Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_O04
(440 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q16576|RBBP7_HUMAN Histone acetyltransferase type B subu... 162 4e-40
sp|Q24572|CAF1_DROME Chromatin assembly factor 1 P55 subuni... 160 1e-39
sp|Q60973|RBBP7_MOUSE Histone acetyltransferase type B subu... 160 1e-39
sp|Q09028|RBBP4_HUMAN Chromatin assembly factor 1 subunit C... 157 1e-38
sp|Q60972|RBBP4_MOUSE Chromatin assembly factor 1 subunit C... 157 1e-38
sp|P90916|LIN53_CAEEL Trp-Asp repeats containing protein li... 154 8e-38
sp|O22467|MSI1_ARATH WD-40 repeat protein MSI1 132 3e-31
sp|O22466|MSI1_LYCES WD-40 repeat protein MSI1 132 3e-31
sp|O22468|MSI2_ARATH WD-40 repeat protein MSI2 122 3e-28
sp|O22469|MSI3_ARATH WD-40 repeat protein MSI3 117 8e-27
>sp|Q16576|RBBP7_HUMAN Histone acetyltransferase type B subunit 2 (Retinoblastoma binding
protein P46) (Retinoblastoma-binding protein 7) (RBBP-7)
Length = 425
Score = 162 bits (409), Expect = 4e-40
Identities = 72/85 (84%), Positives = 80/85 (94%)
Frame = +3
Query: 24 GTDRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSED 203
GTDRRL+VWDLS+IGEEQSAEDAEDGPPELLFIHGGHTAKISDFSW+PN PW+ICSVSED
Sbjct: 336 GTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 395
Query: 204 NILQVWQMAENIYNDEDLDSATKEV 278
NI+Q+WQMAENIYNDE+ D T E+
Sbjct: 396 NIMQIWQMAENIYNDEESDVTTSEL 420
Score = 32.7 bits (73), Expect = 0.36
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 30 DRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSEDNI 209
D + +WD++ +E DA+ I GH+A + D +W L SV++D
Sbjct: 198 DHTVCLWDINAGPKEGKIVDAKA-------IFTGHSAVVEDVAWHLLHESLFGSVADDQK 250
Query: 210 LQVWQMAENIYNDED--LDSATKEV 278
L +W N + +D+ T EV
Sbjct: 251 LMIWDTRSNTTSKPSHLVDAHTAEV 275
Score = 28.9 bits (63), Expect = 5.2
Identities = 16/71 (22%), Positives = 28/71 (39%)
Frame = +3
Query: 21 GGTDRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSE 200
G D+ + +WDL + + L H +I WSP+ ++ S
Sbjct: 291 GSADKTVALWDLRNLKLK-------------LHTFESHKDEIFQVHWSPHNETILASSGT 337
Query: 201 DNILQVWQMAE 233
D L VW +++
Sbjct: 338 DRRLNVWDLSK 348
Score = 28.5 bits (62), Expect = 6.8
Identities = 17/85 (20%), Positives = 38/85 (44%)
Frame = +3
Query: 30 DRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSEDNI 209
D++L +WD + + P L+ HTA+++ S++P + +++ + S D
Sbjct: 248 DQKLMIWD--------TRSNTTSKPSHLV---DAHTAEVNCLSFNPYSEFILATGSADKT 296
Query: 210 LQVWQMAENIYNDEDLDSATKEVVQ 284
+ +W + +S E+ Q
Sbjct: 297 VALWDLRNLKLKLHTFESHKDEIFQ 321
>sp|Q24572|CAF1_DROME Chromatin assembly factor 1 P55 subunit (CAF-1 P55 subunit)
(dCAF-1) (Nucleosome remodeling factor 55 kDa subunit)
(NURF-55)
Length = 430
Score = 160 bits (405), Expect = 1e-39
Identities = 71/88 (80%), Positives = 79/88 (89%)
Frame = +3
Query: 24 GTDRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSED 203
GTDRRLHVWDLS+IGEEQS EDAEDGPPELLFIHGGHTAKISDFSW+PN PW+ICSVSED
Sbjct: 341 GTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED 400
