Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_N11
(580 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q16881|TRXR1_HUMAN Thioredoxin reductase 1, cytoplasmic ... 141 1e-33
sp|Q9MYY8|TRXR1_PIG Thioredoxin reductase 1, cytoplasmic (T... 141 1e-33
sp|Q9JMH6|TRXR1_MOUSE Thioredoxin reductase 1, cytoplasmic ... 140 2e-33
sp|O62768|TRXR1_BOVIN Thioredoxin reductase 1, cytoplasmic ... 137 3e-32
sp|O89049|TRXR1_RAT Thioredoxin reductase 1, cytoplasmic (T... 136 3e-32
sp|Q9Z0J5|TRXR2_RAT Thioredoxin reductase 2, mitochondrial ... 115 8e-26
sp|Q9NNW7|TRXR2_HUMAN Thioredoxin reductase 2, mitochondria... 115 1e-25
sp|Q9JLT4|TRXR2_MOUSE Thioredoxin reductase 2, mitochondria... 114 2e-25
sp|Q17745|TRXR_CAEEL Thioredoxin reductase (TR-Se) (TRR) 110 2e-24
sp|P30635|GSHR_CAEEL Probable glutathione reductase (GR) (G... 109 4e-24
>sp|Q16881|TRXR1_HUMAN Thioredoxin reductase 1, cytoplasmic precursor (TR) (TR1)
Length = 499
Score = 141 bits (355), Expect = 1e-33
Identities = 61/101 (60%), Positives = 75/101 (74%)
Frame = +2
Query: 2 IEVFHQNFKPLEWTVAHRSDNDCYGKLICNKSDNMRVIGLHVLGPNAGEITQGYAVAMRM 181
IEV+H F PLEWT+ R +N CY K+ICN DN RV+G HVLGPNAGE+TQG+A A++
Sbjct: 399 IEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKC 458
Query: 182 GATKRDFDDTIGIHPTCSETFTTLNITKSSGVDPAQSGC*G 304
G TK+ D TIGIHP C+E FTTL++TK SG Q+GC G
Sbjct: 459 GLTKKQLDSTIGIHPVCAEVFTTLSVTKRSGASILQAGCCG 499
>sp|Q9MYY8|TRXR1_PIG Thioredoxin reductase 1, cytoplasmic (TR) (TR1)
Length = 499
Score = 141 bits (355), Expect = 1e-33
Identities = 61/101 (60%), Positives = 75/101 (74%)
Frame = +2
Query: 2 IEVFHQNFKPLEWTVAHRSDNDCYGKLICNKSDNMRVIGLHVLGPNAGEITQGYAVAMRM 181
IEV+H F PLEWT+ R +N CY K+ICN DN RV+G HVLGPNAGE+TQG+A A++
Sbjct: 399 IEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKC 458
Query: 182 GATKRDFDDTIGIHPTCSETFTTLNITKSSGVDPAQSGC*G 304
G TK+ D TIGIHP C+E FTTL++TK SG Q+GC G
Sbjct: 459 GLTKKQLDSTIGIHPVCAEVFTTLSVTKRSGASILQAGCCG 499
>sp|Q9JMH6|TRXR1_MOUSE Thioredoxin reductase 1, cytoplasmic (TR) (TR1)
Length = 499
Score = 140 bits (353), Expect = 2e-33
Identities = 63/101 (62%), Positives = 76/101 (75%)
Frame = +2
Query: 2 IEVFHQNFKPLEWTVAHRSDNDCYGKLICNKSDNMRVIGLHVLGPNAGEITQGYAVAMRM 181
IEV+H F PLEWTV R +N CY K+ICN D+ RV+G HVLGPNAGE+TQG+A A++
Sbjct: 399 IEVYHSFFWPLEWTVPSRDNNKCYAKIICNLKDDERVVGFHVLGPNAGEVTQGFAAALKC 458
Query: 182 GATKRDFDDTIGIHPTCSETFTTLNITKSSGVDPAQSGC*G 304
G TK+ D TIGIHP C+E FTTL++TK SG D QSGC G
Sbjct: 459 GLTKQQLDSTIGIHPVCAEIFTTLSVTKRSGGDILQSGCCG 499
>sp|O62768|TRXR1_BOVIN Thioredoxin reductase 1, cytoplasmic (TR) (TR1)
Length = 499
Score = 137 bits (344), Expect = 3e-32
Identities = 59/101 (58%), Positives = 75/101 (74%)
Frame = +2
Query: 2 IEVFHQNFKPLEWTVAHRSDNDCYGKLICNKSDNMRVIGLHVLGPNAGEITQGYAVAMRM 181
+EV+H F PLEWT+ R +N CY K++CN DN RV+G HVLGPNAGE+TQG+A A++
Sbjct: 399 VEVYHSYFWPLEWTIPSRDNNKCYAKVVCNIKDNERVVGFHVLGPNAGEVTQGFAAALKC 458
Query: 182 GATKRDFDDTIGIHPTCSETFTTLNITKSSGVDPAQSGC*G 304
G TK D TIGIHP C+E FTTL++TK SG + Q+GC G
Sbjct: 459 GLTKDQLDSTIGIHPVCAEVFTTLSVTKRSGGNILQTGCCG 499
>sp|O89049|TRXR1_RAT Thioredoxin reductase 1, cytoplasmic (TR) (TR1) (NADPH-dependent
thioredoxin reductase)
Length = 498
Score = 136 bits (343), Expect = 3e-32
Identities = 64/101 (63%), Positives = 75/101 (74%)
Frame = +2
Query: 2 IEVFHQNFKPLEWTVAHRSDNDCYGKLICNKSDNMRVIGLHVLGPNAGEITQGYAVAMRM 181
IEV+H F PLEWTV R +N CY K+ICN DN RV+G HVLGPNAGE+TQG+A A +
