Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_P17
(829 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q75WE7|LHR2A_RAT Loss of heterozygosity 11 chromosomal r... 43 0.001
sp|Q99KC8|LHR2A_MOUSE Loss of heterozygosity 11 chromosomal... 40 0.008
sp|O00534|LHR2A_HUMAN Loss of heterozygosity 11 chromosomal... 40 0.008
sp|Q57969|NIKR_METJA Putative nickel-responsive regulator 39 0.017
sp|Q58168|Y758_METJA Hypothetical protein MJ0758 33 1.3
sp|Q7TQA6|T2R38_MOUSE Putative taste receptor type 2 member... 32 1.6
sp|P59533|T2R38_HUMAN Taste receptor type 2 member 38 (T2R3... 32 2.8
sp|Q697L4|T2R38_GORGO Taste receptor type 2 member 38 (T2R38) 32 2.8
sp|Q697L5|T2R38_PANTR Taste receptor type 2 member 38 (T2R38) 32 2.8
sp|Q89AA5|CYOC_BUCBP Cytochrome o ubiquinol oxidase subunit... 32 2.8
>sp|Q75WE7|LHR2A_RAT Loss of heterozygosity 11 chromosomal region 2 gene A protein
homolog (Mast cell surface antigen 1) (Masa-1)
Length = 822
Score = 43.1 bits (100), Expect = 0.001
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +2
Query: 440 LIDQQNINGSWNYSENILSKIDIDAADFQNKKPKTTDE--IWLTVLIYQFLVTKEQSREK 613
LI QN NGSW EN+ + D + P + W T+L +L Q +
Sbjct: 694 LIFLQNANGSWKLDENLTKILGTTLEDTKAANPSQHGDPSAWATILAVLWLHANGQDLKC 753
Query: 614 EWRLVAKKAKQWIENN 661
EW L+ +KA W+ ++
Sbjct: 754 EWELLERKAVAWLHDH 769
>sp|Q99KC8|LHR2A_MOUSE Loss of heterozygosity 11 chromosomal region 2 gene A protein
homolog
Length = 793
Score = 40.0 bits (92), Expect = 0.008
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +2
Query: 440 LIDQQNINGSWNYSENILSKIDIDAADFQNKKPKTTDE--IWLTVLIYQFLVTKEQSREK 613
LI Q NGSW E++ + + D + P ++ W TVL +L +
Sbjct: 691 LISLQKANGSWELDEDLTKILGTKSKDIKAANPAKHEDPSAWSTVLAVVWLHANGTDLKC 750
Query: 614 EWRLVAKKAKQWIENN 661
EW L+ +KA W+ ++
Sbjct: 751 EWELLERKAVAWLHDH 766
>sp|O00534|LHR2A_HUMAN Loss of heterozygosity 11 chromosomal region 2 gene A protein
(Breast cancer suppressor candidate 1) (BCSC-1)
Length = 786
Score = 40.0 bits (92), Expect = 0.008
Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Frame = +2
Query: 440 LIDQQNINGSWNYSENILSKIDIDAADFQNKKPKTTDEI--WLTVLIYQFLVTKEQSREK 613
LI QN NGSW+ +E++ + + + +P + W T+L +L + + +
Sbjct: 684 LIYHQNANGSWDLNEDLAKILGMSLEEIMAAQPAELVDSSGWATILAVIWLHSNGKDLKC 743
Query: 614 EWRLVAKKAKQWIENNVNDRNLLESIFKISLELFH*TLFKTFID 745
EW L+ +KA W+ + + + S+ K ++ T K+ +D
Sbjct: 744 EWELLERKAVAWMRAHAG--STMPSVVKAAI-----TFLKSSVD 780
>sp|Q57969|NIKR_METJA Putative nickel-responsive regulator
Length = 141
Score = 38.9 bits (89), Expect = 0.017
Identities = 27/74 (36%), Positives = 37/74 (50%)
Frame = -3
Query: 410 RILIQLYKIKHLLVVQAEEEDNVKKWEIRNHHHHIAQERRTELHHLYTSYALASPCISLE 231
