Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_O19-1
(159 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51834|SMC_BACSU Chromosome partition protein smc 28 5.1
sp|P91349|SPD5_CAEEL Spindle-defective protein 5 28 8.6
>sp|P51834|SMC_BACSU Chromosome partition protein smc
Length = 1186
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 3 EGEQKVQIMGEELDRLKQYLTSTEKELNDLRKT 101
E E+K ++ +E+ LK + EK+L DLR+T
Sbjct: 688 EMEEKTALLEQEVKTLKHSIQDMEKKLADLRET 720
>sp|P91349|SPD5_CAEEL Spindle-defective protein 5
Length = 1198
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +3
Query: 3 EGEQKVQIMGEE-LDRLKQYLTSTEKELNDLRKTL 104
+GEQ+ ++ E L+ +Q ++S + E N+L+KT+
Sbjct: 799 DGEQETRVKAENALEEARQLISSLKHEENELKKTI 833
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,166,337
Number of Sequences: 369166
Number of extensions: 147680
Number of successful extensions: 755
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 68,354,980
effective HSP length: 25
effective length of database: 63,736,605
effective search space used: 1720888335
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)