Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_P16
(612 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90751|BMP2_CHICK Bone morphogenetic protein 2 precursor... 105 1e-22
sp|P12643|BMP2_HUMAN Bone morphogenetic protein 2 precursor... 104 2e-22
sp|P49001|BMP2_RAT Bone morphogenetic protein 2 precursor (... 104 2e-22
sp|O19006|BMP2_DAMDA Bone morphogenetic protein 2 precursor... 104 2e-22
sp|O46564|BMP2_RABIT Bone morphogenetic protein 2 precursor... 104 2e-22
sp|P21274|BMP2_MOUSE Bone morphogenetic protein 2 precursor... 104 2e-22
sp|P25703|BMP2A_XENLA Bone morphogenetic protein 2-A precur... 104 2e-22
sp|P30884|BMP2B_XENLA Bone morphogenetic protein 2-II precu... 104 2e-22
sp|P30885|BMP4_XENLA Bone morphogenetic protein 4 precursor... 103 3e-22
sp|O46576|BMP4_RABIT Bone morphogenetic protein 4 precursor... 102 6e-22
>sp|Q90751|BMP2_CHICK Bone morphogenetic protein 2 precursor (BMP-2)
Length = 353
Score = 105 bits (261), Expect = 1e-22
Identities = 44/104 (42%), Positives = 67/104 (64%)
Frame = +3
Query: 162 CTLYPMKVDFDRMGWNQWIIGPRSFNAGVCAGPCPYPLGQSYHPTNHAVVQSIWYHLNPN 341
C +P+ VDF+ +GWN WI+ P ++A C G CP+PL + TNHA+VQ++ +N
Sbjct: 253 CKRHPLYVDFNDVGWNDWIVAPPGYSAFYCHGECPFPLADHLNSTNHAIVQTL---VNSV 309
Query: 342 NNIIGPVCCVPHDLKQLRMLFYNNDRLVVLKTYDNMIVKSCGCK 473
N+ I CCVP +L + ML+ + + VVLK Y +M+V+ CGC+
Sbjct: 310 NSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR 353
>sp|P12643|BMP2_HUMAN Bone morphogenetic protein 2 precursor (BMP-2) (BMP-2A)
Length = 396
Score = 104 bits (260), Expect = 2e-22
Identities = 44/104 (42%), Positives = 66/104 (63%)
Frame = +3
Query: 162 CTLYPMKVDFDRMGWNQWIIGPRSFNAGVCAGPCPYPLGQSYHPTNHAVVQSIWYHLNPN 341
C +P+ VDF +GWN WI+ P ++A C G CP+PL + TNHA+VQ++ +N
Sbjct: 296 CKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTL---VNSV 352
Query: 342 NNIIGPVCCVPHDLKQLRMLFYNNDRLVVLKTYDNMIVKSCGCK 473
N+ I CCVP +L + ML+ + + VVLK Y +M+V+ CGC+
Sbjct: 353 NSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR 396
>sp|P49001|BMP2_RAT Bone morphogenetic protein 2 precursor (BMP-2) (BMP-2A)
Length = 393
Score = 104 bits (260), Expect = 2e-22
Identities = 44/104 (42%), Positives = 66/104 (63%)
Frame = +3
Query: 162 CTLYPMKVDFDRMGWNQWIIGPRSFNAGVCAGPCPYPLGQSYHPTNHAVVQSIWYHLNPN 341
C +P+ VDF +GWN WI+ P ++A C G CP+PL + TNHA+VQ++ +N
Sbjct: 293 CKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTL---VNSV 349
Query: 342 NNIIGPVCCVPHDLKQLRMLFYNNDRLVVLKTYDNMIVKSCGCK 473
N+ I CCVP +L + ML+ + + VVLK Y +M+V+ CGC+
Sbjct: 350 NSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR 393
>sp|O19006|BMP2_DAMDA Bone morphogenetic protein 2 precursor (BMP-2)
Length = 396
Score = 104 bits (260), Expect = 2e-22
Identities = 44/104 (42%), Positives = 66/104 (63%)
Frame = +3
Query: 162 CTLYPMKVDFDRMGWNQWIIGPRSFNAGVCAGPCPYPLGQSYHPTNHAVVQSIWYHLNPN 341
C +P+ VDF +GWN WI+ P ++A C G CP+PL + TNHA+VQ++ +N
Sbjct: 296 CKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTL---VNSV 352
Query: 342 NNIIGPVCCVPHDLKQLRMLFYNNDRLVVLKTYDNMIVKSCGCK 473
N+ I CCVP +L + ML+ + + VVLK Y +M+V+ CGC+
Sbjct: 353 NSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR 396
>sp|O46564|BMP2_RABIT Bone morphogenetic protein 2 precursor (BMP-2)
Length = 395
Score = 104 bits (260), Expect = 2e-22
Identities = 44/104 (42%), Positives = 66/104 (63%)
Frame = +3
Query: 162 CTLYPMKVDFDRMGWNQWIIGPRSFNAGVCAGPCPYPLGQSYHPTNHAVVQSIWYHLNPN 341
C +P+ VDF +GWN WI+ P ++A C G CP+PL + TNHA+VQ++ +N
