Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_N20
(746 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 54 6e-07
sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock doma... 50 6e-06
sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock doma... 50 6e-06
sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain... 50 6e-06
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 49 1e-05
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 48 2e-05
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 48 2e-05
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 48 2e-05
sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmi... 47 4e-05
sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-sp... 47 4e-05
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 53.5 bits (127), Expect = 6e-07
Identities = 26/45 (57%), Positives = 36/45 (80%), Gaps = 3/45 (6%)
Frame = +3
Query: 6 HPRK---SVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYA 131
+PRK SVG+GE++ FD+V+G KGNEAANV+ +G V+GS+YA
Sbjct: 69 NPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNVQGSKYA 113
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
3)
sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
Length = 361
Score = 50.1 bits (118), Expect = 6e-06
Identities = 26/45 (57%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Frame = +3
Query: 6 HPRK---SVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYA 131
+PRK SVG+GE + FD+V+G KG EAANV+ DG V+GS YA
Sbjct: 119 NPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYA 163
>sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock domain protein A) (Single-strand
DNA binding protein NF-GMB)
Length = 372
Score = 50.1 bits (118), Expect = 6e-06
Identities = 26/45 (57%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Frame = +3
Query: 6 HPRK---SVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYA 131
+PRK SVG+GE + FD+V+G KG EAANV+ DG V+GS YA
Sbjct: 127 NPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYA 171
>sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain protein A) (Muscle Y-box
protein YB2) (Y-box binding protein-A) (RYB-A)
Length = 361
Score = 50.1 bits (118), Expect = 6e-06
Identities = 26/45 (57%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Frame = +3
Query: 6 HPRK---SVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYA 131
+PRK SVG+GE + FD+V+G KG EAANV+ DG V+GS YA
Sbjct: 119 NPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYA 163
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 49.3 bits (116), Expect = 1e-05
Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 9/55 (16%)
Frame = +3
Query: 6 HPRK---SVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYAL------RYP 143
+PRK SVG+GE + FD+V+G KG EAANV+ +G V+GS+YA RYP
Sbjct: 73 NPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPEGVPVQGSKYAADRNHYRRYP 127
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 48.1 bits (113), Expect = 2e-05
Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 9/55 (16%)
Frame = +3
Query: 6 HPRK---SVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYAL------RYP 143
+PRK SVG+GE + FD+V+G KG EAANV+ G V+GS+YA RYP
Sbjct: 93 NPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYP 147
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 48.1 bits (113), Expect = 2e-05
Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 9/55 (16%)
Frame = +3
Query: 6 HPRK---SVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYAL------RYP 143
+PRK SVG+GE + FD+V+G KG EAANV+ G V+GS+YA RYP
Sbjct: 95 NPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYP 149
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 48.1 bits (113), Expect = 2e-05
Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 9/55 (16%)
Frame = +3
Query: 6 HPRK---SVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYAL------RYP 143
+PRK SVG+GE + FD+V+G KG EAANV+ G V+GS+YA RYP
Sbjct: 92 NPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYP 146
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
(mRNP3)
Length = 324
Score = 47.4 bits (111), Expect = 4e-05
Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Frame = +3
Query: 6 HPRK---SVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYA 131
+PRK SVG+GE + FD+V+G KG EAANV+ G VKGS +A
Sbjct: 78 NPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRFA 122
>sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-specific Y-box binding protein)
(Contrin) (MSY2 homolog)
Length = 364
Score = 47.4 bits (111), Expect = 4e-05
Identities = 25/45 (55%), Positives = 31/45 (68%), Gaps = 3/45 (6%)
Frame = +3
Query: 6 HPRK---SVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYA 131
+PRK SVG+GE + FD+V+G KG EA NV+ G VKGS YA
Sbjct: 130 NPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYA 174
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,106,733
Number of Sequences: 369166
Number of extensions: 1134276
Number of successful extensions: 2706
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2706
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6776504000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)