Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_M04-2
(520 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P09671|SODM_MOUSE Superoxide dismutase [Mn], mitochondri... 226 2e-59
sp|P07895|SODM_RAT Superoxide dismutase [Mn], mitochondrial... 225 6e-59
sp|P41976|SODM_BOVIN Superoxide dismutase [Mn], mitochondri... 225 6e-59
sp|Q8HXP4|SODM_MACFU Superoxide dismutase [Mn], mitochondri... 224 7e-59
sp|Q8HXP6|SODM_PONPY Superoxide dismutase [Mn], mitochondri... 223 2e-58
sp|P04179|SODM_HUMAN Superoxide dismutase [Mn], mitochondri... 223 2e-58
sp|Q8HXP7|SODM_PANTR Superoxide dismutase [Mn], mitochondrial 223 2e-58
sp|Q8HXP1|SODM_CEBAP Superoxide dismutase [Mn], mitochondri... 223 2e-58
sp|Q5FB30|SODM_MACNE Superoxide dismutase [Mn], mitochondri... 223 3e-58
sp|Q8HXP5|SODM_HYLLA Superoxide dismutase [Mn], mitochondrial 221 6e-58
>sp|P09671|SODM_MOUSE Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 226 bits (577), Expect = 2e-59
Identities = 100/152 (65%), Positives = 122/152 (80%)
Frame = +3
Query: 63 KHTLPDLPYDYNALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISM 242
KH+LPDLPYDY ALEP I+A IM++HH KHHAAYVNNLN+ E+ EA+ K DV +++
Sbjct: 25 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNATEEKYHEALAKGDVTTQVAL 84
Query: 243 QNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQG 422
Q A+KFNGGGH+NH+IFW NL PKGGGEP G LL A++R+FGSFE FK +L+A +VG+QG
Sbjct: 85 QPALKFNGGGHINHTIFWTNLSPKGGGEPKGELLEAIKRDFGSFEKFKEKLTAVSVGVQG 144
Query: 423 SGWAWLGLNKKNGRLHITTCGNQDPLEATTGL 518
SGW WLG NK+ GRL I C NQDPL+ TTGL
Sbjct: 145 SGWGWLGFNKEQGRLQIAACSNQDPLQGTTGL 176
>sp|P07895|SODM_RAT Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 225 bits (573), Expect = 6e-59
Identities = 100/152 (65%), Positives = 120/152 (78%)
Frame = +3
Query: 63 KHTLPDLPYDYNALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISM 242
KH+LPDLPYDY ALEP I+A IM++HH KHHA YVNNLN E+ EA+ K DV +++
Sbjct: 25 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHATYVNNLNVTEEKYHEALAKGDVTTQVAL 84
Query: 243 QNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQG 422
Q A+KFNGGGH+NHSIFW NL PKGGGEP G LL A++R+FGSFE FK +L+A +VG+QG
Sbjct: 85 QPALKFNGGGHINHSIFWTNLSPKGGGEPKGELLEAIKRDFGSFEKFKEKLTAVSVGVQG 144
Query: 423 SGWAWLGLNKKNGRLHITTCGNQDPLEATTGL 518
SGW WLG NK+ GRL I C NQDPL+ TTGL
Sbjct: 145 SGWGWLGFNKEQGRLQIAACSNQDPLQGTTGL 176
>sp|P41976|SODM_BOVIN Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 225 bits (573), Expect = 6e-59
Identities = 101/152 (66%), Positives = 120/152 (78%)
Frame = +3
Query: 63 KHTLPDLPYDYNALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISM 242
KH+LPDLPYDY ALEP I+A IM++HH KHHAAYVNNLN A E+ EA+ K DV I++
Sbjct: 25 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVAEEKYREALEKGDVTAQIAL 84
Query: 243 QNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQG 422
Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSF FK +L+A +VG+QG
Sbjct: 85 QPALKFNGGGHINHSIFWTNLSPNGGGEPQGELLEAIKRDFGSFAKFKEKLTAVSVGVQG 144
Query: 423 SGWAWLGLNKKNGRLHITTCGNQDPLEATTGL 518
SGW WLG NK+ GRL I C NQDPL+ TTGL
Sbjct: 145 SGWGWLGFNKEQGRLQIAACSNQDPLQGTTGL 176
>sp|Q8HXP4|SODM_MACFU Superoxide dismutase [Mn], mitochondrial
sp|Q8HXP3|SODM_MACFA Superoxide dismutase [Mn], mitochondrial
sp|Q8HXP2|SODM_MACMU Superoxide dismutase [Mn], mitochondrial
Length = 198
Score = 224 bits (572), Expect = 7e-59
Identities = 101/152 (66%), Positives = 121/152 (79%)
Frame = +3
Query: 63 KHTLPDLPYDYNALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISM 242
KH+LPDLPYDY ALEP I+A IM++HH KHHAAYVNNLN E+ EA+ K DV I++
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIAL 60
Query: 243 QNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQG 422
Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSFE FK +L+AA+VG+QG
Sbjct: 61 QPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFEKFKEKLTAASVGVQG 120
Query: 423 SGWAWLGLNKKNGRLHITTCGNQDPLEATTGL 518
SGW WLG NK+ G+L I C NQDPL+ TTGL
Sbjct: 121 SGWGWLGFNKERGQLQIAACPNQDPLQGTTGL 152
>sp|Q8HXP6|SODM_PONPY Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 223 bits (568), Expect = 2e-58
Identities = 100/152 (65%), Positives = 120/152 (78%)
Frame = +3
Query: 63 KHTLPDLPYDYNALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISM 242
KH+LPDLPYDY ALEP I+A IM++HH KHHAAYVNNLN E+ EA+ K DV I++
Sbjct: 25 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIAL 84
Query: 243 QNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQG 422
Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSF+ FK +L+AA+VG+QG
Sbjct: 85 QPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQG 144
Query: 423 SGWAWLGLNKKNGRLHITTCGNQDPLEATTGL 518
SGW WLG NK+ G L I C NQDPL+ TTGL
Sbjct: 145 SGWGWLGFNKERGHLQIAACPNQDPLQGTTGL 176
>sp|P04179|SODM_HUMAN Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 223 bits (568), Expect = 2e-58
Identities = 100/152 (65%), Positives = 120/152 (78%)
Frame = +3
Query: 63 KHTLPDLPYDYNALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISM 242
KH+LPDLPYDY ALEP I+A IM++HH KHHAAYVNNLN E+ EA+ K DV I++
Sbjct: 25 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIAL 84
Query: 243 QNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQG 422
Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSF+ FK +L+AA+VG+QG
Sbjct: 85 QPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQG 144
Query: 423 SGWAWLGLNKKNGRLHITTCGNQDPLEATTGL 518
SGW WLG NK+ G L I C NQDPL+ TTGL
Sbjct: 145 SGWGWLGFNKERGHLQIAACPNQDPLQGTTGL 176
>sp|Q8HXP7|SODM_PANTR Superoxide dismutase [Mn], mitochondrial
Length = 198
Score = 223 bits (568), Expect = 2e-58
Identities = 100/152 (65%), Positives = 120/152 (78%)
Frame = +3
Query: 63 KHTLPDLPYDYNALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISM 242
KH+LPDLPYDY ALEP I+A IM++HH KHHAAYVNNLN E+ EA+ K DV I++
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIAL 60
Query: 243 QNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQG 422
Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSF+ FK +L+AA+VG+QG
Sbjct: 61 QPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQG 120
Query: 423 SGWAWLGLNKKNGRLHITTCGNQDPLEATTGL 518
SGW WLG NK+ G L I C NQDPL+ TTGL
Sbjct: 121 SGWGWLGFNKERGHLQIAACPNQDPLQGTTGL 152
>sp|Q8HXP1|SODM_CEBAP Superoxide dismutase [Mn], mitochondrial
sp|Q8HXP0|SODM_CALJA Superoxide dismutase [Mn], mitochondrial
Length = 198
Score = 223 bits (568), Expect = 2e-58
Identities = 100/152 (65%), Positives = 119/152 (78%)
Frame = +3
Query: 63 KHTLPDLPYDYNALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISM 242
KH+LPDLPYDY ALEP I+A IM++HH KHHAAYVNNLN E+ EA+ K DV I++
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNDTEEKYKEALAKGDVTAQIAL 60
Query: 243 QNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQG 422
Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSF+ FK L+AA+VG+QG
Sbjct: 61 QPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKERLTAASVGVQG 120
Query: 423 SGWAWLGLNKKNGRLHITTCGNQDPLEATTGL 518
SGW WLG NK+ G L I C NQDPL+ TTGL
Sbjct: 121 SGWGWLGFNKERGHLQIAACPNQDPLQGTTGL 152
>sp|Q5FB30|SODM_MACNE Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 223 bits (567), Expect = 3e-58
Identities = 100/152 (65%), Positives = 121/152 (79%)
Frame = +3
Query: 63 KHTLPDLPYDYNALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISM 242
KH+LPDLPYDY ALEP I+A IM++HH KHHAAYVNNLN E+ EA+ K DV I++
Sbjct: 25 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIAL 84
Query: 243 QNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQG 422
Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSFE +K +L+AA+VG+QG
Sbjct: 85 QPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFEKYKEKLTAASVGVQG 144
Query: 423 SGWAWLGLNKKNGRLHITTCGNQDPLEATTGL 518
SGW WLG NK+ G+L I C NQDPL+ TTGL
Sbjct: 145 SGWGWLGFNKERGQLQIAACLNQDPLQGTTGL 176
>sp|Q8HXP5|SODM_HYLLA Superoxide dismutase [Mn], mitochondrial
Length = 198
Score = 221 bits (564), Expect = 6e-58
Identities = 99/152 (65%), Positives = 119/152 (78%)
Frame = +3
Query: 63 KHTLPDLPYDYNALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISM 242
KH+LPDLPYDY ALEP I+A IM++HH KHHAAYVNNLN E+ EA+ K DV I++
Sbjct: 1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIAL 60
Query: 243 QNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQG 422
Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSF+ FK +L+A +VG+QG
Sbjct: 61 QPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTATSVGVQG 120
Query: 423 SGWAWLGLNKKNGRLHITTCGNQDPLEATTGL 518
SGW WLG NK+ G L I C NQDPL+ TTGL
Sbjct: 121 SGWGWLGFNKERGHLQIAACPNQDPLQGTTGL 152
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,367,309
Number of Sequences: 369166
Number of extensions: 1314799
Number of successful extensions: 4184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3988
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3403581975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)