Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_M04-1
(317 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O15144|ARPC2_HUMAN Actin-related protein 2/3 complex sub... 135 4e-32
sp|Q9CVB6|ARPC2_MOUSE Actin-related protein 2/3 complex sub... 134 6e-32
sp|Q9VIM5|ARPC2_DROME Probable actin-related protein 2/3 co... 127 8e-30
sp|Q7PVX8|ARPC2_ANOGA Probable actin-related protein 2/3 co... 125 3e-29
sp|Q8WTM6|ARPC2_CAEEL Probable actin-related protein 2/3 co... 117 6e-27
sp|O14241|ARPC2_SCHPO ARP2/3 complex 34 kDa subunit (p34-ARC) 97 1e-20
sp|P53731|ARPC2_YEAST ARP2/3 complex 34 kDa subunit (p34-ARC) 96 2e-20
sp|O96623|ARPC2_DICDI Actin-related protein 2/3 complex sub... 91 1e-18
sp|Q9VQG2|APH1_DROME Gamma-secretase subunit Aph-1 (Preseni... 30 1.7
sp|P28955|TEGU_EHV1B Large tegument protein 28 6.5
>sp|O15144|ARPC2_HUMAN Actin-related protein 2/3 complex subunit 2 (ARP2/3 complex 34 kDa
subunit) (p34-ARC)
sp|Q5R5Z5|ARPC2_PONPY Actin-related protein 2/3 complex subunit 2 (ARP2/3 complex 34 kDa
subunit) (p34-ARC)
Length = 300
Score = 135 bits (339), Expect = 4e-32
Identities = 67/105 (63%), Positives = 79/105 (75%)
Frame = +1
Query: 1 ELTEARRRVDRAPQVLYSPKEPPIELKGTKAATGDNVAYITFVLFNRHFATPAARKNSID 180
E E RR APQVL+S +EPP+ELK T AA GDN+ YITFVLF RH +AR N+I+
Sbjct: 184 EFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRH-TNASARDNTIN 242
Query: 181 LIHTFRNYLHYHIKCSKAYIHMRMRAKSENFLKLLKRASTKETKE 315
LIHTFR+YLHYHIKCSKAYIH RMRAK+ +FLK+L RA K+
Sbjct: 243 LIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKK 287
>sp|Q9CVB6|ARPC2_MOUSE Actin-related protein 2/3 complex subunit 2 (ARP2/3 complex 34 kDa
subunit) (p34-ARC)
Length = 191
Score = 134 bits (337), Expect = 6e-32
Identities = 66/98 (67%), Positives = 76/98 (77%)
Frame = +1
Query: 1 ELTEARRRVDRAPQVLYSPKEPPIELKGTKAATGDNVAYITFVLFNRHFATPAARKNSID 180
E E RR APQVL+S +EPP+ELK T AA GDN+ YITFVLF RH AR N+I+
Sbjct: 91 EFKEGRRASHTAPQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRH-TNATARDNTIN 149
Query: 181 LIHTFRNYLHYHIKCSKAYIHMRMRAKSENFLKLLKRA 294
LIHTFR+YLHYHIKCSKAYIH RMRAK+ +FLK+L RA
Sbjct: 150 LIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRA 187
>sp|Q9VIM5|ARPC2_DROME Probable actin-related protein 2/3 complex subunit 2 (ARP2/3
complex 34 kDa subunit) (p34-ARC)
Length = 301
Score = 127 bits (319), Expect = 8e-30
Identities = 62/98 (63%), Positives = 73/98 (74%)
Frame = +1
Query: 1 ELTEARRRVDRAPQVLYSPKEPPIELKGTKAATGDNVAYITFVLFNRHFATPAARKNSID 180
EL E RR APQVL+S +EPP+EL T A GDN+ Y+TFVLF RH R N+I+
Sbjct: 184 ELREGRRASHTAPQVLFSHREPPLELANTDARVGDNIGYVTFVLFPRH-TNKETRDNTIN 242
Query: 181 LIHTFRNYLHYHIKCSKAYIHMRMRAKSENFLKLLKRA 294
LIH FR+YLHYHIKCSKAYIH RMRAK+ +FLK+L RA
Sbjct: 243 LIHMFRDYLHYHIKCSKAYIHSRMRAKTSDFLKVLNRA 280
>sp|Q7PVX8|ARPC2_ANOGA Probable actin-related protein 2/3 complex subunit 2 (ARP2/3
complex 34 kDa subunit) (p34-ARC)
Length = 304
Score = 125 bits (314), Expect = 3e-29
Identities = 62/98 (63%), Positives = 73/98 (74%)
Frame = +1
Query: 1 ELTEARRRVDRAPQVLYSPKEPPIELKGTKAATGDNVAYITFVLFNRHFATPAARKNSID 180
EL E RR APQVL+S +EPP+EL T A G+N+ Y+TFVLF RH A R N+I+
Sbjct: 187 ELREGRRASHTAPQVLFSHREPPLELANTGARVGENIGYVTFVLFPRHTAKET-RDNTIN 245