Query: 204 NILQVWQMAENIYNDEDLDSATKEVVQN 287
NI+QVWQMAEN+YNDE+ + E+ N
Sbjct: 401 NIMQVWQMAENVYNDEEPEIPASELETN 428
Score = 37.0 bits (84), Expect = 0.019
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +3
Query: 30 DRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSEDNI 209
D + +WD++ +E DA++ I GHTA + D +W L SV++D
Sbjct: 203 DHTICLWDINATPKEHRVIDAKN-------IFTGHTAVVEDVAWHLLHESLFGSVADDQK 255
Query: 210 LQVWQMAENIYN--DEDLDSATKEV 278
L +W N + +D+ T EV
Sbjct: 256 LMIWDTRNNNTSKPSHTVDAHTAEV 280
Score = 28.9 bits (63), Expect = 5.2
Identities = 15/71 (21%), Positives = 30/71 (42%)
Frame = +3
Query: 21 GGTDRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSE 200
G D+ + +WDL + + + ++ H +I WSP+ ++ S
Sbjct: 296 GSADKTVALWDLRNLKLKLHSFES-------------HKDEIFQVQWSPHNETILASSGT 342
Query: 201 DNILQVWQMAE 233
D L VW +++
Sbjct: 343 DRRLHVWDLSK 353
Score = 28.5 bits (62), Expect = 6.8
Identities = 15/85 (17%), Positives = 36/85 (42%)
Frame = +3
Query: 30 DRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSEDNI 209
D++L +WD + + + HTA+++ S++P + +++ + S D
Sbjct: 253 DQKLMIWDTRNNNTSKPSHTVD-----------AHTAEVNCLSFNPYSEFILATGSADKT 301
Query: 210 LQVWQMAENIYNDEDLDSATKEVVQ 284
+ +W + +S E+ Q
Sbjct: 302 VALWDLRNLKLKLHSFESHKDEIFQ 326
>sp|Q60973|RBBP7_MOUSE Histone acetyltransferase type B subunit 2 (Retinoblastoma binding
protein p46) (Retinoblastoma-binding protein 7) (RBBP-7)
Length = 425
Score = 160 bits (404), Expect = 1e-39
Identities = 71/85 (83%), Positives = 79/85 (92%)
Frame = +3
Query: 24 GTDRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSED 203
GTDRRL+VWDLS+IGEEQSAEDAEDGPPELLFIHGGHTAKISDFSW+PN PW+ICSVSED
Sbjct: 336 GTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 395
Query: 204 NILQVWQMAENIYNDEDLDSATKEV 278
NI+Q+WQMAENIYNDE+ D E+
Sbjct: 396 NIMQIWQMAENIYNDEESDVTASEL 420
Score = 32.7 bits (73), Expect = 0.36
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 30 DRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSEDNI 209
D + +WD++ +E DA+ I GH+A + D +W L SV++D
Sbjct: 198 DHTVCLWDINAGPKEGKIVDAKA-------IFTGHSAVVEDVAWHLLHESLFGSVADDQK 250
Query: 210 LQVWQMAENIYNDED--LDSATKEV 278
L +W N + +D+ T EV
Sbjct: 251 LMIWDTRSNTTSKPSHLVDAHTAEV 275
Score = 28.9 bits (63), Expect = 5.2
Identities = 16/71 (22%), Positives = 28/71 (39%)
Frame = +3
Query: 21 GGTDRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSE 200
G D+ + +WDL + + L H +I WSP+ ++ S
Sbjct: 291 GSADKTVALWDLRNLKLK-------------LHTFESHKDEIFQVHWSPHNETILASSGT 337
Query: 201 DNILQVWQMAE 233
D L VW +++
Sbjct: 338 DRRLNVWDLSK 348
Score = 28.5 bits (62), Expect = 6.8
Identities = 17/85 (20%), Positives = 38/85 (44%)
Frame = +3
Query: 30 DRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSEDNI 209
D++L +WD + + P L+ HTA+++ S++P + +++ + S D
Sbjct: 248 DQKLMIWD--------TRSNTTSKPSHLV---DAHTAEVNCLSFNPYSEFILATGSADKT 296
Query: 210 LQVWQMAENIYNDEDLDSATKEVVQ 284
+ +W + +S E+ Q
