Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_O15-2
(483 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8N806|CN130_HUMAN Protein C14orf130 52 7e-07
sp|Q8BU04|CN130_MOUSE Protein C14orf130 homolog 50 2e-06
sp|Q09329|MLO2_SCHPO Protein mlo2 36 0.053
sp|Q8NDV3|SM1L2_HUMAN Structural maintenance of chromosome ... 32 1.00
sp|Q9NP84|FN14_HUMAN Tumor necrosis factor receptor superfa... 31 1.7
sp|Q9CR75|FN14_MOUSE Tumor necrosis factor receptor superfa... 31 1.7
sp|P26330|VSI5_TRYBB Variant surface glycoprotein ILTAT 1.2... 29 5.0
sp|Q9ZCA5|Y855_RICPR Hypothetical protein RP855 29 6.5
sp|Q9KA74|NUSA_BACHD Transcription elongation protein nusA 29 6.5
sp|P58799|HIS6_AGRT5 Imidazole glycerol phosphate synthase ... 28 8.5
>sp|Q8N806|CN130_HUMAN Protein C14orf130
Length = 425
Score = 52.0 bits (123), Expect = 7e-07
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Frame = +2
Query: 35 SFWSADWREKLCRCASCSARMASDECGFLLDKNDSIAQYCAEGGRAE----EDLLVGELC 202
++W +WR KLC C C + FL D+ D++ Y +G A+ D L+ L
Sbjct: 303 TYWPLNWRSKLCTCQDCMKMYGDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPLMDTLS 362
Query: 203 NLPYSQAIVVAEGIASLQQHIAEFFSSIDRDKSVITAEDVHSFFDKIKRRRLERFD 370
++ Q + + L+ + ++ + +V+ ED+ FF++ + ++ R D
Sbjct: 363 SMNRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVD 418
>sp|Q8BU04|CN130_MOUSE Protein C14orf130 homolog
Length = 425
Score = 50.4 bits (119), Expect = 2e-06
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Frame = +2
Query: 35 SFWSADWREKLCRCASCSARMASDECGFLLDKNDSIAQYCAEGGRAE----EDLLVGELC 202
++W +WR KLC C C + FL D+ D++ Y +G + D L+ L
Sbjct: 303 TYWPLNWRSKLCTCQDCMKMYGELDVLFLTDECDTVLAYENKGKNDQATDRRDPLMDTLS 362
Query: 203 NLPYSQAIVVAEGIASLQQHIAEFFSSIDRDKSVITAEDVHSFFDKIKRRRLERFD 370
++ Q + + L+ + ++ + +V+ ED+ FF++ + ++ R D
Sbjct: 363 SMNRVQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVD 418
>sp|Q09329|MLO2_SCHPO Protein mlo2
Length = 329
Score = 35.8 bits (81), Expect = 0.053
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 20/129 (15%)
Frame = +2
Query: 38 FWSADWREKLCRCASCSARMASDECGFLL----------DKNDSIAQYC---AEGGRAEE 178
F S ++RE LC C SC + + + E L+ D D I++ +E G E
Sbjct: 201 FLSENFRENLCPCESCIS-LRNLEMPMLVAEEPIYEPPEDSEDGISEMNEDPSESGEMIE 259
Query: 179 DLLVGE-------LCNLPYSQAIVVAEGIASLQQHIAEFFSSIDRDKSVITAEDVHSFFD 337
++ L LP QA L+ + +F + R+ V+T ED+ +FF
Sbjct: 260 QVISSTMNDVLRILDRLPRVQANESVYAYNRLKSELTDFLTPFARENRVVTKEDISNFF- 318
Query: 338 KIKRRRLER 364
++R R+ +
Sbjct: 319 -LERSRISK 326
>sp|Q8NDV3|SM1L2_HUMAN Structural maintenance of chromosome 1-like 2 protein (SMC1beta
protein)
Length = 1235
Score = 31.6 bits (70), Expect = 1.00
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Frame = +2
Query: 173 EEDLLVGELCNLPYSQAIVVAEGIASLQQHIAEFFSSIDRDK--------SVITAEDVHS 328
E+ L EL N+ SQ I+++EGI Q+ I EF ID+ + I E++
