Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_O24
(582 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q95168|ZO2_CANFA Tight junction protein ZO-2 (Zonula occ... 37 0.027
sp|Q61245|COBA1_MOUSE Collagen alpha 1(XI) chain precursor 32 0.88
sp|O80684|DNJ72_ARATH Chaperone protein dnaJ 72 (AtJ72) (At... 32 1.1
sp|Q19951|PEX13_CAEEL Probable peroxisomal membrane protein... 32 1.5
sp|Q8P9T9|XYLA1_XANCP Xylose isomerase 1 31 2.0
sp|Q5BKZ1|ZN326_HUMAN Zinc finger protein 326 31 2.0
sp|Q5RCA4|ZN326_PONPY Zinc finger protein 326 31 2.0
sp|P22465|ANX10_DROME Annexin X 31 2.6
sp|Q01560|NOP3_YEAST Nucleolar protein 3 (Mitochondrial tar... 31 2.6
sp|Q6GDH2|CLFB_STAAR Clumping factor B precursor (Fibrinoge... 31 2.6
>sp|Q95168|ZO2_CANFA Tight junction protein ZO-2 (Zonula occludens 2 protein) (Zona
occludens 2 protein) (Tight junction protein 2)
Length = 1174
Score = 37.4 bits (85), Expect = 0.027
Identities = 28/100 (28%), Positives = 42/100 (42%)
Frame = +1
Query: 157 DEDYGIRRTINTGFDSDYGMRSSAGYDNDYGMPRSSGLGMDSDYGMPRTVNPGFDSDYLM 336
D+DY R + G + G+ +D+DYG P GM +D G R + G+D Y
Sbjct: 181 DDDYRRpreRSRGRSLERGL----DHDDDYGRPGERSHGMSTDRGYDRGYDRGYDRGY-- 234
Query: 337 PRQNKPLFEPDFTNDIKPDIKRGFGGMPEDSLLDNRMPPP 456
R P E ++ +PD + L +R P P
Sbjct: 235 DRTYSP--EAEYGRRTQPDARHAGSRSRSREHLRSRSPSP 272
>sp|Q61245|COBA1_MOUSE Collagen alpha 1(XI) chain precursor
Length = 1804
Score = 32.3 bits (72), Expect = 0.88
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Frame = +1
Query: 22 VEREEANPVDP-------TRFIQENILPKNLTGSFLNQPDPEPPQRFEESYFDEDYGIRR 180
V + EAN VD T + P+ ++GS N+P+P EE EDY ++R
Sbjct: 293 VAQTEANIVDDFQDYNYGTMEPYQTETPRRVSGS--NEPNPVEEGFTEEYLTGEDYDVQR 350
Query: 181 TINTGFDSDYGMRSSAGYDND 243
NT D YG + G D+D
Sbjct: 351 --NTSEDILYGNKGVDGRDSD 369
>sp|O80684|DNJ72_ARATH Chaperone protein dnaJ 72 (AtJ72) (AtDjC72)
Length = 184
Score = 32.0 bits (71), Expect = 1.1
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Frame = +1
Query: 175 RRTINTGFDSDYGMRSSAGYDNDYGM--PRSSGLGMDSDYG------MPRTVNPGFDSDY 330
R + N G DSD R+S Y N YG R+ G G YG + + GFDS +
Sbjct: 66 RASYNAGSDSDCFRRTSGSYSNPYGNRGGRAQGSGYGYGYGYSTRNRQASSFSSGFDSTF 125
>sp|Q19951|PEX13_CAEEL Probable peroxisomal membrane protein PEX13 (Peroxin-13)
Length = 330
Score = 31.6 bits (70), Expect = 1.5
Identities = 22/62 (35%), Positives = 25/62 (40%)
Frame = +1
Query: 109 NQPDPEPPQRFEESYFDEDYGIRRTINTGFDSDYGMRSSAGYDNDYGMPRSSGLGMDSDY 288
NQP P PP+ F+ + INTGF GY YGM G GM
Sbjct: 7 NQPPPLPPRSFDNQMSNP------MINTGF----------GYGGGYGMNTFPGSGMYGGG 50
Query: 289 GM 294
GM
Sbjct: 51 GM 52
>sp|Q8P9T9|XYLA1_XANCP Xylose isomerase 1
Length = 446