Sbjct: 297 VALWDLRNLKLKLHTFESHKDEIFQ 321
>sp|Q09028|RBBP4_HUMAN Chromatin assembly factor 1 subunit C (CAF-1 subunit C) (Chromatin
assembly factor I p48 subunit) (CAF-I 48 kDa subunit)
(CAF-Ip48) (Retinoblastoma binding protein p48)
(Retinoblastoma-binding protein 4) (RBBP-4) (MSI1
protein homolog)
Length = 425
Score = 157 bits (396), Expect = 1e-38
Identities = 70/77 (90%), Positives = 75/77 (97%)
Frame = +3
Query: 24 GTDRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSED 203
GTDRRL+VWDLS+IGEEQS EDAEDGPPELLFIHGGHTAKISDFSW+PN PW+ICSVSED
Sbjct: 337 GTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 396
Query: 204 NILQVWQMAENIYNDED 254
NI+QVWQMAENIYNDED
Sbjct: 397 NIMQVWQMAENIYNDED 413
Score = 40.4 bits (93), Expect = 0.002
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +3
Query: 30 DRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSEDNI 209
D + +WD+S + +E DA+ I GHTA + D SW L SV++D
Sbjct: 199 DHTICLWDISAVPKEGKVVDAKT-------IFTGHTAVVEDVSWHLLHESLFGSVADDQK 251
Query: 210 LQVWQMAENIYN--DEDLDSATKEV 278
L +W N + +D+ T EV
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEV 276
Score = 28.9 bits (63), Expect = 5.2
Identities = 15/71 (21%), Positives = 30/71 (42%)
Frame = +3
Query: 21 GGTDRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSE 200
G D+ + +WDL + + + ++ H +I WSP+ ++ S
Sbjct: 292 GSADKTVALWDLRNLKLKLHSFES-------------HKDEIFQVQWSPHNETILASSGT 338
Query: 201 DNILQVWQMAE 233
D L VW +++
Sbjct: 339 DRRLNVWDLSK 349
Score = 28.5 bits (62), Expect = 6.8
Identities = 15/85 (17%), Positives = 36/85 (42%)
Frame = +3
Query: 30 DRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSEDNI 209
D++L +WD + + + HTA+++ S++P + +++ + S D
Sbjct: 249 DQKLMIWDTRSNNTSKPSHSVD-----------AHTAEVNCLSFNPYSEFILATGSADKT 297
Query: 210 LQVWQMAENIYNDEDLDSATKEVVQ 284
+ +W + +S E+ Q
Sbjct: 298 VALWDLRNLKLKLHSFESHKDEIFQ 322
>sp|Q60972|RBBP4_MOUSE Chromatin assembly factor 1 subunit C (CAF-1 subunit C) (Chromatin
assembly factor I p48 subunit) (CAF-I 48 kDa subunit)
(CAF-Ip48) (Retinoblastoma binding protein p48)
(Retinoblastoma-binding protein 4) (RBBP-4)
Length = 461
Score = 157 bits (396), Expect = 1e-38
Identities = 70/77 (90%), Positives = 75/77 (97%)
Frame = +3
Query: 24 GTDRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSED 203
GTDRRL+VWDLS+IGEEQS EDAEDGPPELLFIHGGHTAKISDFSW+PN PW+ICSVSED
Sbjct: 337 GTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 396
Query: 204 NILQVWQMAENIYNDED 254
NI+QVWQMAENIYNDED
Sbjct: 397 NIMQVWQMAENIYNDED 413
Score = 38.9 bits (89), Expect = 0.005
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +3
Query: 30 DRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSEDNI 209
D + +WD+S + ++ DA+ I GHTA + D SW L SV++D
Sbjct: 199 DHTICLWDISAVPKKGKVVDAKT-------IFTGHTAVVEDVSWHLLHESLFGSVADDQK 251
Query: 210 LQVWQMAENIYN--DEDLDSATKEV 278
L +W N + +D+ T EV
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEV 276
Score = 28.9 bits (63), Expect = 5.2
