Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_N07
(457 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18067|RAB7_CANFA Ras-related protein Rab-7 65 5e-11
sp|P51150|RAB7_MOUSE Ras-related protein Rab-7 >gi|1709999|... 65 9e-11
sp|P09527|RAB7_RAT Ras-related protein Rab-7 (RAS-related p... 65 9e-11
sp|O97572|RAB7_RABIT Ras-related protein Rab-7 64 1e-10
sp|Q9C2L8|RAB7_NEUCR Probable Ras-related protein Rab7 63 3e-10
sp|O94655|YPT7_SCHPO Ras-related protein ypt7 58 1e-08
sp|P36411|RAB7_DICDI Ras-related protein Rab7 51 1e-06
sp|Q41640|RAB7_VIGAC Ras-related protein Rab7 50 2e-06
sp|Q9XER8|RAB7_GOSHI Ras-related protein Rab7 49 4e-06
sp|Q39573|YPTC5_CHLRE GTP-binding protein YPTC5 49 5e-06
>sp|P18067|RAB7_CANFA Ras-related protein Rab-7
Length = 207
Score = 65.5 bits (158), Expect = 5e-11
Identities = 32/63 (50%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Frame = +1
Query: 1 SKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLN-DDQHSNRQNR 177
SK +IPYFE SAKEA+NVEQAF +AR AL QE +V++ ++FP I L+ +D+
Sbjct: 145 SKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKTSAES 204
Query: 178 CGC 186
C C
Sbjct: 205 CSC 207
>sp|P51150|RAB7_MOUSE Ras-related protein Rab-7
sp|P51149|RAB7_HUMAN Ras-related protein Rab-7
Length = 207
Score = 64.7 bits (156), Expect = 9e-11
Identities = 32/63 (50%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Frame = +1
Query: 1 SKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLN-DDQHSNRQNR 177
SK +IPYFE SAKEA+NVEQAF +AR AL QE +V++ ++FP I L+ +D+
Sbjct: 145 SKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKASAES 204
Query: 178 CGC 186
C C
Sbjct: 205 CSC 207
>sp|P09527|RAB7_RAT Ras-related protein Rab-7 (RAS-related protein P23) (RAS-related
protein BRL-RAS)
Length = 207
Score = 64.7 bits (156), Expect = 9e-11
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Frame = +1
Query: 1 SKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLNDDQHSNRQ-NR 177
SK +IPYFE SAKEA+NVEQAF +AR AL QE +V++ ++FP I L+ ++ +
Sbjct: 145 SKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASAES 204
Query: 178 CGC 186
C C
Sbjct: 205 CSC 207
>sp|O97572|RAB7_RABIT Ras-related protein Rab-7
Length = 207
Score = 64.3 bits (155), Expect = 1e-10
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Frame = +1
Query: 1 SKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLN-DDQHSNRQNR 177
SK +IPYFE SAKEA+NVEQAF +AR AL QE +V++ ++FP + L+ +D+
Sbjct: 145 SKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPMKLDKNDRAKTSAES 204
Query: 178 CGC 186
C C
Sbjct: 205 CSC 207
>sp|Q9C2L8|RAB7_NEUCR Probable Ras-related protein Rab7
Length = 205
Score = 63.2 bits (152), Expect = 3e-10
Identities = 33/64 (51%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Frame = +1
Query: 1 SKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDF--PTQIHLNDDQHSNRQN 174
SKG+IPYFE SAKEA+NVEQAF +AR AL QE + DF P IH+ +D ++
Sbjct: 147 SKGNIPYFETSAKEAINVEQAFEVIARNALMQEESEEFSGDFQDPINIHIEND-----RD 201
Query: 175 RCGC 186
C C
Sbjct: 202 GCAC 205
>sp|O94655|YPT7_SCHPO Ras-related protein ypt7
Length = 205
Score = 57.8 bits (138), Expect = 1e-08
Identities = 28/62 (45%), Positives = 42/62 (67%)
Frame = +1
Query: 1 SKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLNDDQHSNRQNRC 180
++G+IPYFE SAKEA+NV++AF VA+ AL + DI +DF IHL+ + +++ C
Sbjct: 147 ARGEIPYFETSAKEAINVQEAFETVAKLALENMDSDDIAADFTDPIHLDME---SQKTSC 203
Query: 181 GC 186
C
Sbjct: 204 YC 205
>sp|P36411|RAB7_DICDI Ras-related protein Rab7
Length = 203
Score = 50.8 bits (120), Expect = 1e-06
Identities = 27/60 (45%), Positives = 36/60 (60%)
Frame = +1
Query: 1 SKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLNDDQHSNRQNRC 180
SKG+IPYFE SAKEA+NVEQAF +AR A+ E+ + PT I + + + C
Sbjct: 146 SKGNIPYFETSAKEAINVEQAFQTIARNAIKLED--GLVFPIPTNIQVIPEPQPAKSGCC 203
>sp|Q41640|RAB7_VIGAC Ras-related protein Rab7
Length = 206
Score = 50.4 bits (119), Expect = 2e-06
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +1
Query: 1 SKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDI 114
SKG+IPYFE SAKE NV+ AF +A+AALA E++ DI
Sbjct: 148 SKGNIPYFETSAKEDFNVDAAFLCIAKAALANEHEQDI 185
>sp|Q9XER8|RAB7_GOSHI Ras-related protein Rab7
Length = 207
Score = 49.3 bits (116), Expect = 4e-06
Identities = 27/62 (43%), Positives = 33/62 (53%)
Frame = +1
Query: 1 SKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLNDDQHSNRQNRC 180
SKG+IPYFE SAKE NV+ AF +AR AL E + +I P I + R C
Sbjct: 148 SKGNIPYFETSAKEGFNVDAAFECIARNALKNEPEEEIY--LPETIDVASGGRPQRSTGC 205
Query: 181 GC 186
C
Sbjct: 206 EC 207
>sp|Q39573|YPTC5_CHLRE GTP-binding protein YPTC5
Length = 206
Score = 48.9 bits (115), Expect = 5e-06
Identities = 26/62 (41%), Positives = 36/62 (58%)
Frame = +1
Query: 1 SKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLNDDQHSNRQNRC 180
SKG IPYFE SAKE +NVE AF + R AL E + ++ P + +N + ++ R
Sbjct: 148 SKGSIPYFETSAKEDINVEAAFTCITRNALRNEKEEELF--MPDAVDMNTT--ATQRKRA 203
Query: 181 GC 186
GC
Sbjct: 204 GC 205
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,751,330
Number of Sequences: 369166
Number of extensions: 797458
Number of successful extensions: 2059
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2059
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2484837250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)