Planarian EST Database


Dr_sW_011_N20

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_011_N20
         (746 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41824|YBOXH_APLCA  Y-box factor homolog (APY1)                 54   6e-07
sp|Q9JKB3|DBPA_MOUSE  DNA-binding protein A (Cold shock doma...    50   6e-06
sp|P16989|DBPA_HUMAN  DNA-binding protein A (Cold shock doma...    50   6e-06
sp|Q62764|DBPA_RAT  DNA-binding protein A (Cold shock domain...    50   6e-06
sp|P21573|YBOX1_XENLA  Nuclease sensitive element binding pr...    49   1e-05
sp|P62960|YBOX1_MOUSE  Nuclease sensitive element binding pr...    48   2e-05
sp|P67809|YBOX1_HUMAN  Nuclease sensitive element binding pr...    48   2e-05
sp|Q06066|YBOX1_CHICK  Nuclease sensitive element binding pr...    48   2e-05
sp|P45441|YBX2B_XENLA  Y-box binding protein 2-B (Cytoplasmi...    47   4e-05
sp|Q9Y2T7|YBOX2_HUMAN  Y-box binding protein 2 (Germ cell-sp...    47   4e-05
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
          Length = 253

 Score = 53.5 bits (127), Expect = 6e-07
 Identities = 26/45 (57%), Positives = 36/45 (80%), Gaps = 3/45 (6%)
 Frame = +3

Query: 6   HPRK---SVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYA 131
           +PRK   SVG+GE++ FD+V+G KGNEAANV+  +G  V+GS+YA
Sbjct: 69  NPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNVQGSKYA 113
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
           3)
 sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
          Length = 361

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 26/45 (57%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
 Frame = +3

Query: 6   HPRK---SVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYA 131
           +PRK   SVG+GE + FD+V+G KG EAANV+  DG  V+GS YA
Sbjct: 119 NPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYA 163
>sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock domain protein A) (Single-strand
           DNA binding protein NF-GMB)
          Length = 372

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 26/45 (57%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
 Frame = +3

Query: 6   HPRK---SVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYA 131
           +PRK   SVG+GE + FD+V+G KG EAANV+  DG  V+GS YA
Sbjct: 127 NPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYA 171
>sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain protein A) (Muscle Y-box
           protein YB2) (Y-box binding protein-A) (RYB-A)
          Length = 361

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 26/45 (57%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
 Frame = +3

Query: 6   HPRK---SVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYA 131
           +PRK   SVG+GE + FD+V+G KG EAANV+  DG  V+GS YA
Sbjct: 119 NPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYA 163
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor)
          Length = 303

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 9/55 (16%)
 Frame = +3

Query: 6   HPRK---SVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYAL------RYP 143
           +PRK   SVG+GE + FD+V+G KG EAANV+  +G  V+GS+YA       RYP
Sbjct: 73  NPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPEGVPVQGSKYAADRNHYRRYP 127
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
 sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
          Length = 322

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 9/55 (16%)
 Frame = +3

Query: 6   HPRK---SVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYAL------RYP 143
           +PRK   SVG+GE + FD+V+G KG EAANV+   G  V+GS+YA       RYP
Sbjct: 93  NPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYP 147
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
 sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
          Length = 324

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 9/55 (16%)
 Frame = +3

Query: 6   HPRK---SVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYAL------RYP 143
           +PRK   SVG+GE + FD+V+G KG EAANV+   G  V+GS+YA       RYP
Sbjct: 95  NPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYP 149
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor)
          Length = 321

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 9/55 (16%)
 Frame = +3

Query: 6   HPRK---SVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYAL------RYP 143
           +PRK   SVG+GE + FD+V+G KG EAANV+   G  V+GS+YA       RYP
Sbjct: 92  NPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYP 146
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
           (mRNP3)
          Length = 324

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 25/45 (55%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
 Frame = +3

Query: 6   HPRK---SVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYA 131
           +PRK   SVG+GE + FD+V+G KG EAANV+   G  VKGS +A
Sbjct: 78  NPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRFA 122
>sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-specific Y-box binding protein)
           (Contrin) (MSY2 homolog)
          Length = 364

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 25/45 (55%), Positives = 31/45 (68%), Gaps = 3/45 (6%)
 Frame = +3

Query: 6   HPRK---SVGEGEEILFDIVKGAKGNEAANVSAIDGKCVKGSEYA 131
           +PRK   SVG+GE + FD+V+G KG EA NV+   G  VKGS YA
Sbjct: 130 NPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYA 174
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,106,733
Number of Sequences: 369166
Number of extensions: 1134276
Number of successful extensions: 2706
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2706
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6776504000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)