Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_N15
(356 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q86VS8|HOOK3_HUMAN Hook homolog 3 (hHK3) 35 0.040
sp|Q96ED9|HOOK2_HUMAN Hook homolog 2 (h-hook2) (hHK2) 33 0.15
sp|Q8BUK6|HOOK3_MOUSE Hook homolog 3 33 0.20
sp|Q8BIL5|HOOK1_MOUSE Hook homolog 1 32 0.45
sp|Q9UJC3|HOOK1_HUMAN Hook homolog 1 (h-hook1) (hHK1) 31 1.00
sp|P58460|EGSA_SULTO Glycerol-1-phosphate dehydrogenase [NA... 29 2.9
sp|Q05482|ATI_CAMPC A-type inclusion protein (ATI) 29 3.8
sp|Q9TKP8|MATK_LOTPU Maturase K (Intron maturase) 28 4.9
sp|P39886|TCMA_STRGA Tetracenomycin C resistance and export... 28 8.4
sp|Q9X4Q2|METK_STRST S-adenosylmethionine synthetase (Methi... 28 8.4
>sp|Q86VS8|HOOK3_HUMAN Hook homolog 3 (hHK3)
Length = 718
Score = 35.4 bits (80), Expect = 0.040
Identities = 27/113 (23%), Positives = 47/113 (41%)
Frame = +3
Query: 6 YNSEITDIRGLCSQKEKDFLKADFELKRAIEKVKSLERDXXXXXXXXXXXXXXNDELHLN 185
Y ++ +++ S++ K K DFE KR EKV SL+++ +EL
Sbjct: 371 YKRQVVELQNRLSEESKKADKLDFEYKRLKEKVDSLQKEKDRLRTERDSLKETIEELRC- 429
Query: 186 SYTVGSESRADPNSEIHDNFNPIDESLDIVEIPIHLRERVSRLQKEVKQMRRN 344
E + + +SL + +RE++ RLQ E K ++ N
Sbjct: 430 --VQAQEGQLTTQGLMPLGSQESSDSLAAEIVTPEIREKLIRLQHENKMLKLN 480
>sp|Q96ED9|HOOK2_HUMAN Hook homolog 2 (h-hook2) (hHK2)
Length = 719
Score = 33.5 bits (75), Expect = 0.15
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Frame = +3
Query: 27 IRGLCSQKEKDFLKAD---FELKRAIEKVKSLERDXXXXXXXXXXXXXXNDELHLNSYTV 197
++ L Q +++ +KA+ FE + EK +S+ ++ N+EL
Sbjct: 369 VQELQGQLQEEAMKAEKWLFECRNLEEKYESVTKEKERLLAERDSLREANEELRCAQLQP 428
Query: 198 GSESRADPNSEIHDNFNPIDESLDIVEIPIHLRERVSRLQKEVKQMRR 341
++ADP+ + P+D +L +P LRE + RLQ E K++ R
Sbjct: 429 RGLTQADPS--LDPTSTPVD-NLAAEILPAELRETLLRLQLENKRLCR 473
>sp|Q8BUK6|HOOK3_MOUSE Hook homolog 3
Length = 718
Score = 33.1 bits (74), Expect = 0.20
Identities = 26/113 (23%), Positives = 45/113 (39%)
Frame = +3
Query: 6 YNSEITDIRGLCSQKEKDFLKADFELKRAIEKVKSLERDXXXXXXXXXXXXXXNDELHLN 185
Y ++ +++ S + K K DFE KR EKV L+++ +EL
Sbjct: 371 YKRQVVELQNRLSDESKKADKLDFEYKRLKEKVDGLQKEKDRLRTERDSLKETIEELRC- 429
Query: 186 SYTVGSESRADPNSEIHDNFNPIDESLDIVEIPIHLRERVSRLQKEVKQMRRN 344
E + + +SL + +RE++ RLQ E K ++ N
Sbjct: 430 --VQAQEGQLTTQGLMPLGSQESSDSLAAEIVTPEIREKLIRLQHENKMLKLN 480
>sp|Q8BIL5|HOOK1_MOUSE Hook homolog 1
Length = 728
Score = 32.0 bits (71), Expect = 0.45
Identities = 27/111 (24%), Positives = 47/111 (42%)
Frame = +3
Query: 6 YNSEITDIRGLCSQKEKDFLKADFELKRAIEKVKSLERDXXXXXXXXXXXXXXNDELHLN 185
Y ++ D+ S + K FE+KR EK ++L ++ N+EL
Sbjct: 374 YKRQVQDLHTKLSSESKRADTLAFEMKRLEEKHETLLKEKERLIEQRDTLKETNEELRC- 432