Identities = 15/71 (21%), Positives = 30/71 (42%)
Frame = +3
Query: 21 GGTDRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSE 200
G D+ + +WDL + + + ++ H +I WSP+ ++ S
Sbjct: 292 GSADKTVALWDLRNLKLKLHSFES-------------HKDEIFQVQWSPHNETILASSGT 338
Query: 201 DNILQVWQMAE 233
D L VW +++
Sbjct: 339 DRRLNVWDLSK 349
Score = 28.5 bits (62), Expect = 6.8
Identities = 15/85 (17%), Positives = 36/85 (42%)
Frame = +3
Query: 30 DRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSEDNI 209
D++L +WD + + + HTA+++ S++P + +++ + S D
Sbjct: 249 DQKLMIWDTRSNNTSKPSHSVD-----------AHTAEVNCLSFNPYSEFILATGSADKT 297
Query: 210 LQVWQMAENIYNDEDLDSATKEVVQ 284
+ +W + +S E+ Q
Sbjct: 298 VALWDLRNLKLKLHSFESHKDEIFQ 322
>sp|P90916|LIN53_CAEEL Trp-Asp repeats containing protein lin-53 (Abnormal cell lineage
protein 53)
Length = 385
Score = 154 bits (389), Expect = 8e-38
Identities = 67/77 (87%), Positives = 75/77 (97%)
Frame = +3
Query: 24 GTDRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSED 203
GTD+RLHVWDLS+IGE+QSAEDAEDGPPELLFIHGGHTAKISDFSW+PN PW++CSVSED
Sbjct: 297 GTDKRLHVWDLSKIGEDQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVVCSVSED 356
Query: 204 NILQVWQMAENIYNDED 254
NILQVWQMA+NIYN+ D
Sbjct: 357 NILQVWQMADNIYNEVD 373
Score = 31.2 bits (69), Expect = 1.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 129 GHTAKISDFSWSPNTPWLICSVSEDNILQVWQMAEN 236
GHT + SW+PN LI S S+D + W + N
Sbjct: 138 GHTKEGYGLSWNPNKEGLILSASDDQTVCHWDINAN 173
Score = 30.0 bits (66), Expect = 2.3
Identities = 18/82 (21%), Positives = 35/82 (42%)
Frame = +3
Query: 21 GGTDRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSE 200
G D+ + +WDL + + + ++ H +I WSP+ ++ S
Sbjct: 252 GSADKTVALWDLRNLRMKLHSFES-------------HRDEIFQVQWSPHNETILASSGT 298
Query: 201 DNILQVWQMAENIYNDEDLDSA 266
D L VW +++ I D+ + A
Sbjct: 299 DKRLHVWDLSK-IGEDQSAEDA 319
>sp|O22467|MSI1_ARATH WD-40 repeat protein MSI1
Length = 424
Score = 132 bits (333), Expect = 3e-31
Identities = 60/74 (81%), Positives = 67/74 (90%)
Frame = +3
Query: 33 RRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSEDNIL 212
RRL VWDLSRI EEQ+ EDAEDGPPELLFIHGGHT+KISDFSW+P W+I SV+EDNIL
Sbjct: 340 RRLMVWDLSRIDEEQTVEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNIL 399
Query: 213 QVWQMAENIYNDED 254
Q+WQMAENIY+DED
Sbjct: 400 QIWQMAENIYHDED 413
>sp|O22466|MSI1_LYCES WD-40 repeat protein MSI1
Length = 424
Score = 132 bits (332), Expect = 3e-31
Identities = 59/74 (79%), Positives = 67/74 (90%)
Frame = +3
Query: 33 RRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSEDNIL 212
RRL VWDLSRI EEQ+ EDAEDGPPELLFIHGGHT+KISDFSW+P W++ SV+EDNIL
Sbjct: 340 RRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNIL 399
Query: 213 QVWQMAENIYNDED 254
Q+WQMAENIY+DED
Sbjct: 400 QIWQMAENIYHDED 413
Score = 30.0 bits (66), Expect = 2.3
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Frame = +3
Query: 9 IRHEG-----GTDRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNT 173