Score = 31.2 bits (69), Expect = 2.0
Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Frame = +1
Query: 94 TGSFLNQPDPEPPQRFEESY-------FDEDYGIRRTINTGFDSDYGMRSSAGYDNDYGM 252
TG+FL +P P P + + + F +G+ + ++++ S +++D +
Sbjct: 234 TGNFLIEPKPMEPMKHQYDFDSATVIGFLHQHGLDQDFKLNIEANHATLSGHSFEHDLQV 293
Query: 253 PRSSGL--GMDSDYGMPRTVNPGFDSD 327
+GL +D++ G P+ G+D+D
Sbjct: 294 ASDAGLLGSIDANRGNPQN---GWDTD 317
>sp|Q5BKZ1|ZN326_HUMAN Zinc finger protein 326
Length = 582
Score = 31.2 bits (69), Expect = 2.0
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Frame = +1
Query: 154 FDEDYGIRRTINT-----GFDSDYGMRSSAGYDNDYGM-----PRSSGLGMDSDYGM 294
F++DY NT G D DYG S G D DYG RS ++ YGM
Sbjct: 3 FEDDYTHSACRNTYQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGM 59
>sp|Q5RCA4|ZN326_PONPY Zinc finger protein 326
Length = 579
Score = 31.2 bits (69), Expect = 2.0
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Frame = +1
Query: 154 FDEDYGIRRTINT-----GFDSDYGMRSSAGYDNDYGM-----PRSSGLGMDSDYGM 294
F++DY NT G D DYG S G D DYG RS ++ YGM
Sbjct: 3 FEDDYTHSACRNTYQGFNGMDRDYGPGSYGGMDRDYGHGSYGGQRSMDSYLNQSYGM 59
>sp|P22465|ANX10_DROME Annexin X
Length = 320
Score = 30.8 bits (68), Expect = 2.6
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Frame = +1
Query: 325 DYLMPRQN------KPLFEPDFTNDIKPDIKRGFGGMPEDSLLDNRMPP 453
D L+ R N K ++E +F D+ D+K GG ED ++ MPP
Sbjct: 40 DVLVGRSNQQRQTIKAVYEAEFERDLVDDLKDELGGKFEDVIVGLMMPP 88
>sp|Q01560|NOP3_YEAST Nucleolar protein 3 (Mitochondrial targeting suppressor 1 protein)
(Nuclear polyadenylated RNA-binding protein 1)
Length = 414
Score = 30.8 bits (68), Expect = 2.6
Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = +1
Query: 193 GFDSDYGMRSSAGYD---NDYGMPRSSGLGMDSDYGMPRTVNPGFDSDYLMPR 342
G+DS G S GY NDYG PR S G Y PR DY PR
Sbjct: 353 GYDSPRGGYSRGGYGGPRNDYGPPRGSYGGSRGGYDGPR-------GDYGPPR 398
>sp|Q6GDH2|CLFB_STAAR Clumping factor B precursor (Fibrinogen-binding protein B)
(Fibrinogen receptor B)
Length = 873
Score = 30.8 bits (68), Expect = 2.6
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +1
Query: 115 PDPEP-PQRFEESYFDEDYGIRRTINTGFDSDYGMRSSAGYDNDYGMPRSSGLGMDSDYG 291
PDPEP P+ +S D D G ++G DSD S + D+D S DSD
Sbjct: 576 PDPEPSPEPDPDSDSDSDSG--SDSDSGSDSDSDSDSDSDSDSDSNSDSESDSDSDSDSD 633
Query: 292 MPRTVNPGFDSD 327
+ DSD
Sbjct: 634 SDSDSDSDSDSD 645
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,990,733
Number of Sequences: 369166
Number of extensions: 1708738
Number of successful extensions: 5189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5145
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4308286840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)