Sbjct: 733 EQSQLQSELLNIE-SQCIMLSEGIKERQRRIKEFQEKIDKVEDDIFQHFCEEIGVENIRE 791
Query: 329 FFDKIKRRRLE 361
F +K +R+ E
Sbjct: 792 FENKHVKRQQE 802
>sp|Q9NP84|FN14_HUMAN Tumor necrosis factor receptor superfamily member Fn14 precursor
(Fibroblast growth factor-inducible immediate-early
response protein 14) (FGF-inducible 14) (Tweak-receptor)
(TweakR) (CD266 antigen)
Length = 129
Score = 30.8 bits (68), Expect = 1.7
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +2
Query: 32 GSFWSADWREKLCRCASCSARMASDEC 112
GS WSAD +K CASC AR SD C
Sbjct: 39 GSSWSADL-DKCMDCASCRARPHSDFC 64
>sp|Q9CR75|FN14_MOUSE Tumor necrosis factor receptor superfamily member Fn14 precursor
(Fibroblast growth factor-inducible immediate-early
response protein 14) (FGF-inducible 14) (Fibroblast
growth factor regulated protein 2) (Tweak-receptor)
(TweakR)
Length = 129
Score = 30.8 bits (68), Expect = 1.7
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +2
Query: 32 GSFWSADWREKLCRCASCSARMASDEC 112
GS WSAD +K CASC AR SD C
Sbjct: 39 GSSWSADL-DKCMDCASCPARPHSDFC 64
>sp|P26330|VSI5_TRYBB Variant surface glycoprotein ILTAT 1.25 precursor (VSG)
Length = 507
Score = 29.3 bits (64), Expect = 5.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 105 TNAASCSTRTTASLNIAPRGGALRRICWLESSVICR 212
T +C T+TTA +N A +GG + R W E C+
Sbjct: 228 TGNDACFTQTTADINYAKKGGEVER-AWTEIRQKCK 262
>sp|Q9ZCA5|Y855_RICPR Hypothetical protein RP855
Length = 520
Score = 28.9 bits (63), Expect = 6.5
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -2
Query: 461 IDYKYNTT*TDLSAV-ENEIN*LFCLFENLISRISRVVCV 345
+DY ++ T + + E EI+ F LF+N IS + + VC+
Sbjct: 224 LDYPFDKTTNYVQGIIEQEIHDFFILFKNYISNLDQRVCI 263
>sp|Q9KA74|NUSA_BACHD Transcription elongation protein nusA
Length = 382
Score = 28.9 bits (63), Expect = 6.5
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Frame = -3
Query: 343 DFIEEAVDILGG-----DDRFVSIDAAE-ELRDVLLER--GDSFRHNDRL 218
DFI+ DI+ G D+RF+ +D + E L E+ +S+RHNDR+
Sbjct: 129 DFIDREEDIMTGIVQRQDNRFIYVDLGKVEALLPLSEQMPNESYRHNDRI 178
>sp|P58799|HIS6_AGRT5 Imidazole glycerol phosphate synthase subunit hisF (IGP synthase
cyclase subunit) (IGP synthase subunit hisF) (ImGP
synthase subunit hisF) (IGPS subunit hisF)
Length = 258
Score = 28.5 bits (62), Expect = 8.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 343 DFIEEAVDILGGDDRFVSIDAAEELRDVLLERGDSFRHNDR 221
DF+ +A D G VSIDA +D +R + F H R
Sbjct: 112 DFVAQAADKFGNQCIVVSIDAKRVSKDGEADRWEIFTHGGR 152
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,520,519
Number of Sequences: 369166
Number of extensions: 893470
Number of successful extensions: 3078
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3074
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2871696580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)