+RHE G D+ LHVWDL + + H ++++ +++P
Sbjct: 237 LRHEYLFGSVGDDQYLHVWDLRTPSVTKPIQSVV-----------AHQSEVNCLAFNPFN 285
Query: 174 PWLICSVSEDNILQVWQMAENIYNDEDLDSATKEVVQ 284
W++ + S D ++++ + + LD +EV Q
Sbjct: 286 EWVVATGSTDKTVKLFDLRKISTALHTLDCHKEEVFQ 322
>sp|O22468|MSI2_ARATH WD-40 repeat protein MSI2
Length = 415
Score = 122 bits (307), Expect = 3e-28
Identities = 59/90 (65%), Positives = 70/90 (77%), Gaps = 3/90 (3%)
Frame = +3
Query: 24 GTDRRLHVWDLSRIGEEQSAE--DAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVS 197
G DRRL VWDL+R+GEEQ DAEDGPPELLF HGGH AKISDF+W+ N PW+I SV+
Sbjct: 324 GEDRRLMVWDLNRVGEEQLEIELDAEDGPPELLFSHGGHKAKISDFAWNKNEPWVIASVA 383
Query: 198 EDNILQVWQMAENIYND-EDLDSATKEVVQ 284
EDN LQVWQMAE+IY D ED + +++ Q
Sbjct: 384 EDNSLQVWQMAESIYRDEEDAEDIKEDITQ 413
Score = 38.1 bits (87), Expect = 0.009
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +3
Query: 21 GGTDRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSE 200
G D+++ +WD+S +++ +F++ GH + I+D SW L S E
Sbjct: 187 GSQDQKICLWDVSATPQDKVLN--------AMFVYEGHESAIADVSWHMKNENLFGSAGE 238
Query: 201 DNILQVWQMAEN 236
D L +W N
Sbjct: 239 DGRLVIWDTRTN 250
Score = 30.4 bits (67), Expect = 1.8
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3
Query: 114 LFIHGGHTAKISDFSWSPNTPWLICSVSEDNILQVWQMAENIYNDEDLD 260
L + H ++ W PN ++ S ED L VW + N +E L+
Sbjct: 297 LHVMSSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDL--NRVGEEQLE 343
>sp|O22469|MSI3_ARATH WD-40 repeat protein MSI3
Length = 424
Score = 117 bits (294), Expect = 8e-27
Identities = 54/81 (66%), Positives = 66/81 (81%), Gaps = 2/81 (2%)
Frame = +3
Query: 24 GTDRRLHVWDLSRIGEEQSAE--DAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVS 197
G DRRL VWD++R+G+EQ DAEDGPPELLF HGGH AKISDF+W+ + PW+I SV+
Sbjct: 325 GEDRRLMVWDINRVGDEQLEIELDAEDGPPELLFSHGGHKAKISDFAWNKDEPWVISSVA 384
Query: 198 EDNILQVWQMAENIYNDEDLD 260
EDN LQVWQMAE+IY ++D D
Sbjct: 385 EDNSLQVWQMAESIYREDDED 405
Score = 32.7 bits (73), Expect = 0.36
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +3
Query: 21 GGTDRRLHVWDLSRIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWSPNTPWLICSVSE 200
G D+R+ +WD+S +A D P + ++ GH + I D +W + S +
Sbjct: 188 GSQDQRICLWDVSA-----TATDKVLNP---MHVYEGHQSIIEDVAWHMKNENIFGSAGD 239
Query: 201 DNILQVWQMAEN 236
D L +W + N
Sbjct: 240 DCQLVIWDLRTN 251
Score = 30.4 bits (67), Expect = 1.8
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 114 LFIHGGHTAKISDFSWSPNTPWLICSVSEDNILQVWQMAENIYNDEDLD 260
L + H ++ W PN ++ S ED L VW + N DE L+
Sbjct: 298 LHVLSKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDI--NRVGDEQLE 344
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,855,822
Number of Sequences: 369166
Number of extensions: 1136393
Number of successful extensions: 3241
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3225
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2294548080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)