R I+ Y IKH + E E I NHH E+ TE+ H YT +A +L
Sbjct: 36 RDAIRDYIIKHKWIHSLEGERAGSISVIYNHHASDVMEKITEIQHNYTDIIVA----TLH 91
Query: 230 LHMPQNDNCLHTLL 189
LH+ +D+CL T+L
Sbjct: 92 LHL-DHDHCLETIL 104
>sp|Q58168|Y758_METJA Hypothetical protein MJ0758
Length = 159
Score = 32.7 bits (73), Expect = 1.3
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = -1
Query: 586 KKLINQNSKPYFICCFRFFVLKISSIDINFRKNIFTIIPRT 464
KKL+ +N KPY +C F + + +I S+ N R + ++P T
Sbjct: 109 KKLMEENLKPY-VCPFMYLLSEIYSVSNNCRLMLSDVVPET 148
>sp|Q7TQA6|T2R38_MOUSE Putative taste receptor type 2 member 38 (T2R38) (mT2r31)
Length = 331
Score = 32.3 bits (72), Expect = 1.6
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +3
Query: 126 QNIRIQTVLKTAVKTALKNSIKKSMQAIIVLWHMEFQ*NAWRCQCVG---CVKMVEFRPS 296
Q + + ++ A +K+ + + QAI+ LW + Q + W C+ C K+V F +
Sbjct: 68 QGLLLLDAIQLACFQQMKDPLSHNYQAILTLWMIANQVSLWLAACLSLLYCSKIVRFSHT 127
Query: 297 LLCNVMVVVSD--LPFLYIVLFL 359
+V VS L L +VL L
Sbjct: 128 FPLHVASWVSRRFLQMLLVVLLL 150
>sp|P59533|T2R38_HUMAN Taste receptor type 2 member 38 (T2R38) (T2R61) (PTC bitter taste
receptor)
Length = 333
Score = 31.6 bits (70), Expect = 2.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 174 LKNSIKKSMQAIIVLWHMEFQ*NAWRCQCVG---CVKMVEFRPSLL 302
L + S QAII+LW + Q N W C+ C K++ F + L
Sbjct: 84 LSEPLNHSYQAIIMLWMIANQANLWLAACLSLLYCSKLIRFSHTFL 129
>sp|Q697L4|T2R38_GORGO Taste receptor type 2 member 38 (T2R38)
Length = 333
Score = 31.6 bits (70), Expect = 2.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 174 LKNSIKKSMQAIIVLWHMEFQ*NAWRCQCVG---CVKMVEFRPSLL 302
L + S QAII+LW + Q N W C+ C K++ F + L
Sbjct: 84 LSEPLNHSYQAIIMLWMIANQANLWLAACLSLLYCSKLIRFSHTFL 129
>sp|Q697L5|T2R38_PANTR Taste receptor type 2 member 38 (T2R38)
Length = 333
Score = 31.6 bits (70), Expect = 2.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +3
Query: 174 LKNSIKKSMQAIIVLWHMEFQ*NAWRCQCVG---CVKMVEFRPSLL 302
L + S QAII+LW + Q N W C+ C K++ F + L
Sbjct: 84 LSEPLNHSYQAIIMLWMIANQANLWLAACLSLLYCSKLIRFSHTFL 129
>sp|Q89AA5|CYOC_BUCBP Cytochrome o ubiquinol oxidase subunit III
Length = 194
Score = 31.6 bits (70), Expect = 2.8
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 330 LPFLYIVLFLRLHHQEVFYFIKLNQNPTSSQLM*SFF*LI--NKISMVLGIIVKIFFLKL 503
+ FL +LF+ L E F+ I L PT S + SFF LI + I ++ G+I I +K
Sbjct: 94 ITFLLGLLFVFLELFEFFHLINLGFGPTRSGFLSSFFVLIATHGIHVISGLIWIIVMIKY 153
Query: 504 I 506
+
Sbjct: 154 V 154
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,833,841
Number of Sequences: 369166
Number of extensions: 1652814
Number of successful extensions: 4746
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4728
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)