Sbjct: 295 CKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTL---VNSV 351
Query: 342 NNIIGPVCCVPHDLKQLRMLFYNNDRLVVLKTYDNMIVKSCGCK 473
N+ I CCVP +L + ML+ + + VVLK Y +M+V+ CGC+
Sbjct: 352 NSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR 395
>sp|P21274|BMP2_MOUSE Bone morphogenetic protein 2 precursor (BMP-2) (BMP-2A)
Length = 394
Score = 104 bits (260), Expect = 2e-22
Identities = 44/104 (42%), Positives = 66/104 (63%)
Frame = +3
Query: 162 CTLYPMKVDFDRMGWNQWIIGPRSFNAGVCAGPCPYPLGQSYHPTNHAVVQSIWYHLNPN 341
C +P+ VDF +GWN WI+ P ++A C G CP+PL + TNHA+VQ++ +N
Sbjct: 294 CKRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTL---VNSV 350
Query: 342 NNIIGPVCCVPHDLKQLRMLFYNNDRLVVLKTYDNMIVKSCGCK 473
N+ I CCVP +L + ML+ + + VVLK Y +M+V+ CGC+
Sbjct: 351 NSKIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR 394
>sp|P25703|BMP2A_XENLA Bone morphogenetic protein 2-A precursor (BMP-2-I)
Length = 398
Score = 104 bits (259), Expect = 2e-22
Identities = 44/104 (42%), Positives = 65/104 (62%)
Frame = +3
Query: 162 CTLYPMKVDFDRMGWNQWIIGPRSFNAGVCAGPCPYPLGQSYHPTNHAVVQSIWYHLNPN 341
C +P+ VDF +GWN WI+ P ++A C G CP+PL + TNHA+VQ++ +N
Sbjct: 298 CRRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTL---VNSV 354
Query: 342 NNIIGPVCCVPHDLKQLRMLFYNNDRLVVLKTYDNMIVKSCGCK 473
N I CCVP +L + ML+ + + VVLK Y +M+V+ CGC+
Sbjct: 355 NTNIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR 398
>sp|P30884|BMP2B_XENLA Bone morphogenetic protein 2-II precursor (BMP-2-II)
Length = 398
Score = 104 bits (259), Expect = 2e-22
Identities = 44/104 (42%), Positives = 65/104 (62%)
Frame = +3
Query: 162 CTLYPMKVDFDRMGWNQWIIGPRSFNAGVCAGPCPYPLGQSYHPTNHAVVQSIWYHLNPN 341
C +P+ VDF +GWN WI+ P ++A C G CP+PL + TNHA+VQ++ +N
Sbjct: 298 CRRHPLYVDFSDVGWNDWIVAPPGYHAFYCHGECPFPLADHLNSTNHAIVQTL---VNSV 354
Query: 342 NNIIGPVCCVPHDLKQLRMLFYNNDRLVVLKTYDNMIVKSCGCK 473
N I CCVP +L + ML+ + + VVLK Y +M+V+ CGC+
Sbjct: 355 NTNIPKACCVPTELSAISMLYLDENEKVVLKNYQDMVVEGCGCR 398
>sp|P30885|BMP4_XENLA Bone morphogenetic protein 4 precursor (BMP-4)
Length = 401
Score = 103 bits (258), Expect = 3e-22
Identities = 45/106 (42%), Positives = 64/106 (60%)
Frame = +3
Query: 156 KHCTLYPMKVDFDRMGWNQWIIGPRSFNAGVCAGPCPYPLGQSYHPTNHAVVQSIWYHLN 335
KHC + + VDF +GWN WI+ P + A C G CP+PL + TNHA+VQ++ +N
Sbjct: 299 KHCRRHSLYVDFSDVGWNDWIVAPPGYQAFYCHGDCPFPLADHLNSTNHAIVQTL---VN 355
Query: 336 PNNNIIGPVCCVPHDLKQLRMLFYNNDRLVVLKTYDNMIVKSCGCK 473
N+ I CCVP +L + ML+ + VVLK Y M+V+ CGC+
Sbjct: 356 SVNSSIPKACCVPTELSAISMLYLDEYDKVVLKNYQEMVVEGCGCR 401
>sp|O46576|BMP4_RABIT Bone morphogenetic protein 4 precursor (BMP-4)
Length = 409
Score = 102 bits (255), Expect = 6e-22
Identities = 44/106 (41%), Positives = 65/106 (61%)
Frame = +3
Query: 156 KHCTLYPMKVDFDRMGWNQWIIGPRSFNAGVCAGPCPYPLGQSYHPTNHAVVQSIWYHLN 335
K+C + + VDF +GWN WI+ P + A C G CP+PL ++ TNHA+VQ++ +N
Sbjct: 307 KNCRRHALYVDFSDVGWNDWIVAPPGYQAFYCHGDCPFPLADHFNSTNHAIVQTL---VN 363
Query: 336 PNNNIIGPVCCVPHDLKQLRMLFYNNDRLVVLKTYDNMIVKSCGCK 473
N+ I CCVP +L + ML+ + VVLK Y M+V+ CGC+
Sbjct: 364 SVNSSIPKACCVPTELSAISMLYLDEYDKVVLKNYQEMVVEGCGCR 409
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,048,113
Number of Sequences: 369166
Number of extensions: 1502034
Number of successful extensions: 3715
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3514
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4797864890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)