Query: 186 SYTVGSESRADPNSEIHDNFNPIDESLDIVEIPIHLRERVSRLQKEVKQMR 338
S+++ D ++ + E+L +P+ RE RLQ E K +R
Sbjct: 433 -----SKAQQDHLNQADASATKSYENLAAEIMPVEYREVFIRLQHENKMLR 478
>sp|Q9UJC3|HOOK1_HUMAN Hook homolog 1 (h-hook1) (hHK1)
Length = 728
Score = 30.8 bits (68), Expect = 1.00
Identities = 27/111 (24%), Positives = 46/111 (41%)
Frame = +3
Query: 6 YNSEITDIRGLCSQKEKDFLKADFELKRAIEKVKSLERDXXXXXXXXXXXXXXNDELHLN 185
Y ++ D+ S + K FE+KR EK ++L ++ N+EL
Sbjct: 374 YKRQVQDLHVKLSSESKRADTLAFEMKRLEEKHEALLKEKERLIEQRDTLKETNEELRC- 432
Query: 186 SYTVGSESRADPNSEIHDNFNPIDESLDIVEIPIHLRERVSRLQKEVKQMR 338
S+ + D ++ + E+L +P+ RE RLQ E K +R
Sbjct: 433 -----SQVQQDHLNQTDASATKSYENLAAEIMPVEYREVFIRLQHENKMLR 478
>sp|P58460|EGSA_SULTO Glycerol-1-phosphate dehydrogenase [NAD(P)]
(sn-glycerol-1-phosphate dehydrogenase) (G-1-P
dehydrogenase) (Enantiomeric glycerophosphate synthase)
Length = 350
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/42 (35%), Positives = 28/42 (66%)
Frame = +3
Query: 228 EIHDNFNPIDESLDIVEIPIHLRERVSRLQKEVKQMRRNTLI 353
+I +NF DES+++VE+ I + V+++++ K R NT+I
Sbjct: 52 KIIENFK--DESVEVVEVKIASIDEVNKVEEMAKGSRINTII 91
>sp|Q05482|ATI_CAMPC A-type inclusion protein (ATI)
Length = 726
Score = 28.9 bits (63), Expect = 3.8
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 222 NSEIHDNFNPIDESLDIVEIPIHLRERVSRLQKEVKQMR 338
N+E+ D + I + + +H ER+ RL KE+K++R
Sbjct: 439 NAELSDKLSKI---MSLERDSVHKTERIDRLTKEIKELR 474
>sp|Q9TKP8|MATK_LOTPU Maturase K (Intron maturase)
Length = 508
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -1
Query: 101 FFNCSFQFKIC-FQKILFFLRTKTSNI 24
FF + F +C F+ I FFLRTK+S++
Sbjct: 207 FFFFLYNFYLCEFESIFFFLRTKSSHL 233
>sp|P39886|TCMA_STRGA Tetracenomycin C resistance and export protein
Length = 538
Score = 27.7 bits (60), Expect = 8.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 283 GISTMSSDSSMGLKLSWISLLG 218
G+ST+ +DS MG+ W LLG
Sbjct: 361 GMSTLEADSGMGITSLWFVLLG 382
>sp|Q9X4Q2|METK_STRST S-adenosylmethionine synthetase (Methionine adenosyltransferase)
(AdoMet synthetase) (MAT)
Length = 411
Score = 27.7 bits (60), Expect = 8.4
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 255 DESLDIVEIPIHLRERVSRLQKEVKQ 332
DE+ +++ +PIHL R+SR EV++
Sbjct: 139 DETPELMPLPIHLAHRLSRRLSEVRK 164
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,759,300
Number of Sequences: 369166
Number of extensions: 539066
Number of successful extensions: 1654
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of database: 68,354,980
effective HSP length: 86
effective length of database: 52,467,770
effective search space used: 1678968640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)