDASHESFQLYSEGVYNEPECDEQNLDHGVL 288
>sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted protein) (MEP) (p39 cysteine
proteinase) [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 334
Score = 248 bits (634), Expect = 1e-65
Identities = 136/278 (48%), Positives = 170/278 (61%), Gaps = 1/278 (0%)
Frame = +3
Query: 15 LSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHNL 194
L+++ + KF + + EW +K+T R Y + RR IWE+N++ IQ HN
Sbjct: 7 LAVLCLGTALATPKF--DQTFSAEWHQWKSTHRRLYGTNEEEWRRAIWEKNMRMIQLHNG 64
Query: 195 EYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWRQ 374
EY G+H +S+ +N F DMTNEEF+ G K +G + P + + P SVDWR+
Sbjct: 65 EYSNGQHGFSMEMNAFGDMTNEEFRQVVNGYRHQKHK-KGRLFQEPLMLKI-PKSVDWRE 122
Query: 375 KGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXXL 554
KG VTPVKNQ QCGSCW+FSA+G LEGQ F K +LIS SEQ LVDCS L
Sbjct: 123 KGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHAQGNQGCNGGL 182
Query: 555 MDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANAVAT 731
MD AF+YIK+ G++SE YPY A DG+CK V TGF DI Q E L AVAT
Sbjct: 183 MDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEFAVANDTGFVDI-PQQEKALMKAVAT 241
Query: 732 VGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVL 845
VGP+SVA+DA H S Q Y SGIY E +CS+ LDHGVL
Sbjct: 242 VGPISVAMDASHPSLQFYSSGIYYEPNCSSKNLDHGVL 279
>sp|P07154|CATL_RAT Cathepsin L precursor (Major excreted protein) (MEP) (Cyclic
protein 2) (CP-2) [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 334
Score = 248 bits (633), Expect = 2e-65
Identities = 134/278 (48%), Positives = 170/278 (61%), Gaps = 1/278 (0%)
Frame = +3
Query: 15 LSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHNL 194
L+++ + KF + N +W +K+T R Y + RR +WE+N++ IQ HN
Sbjct: 7 LAVLCLGTALATPKF--DQTFNAQWHQWKSTHRRLYGTNEEEWRRAVWEKNMRMIQLHNG 64
Query: 195 EYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWRQ 374
EY GKH +++ +N F DMTNEEF+ G K +G + P + + P +VDWR+
Sbjct: 65 EYSNGKHGFTMEMNAFGDMTNEEFRQIVNGYRHQKHK-KGRLFQEPLMLQI-PKTVDWRE 122
Query: 375 KGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXXL 554
KG VTPVKNQ QCGSCW+FSA+G LEGQ F K +LIS SEQ LVDCS L
Sbjct: 123 KGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHDQGNQGCNGGL 182
Query: 555 MDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANAVAT 731
MD AF+YIK+ G++SE YPY A DG+CK V TGF DI Q E L AVAT
Sbjct: 183 MDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEYAVANDTGFVDI-PQQEKALMKAVAT 241
Query: 732 VGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVL 845
VGP+SVA+DA H S Q Y SGIY E +CS+ LDHGVL
Sbjct: 242 VGPISVAMDASHPSLQFYSSGIYYEPNCSSKDLDHGVL 279
>sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor
Length = 326
Score = 244 bits (624), Expect = 2e-64
Identities = 122/278 (43%), Positives = 170/278 (61%)
Frame = +3
Query: 15 LSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHNL 194
+ L ++A+ V V ++ W +K + ++Y+ D RR IWE+N+K+IQ+HNL
Sbjct: 1 MRLFILAVLTV----GVLGSNDDLWHQWKRMYNKEYNGADDQHRRNIWEKNVKHIQEHNL 56
Query: 195 EYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWRQ 374
+DLG TY+LGLNQF DMT EEFKAKYL M + N +P +DWR+
Sbjct: 57 RHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASDILSHGVPYEANNRAVPDKIDWRE 116
Query: 375 KGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXXL 554
GYVT VK+Q CGSCW+FS TG++EGQY + ISFSEQQLVDCS L
Sbjct: 117 SGYVTEVKDQGNCGSCWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSGPWGNNGCSGGL 176
Query: 555 MDNAFRYIKDQGIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANAVATV 734
M+NA++Y+K G+E+E YPYTA +G C+ N V K TG+ + S +E +L N V
Sbjct: 177 MENAYQYLKQFGLETESSYPYTAVEGQCRYNKQLGVAKVTGYYTVHSGSEVELKNLVGAR 236
Query: 735 GPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLA 848
P +VA+D + F +Y+SGIY ++CS +++H VLA
Sbjct: 237 RPAAVAVDV-ESDFMMYRSGIYQSQTCSPLRVNHAVLA 273
>sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (Cathepsin X) (Cathepsin O2)
Length = 329
Score = 243 bits (619), Expect = 6e-64
Identities = 132/281 (46%), Positives = 171/281 (60%), Gaps = 3/281 (1%)
Frame = +3
Query: 15 LSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTD-ITRRLIWEQNLKYIQKHN 191
L L VV+ P++ L+ WE +K T ++Y+ D I+RRLIWE+NLKYI HN
Sbjct: 7 LLLPVVSFALYPEEI-----LDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHN 61
Query: 192 LEYDLGKHTYSLGLNQFADMTNEEFKAKYLGI-MKTKPTLEGSTYMAPENIGVLPASVDW 368
LE LG HTY L +N DMT+EE K G+ + + T PE G P SVD+
Sbjct: 62 LEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDY 121
Query: 369 RQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXX 548
R+KGYVTPVKNQ QCGSCW+FS+ G+LEGQ +K +L++ S Q LVDC
Sbjct: 122 RKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC--VSENDGCGG 179
Query: 549 XLMDNAFRYI-KDQGIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANAV 725
M NAF+Y+ K++GI+SE YPY + +C NP+ KC G+ +I NE L AV
Sbjct: 180 GYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAV 239
Query: 726 ATVGPVSVAIDAGHASFQLYKSGIYNEESCSTTQLDHGVLA 848
A VGPVSVAIDA SFQ Y G+Y +ESC++ L+H VLA
Sbjct: 240 ARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLA 280
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,296,884
Number of Sequences: 369166
Number of extensions: 1777530
Number of successful extensions: 5132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4765
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)