Sbjct: 399 IEVYHSFFWPLEWTVPSRDNNKCYAKVICNLKDNERVVGFHVLGPNAGEVTQGFAAA-KC 457
Query: 182 GATKRDFDDTIGIHPTCSETFTTLNITKSSGVDPAQSGC*G 304
G TK+ D TIGIHP C+E FTTL++TK SG D QSGC G
Sbjct: 458 GLTKQQLDSTIGIHPVCAEIFTTLSVTKRSGGDILQSGCCG 498
>sp|Q9Z0J5|TRXR2_RAT Thioredoxin reductase 2, mitochondrial precursor (TR3)
Length = 526
Score = 115 bits (288), Expect = 8e-26
Identities = 52/101 (51%), Positives = 71/101 (70%)
Frame = +2
Query: 2 IEVFHQNFKPLEWTVAHRSDNDCYGKLICNKSDNMRVIGLHVLGPNAGEITQGYAVAMRM 181
IEV+H +KPLE+TVA R + CY K++C + V+GLH LGPNAGE+TQG+A+ ++
Sbjct: 426 IEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIQC 485
Query: 182 GATKRDFDDTIGIHPTCSETFTTLNITKSSGVDPAQSGC*G 304
GA+ T+GIHPTCSE L+I+K SG+DP +GC G
Sbjct: 486 GASYAQVMQTVGIHPTCSEEVVKLHISKRSGLDPTVTGCCG 526
>sp|Q9NNW7|TRXR2_HUMAN Thioredoxin reductase 2, mitochondrial precursor (TR3) (TR-beta)
(Selenoprotein Z) (SelZ)
Length = 524
Score = 115 bits (287), Expect = 1e-25
Identities = 51/101 (50%), Positives = 71/101 (70%)
Frame = +2
Query: 2 IEVFHQNFKPLEWTVAHRSDNDCYGKLICNKSDNMRVIGLHVLGPNAGEITQGYAVAMRM 181
+EV+H ++KPLE+TVA R + CY K++C + V+GLH LGPNAGE+TQG+A+ ++
Sbjct: 424 VEVYHAHYKPLEFTVAGRDASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKC 483
Query: 182 GATKRDFDDTIGIHPTCSETFTTLNITKSSGVDPAQSGC*G 304
GA+ T+GIHPTCSE L I+K SG+DP +GC G
Sbjct: 484 GASYAQVMRTVGIHPTCSEEVVKLRISKRSGLDPTVTGCCG 524
>sp|Q9JLT4|TRXR2_MOUSE Thioredoxin reductase 2, mitochondrial precursor (TR3)
Length = 524
Score = 114 bits (284), Expect = 2e-25
Identities = 50/101 (49%), Positives = 71/101 (70%)
Frame = +2
Query: 2 IEVFHQNFKPLEWTVAHRSDNDCYGKLICNKSDNMRVIGLHVLGPNAGEITQGYAVAMRM 181
+EV+H +KPLE+TVA R + CY K++C + V+GLH LGPNAGE+TQG+A+ ++
Sbjct: 424 VEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKC 483
Query: 182 GATKRDFDDTIGIHPTCSETFTTLNITKSSGVDPAQSGC*G 304
GA+ T+GIHPTCSE L+I+K SG++P +GC G
Sbjct: 484 GASYAQVMQTVGIHPTCSEEVVKLHISKRSGLEPTVTGCCG 524
>sp|Q17745|TRXR_CAEEL Thioredoxin reductase (TR-Se) (TRR)
Length = 667
Score = 110 bits (276), Expect = 2e-24
Identities = 51/103 (49%), Positives = 72/103 (69%), Gaps = 2/103 (1%)
Frame = +2
Query: 2 IEVFHQNFKPLEWTVAHRSDND-CYGKLICNKSDNMRVIGLHVLGPNAGEITQGYAVAMR 178
I ++H F PLE+T++ R D D CY K+IC +++ +V+G H+L PNAGE+TQG+ +A++
Sbjct: 565 IIIYHNVFNPLEYTISERMDKDHCYLKMICLRNEEEKVVGFHILTPNAGEVTQGFGIALK 624
Query: 179 MGATKRDFDDTIGIHPTCSETFTTLNITKSSGVDPAQ-SGC*G 304
+ A K DFD IGIHPT +E FTTL + K G + Q SGC G
Sbjct: 625 LAAKKADFDRLIGIHPTVAENFTTLTLEKKEGDEELQASGCCG 667
>sp|P30635|GSHR_CAEEL Probable glutathione reductase (GR) (GRase)
Length = 503
Score = 109 bits (273), Expect = 4e-24
Identities = 50/102 (49%), Positives = 66/102 (64%), Gaps = 1/102 (0%)
Frame = +2
Query: 2 IEVFHQNFKPLEWTVAHRSDND-CYGKLICNKSDNMRVIGLHVLGPNAGEITQGYAVAMR 178
IEVFH +F P E+ V D+ CY K +C + ++ +++GLH +GPNA E+ QGYAVA R
Sbjct: 402 IEVFHSHFTPFEYVVPQNKDSGFCYVKAVCTRDESQKILGLHFVGPNAAEVIQGYAVAFR 461
Query: 179 MGATKRDFDDTIGIHPTCSETFTTLNITKSSGVDPAQSGC*G 304
+G + D +TI IHP SE F L+ITK SG DP GC G
Sbjct: 462 VGISMSDLQNTIAIHPCSSEEFVKLHITKRSGQDPRTQGCCG 503
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,815,789
Number of Sequences: 369166
Number of extensions: 1201791
Number of successful extensions: 2740
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2730
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4259329035
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)