Query: 181 LIHTFRNYLHYHIKCSKAYIHMRMRAKSENFLKLLKRA 294
LIH FR+YLHYHIKCSKAYIH RMRAK+ FLK+L RA
Sbjct: 246 LIHMFRDYLHYHIKCSKAYIHSRMRAKTTEFLKVLNRA 283
>sp|Q8WTM6|ARPC2_CAEEL Probable actin-related protein 2/3 complex subunit 2 (ARP2/3
complex 34 kDa subunit) (p34-ARC)
Length = 301
Score = 117 bits (294), Expect = 6e-27
Identities = 60/99 (60%), Positives = 71/99 (71%), Gaps = 1/99 (1%)
Frame = +1
Query: 1 ELTEARRRVDRAPQVLYSPKEPPIELKGT-KAATGDNVAYITFVLFNRHFATPAARKNSI 177
E E R+ AP VLYS EPP+ELK +A GDNV YITFVLF RH + N+I
Sbjct: 185 EFREGRKASQTAPAVLYSLGEPPLELKDLPEARVGDNVGYITFVLFPRH-TNKKTKDNTI 243
Query: 178 DLIHTFRNYLHYHIKCSKAYIHMRMRAKSENFLKLLKRA 294
DLIH+FR+YLHYHIKCSK Y+H RMRAK+ +FLK+L RA
Sbjct: 244 DLIHSFRDYLHYHIKCSKVYLHTRMRAKTTDFLKVLNRA 282
>sp|O14241|ARPC2_SCHPO ARP2/3 complex 34 kDa subunit (p34-ARC)
Length = 317
Score = 97.1 bits (240), Expect = 1e-20
Identities = 50/101 (49%), Positives = 69/101 (68%), Gaps = 3/101 (2%)
Frame = +1
Query: 1 ELTEARRR--VDRAPQVLYSPKEPPIELKGTKAAT-GDNVAYITFVLFNRHFATPAARKN 171
E +ARRR + APQVL+S ++PP+E++ + GD+ ++TFVLF RHF TP R++
Sbjct: 199 EFVDARRRPAIQTAPQVLFSYRDPPLEIRDIQGIQKGDDFGFVTFVLFERHF-TPQNRED 257
Query: 172 SIDLIHTFRNYLHYHIKCSKAYIHMRMRAKSENFLKLLKRA 294
I I FRN LH+HIK SKAY+H RMR + +F K+L RA
Sbjct: 258 CISHIQVFRNTLHFHIKASKAYMHQRMRKRVADFQKVLNRA 298
>sp|P53731|ARPC2_YEAST ARP2/3 complex 34 kDa subunit (p34-ARC)
Length = 342
Score = 96.3 bits (238), Expect = 2e-20
Identities = 54/111 (48%), Positives = 69/111 (62%), Gaps = 6/111 (5%)
Frame = +1
Query: 1 ELTEARRR---VDRAPQVLYSPKEPPIELKGT---KAATGDNVAYITFVLFNRHFATPAA 162
E +AR+R + APQVLYS EPP+ELK + +ITFVLF RHF T
Sbjct: 210 EFVDARKRNRQIQSAPQVLYS-HEPPLELKRLYQPPKVAEQSRRFITFVLFPRHFQTKEL 268
Query: 163 RKNSIDLIHTFRNYLHYHIKCSKAYIHMRMRAKSENFLKLLKRASTKETKE 315
+ +SI + FRNY HYHIKCSKAY+H RMR + ++F+K+L RA E E
Sbjct: 269 QFHSICQLTLFRNYFHYHIKCSKAYMHSRMRFRVDSFIKVLNRAKVDEDDE 319
>sp|O96623|ARPC2_DICDI Actin-related protein 2/3 complex subunit 2 (ARP2/3 complex 34 kDa
subunit) (p34-ARC)
Length = 293
Score = 90.5 bits (223), Expect = 1e-18
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Frame = +1
Query: 10 EARRRVDRAPQVLYSPKEPPIELKGTKAATGD--NVAYITFVLFNRHFATPAARKNSIDL 183
+ R+ + P + +S K+PP+ELKG K N +++FVLF H P + S DL
Sbjct: 180 DVRKTISNVPSITFSQKDPPLELKGVKGVRAGQANHGFVSFVLFPAHIKKP---QESADL 236
Query: 184 IHTFRNYLHYHIKCSKAYIHMRMRAKSENFLKLLKRA 294
I TFR+YLHYHIKC+K Y+H MR + E+ +++L RA
Sbjct: 237 IQTFRDYLHYHIKCAKGYMHTSMRNRVESLIQVLNRA 273
>sp|Q9VQG2|APH1_DROME Gamma-secretase subunit Aph-1 (Presenilin-stabilization factor)
Length = 238
Score = 30.0 bits (66), Expect = 1.7
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 145 FATPAARKNSIDLIHTFRNYLHYHIKCSKAYIHMRMRAKSENFLKLLKRASTKE 306
F T AA+ SI L+HTF + + ++ + YIH+ S F+ L+ + E
Sbjct: 147 FVTSAAQALSIILLHTFWSVIFFNAFDTNNYIHIGYVVFSHLFVSLITLLNANE 200
>sp|P28955|TEGU_EHV1B Large tegument protein
Length = 3421
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 4 LTEARRRVDRA-PQVLYSPKEPPIELKGTKAATGDNVA 114
L EA+ +D A PQVL K P+E + A GD +A
Sbjct: 1836 LREAKSSIDTAFPQVLLDAKGVPVEYRVCYRAVGDKLA 1873
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,543,284
Number of Sequences: 369166
Number of extensions: 420603
Number of successful extensions: 1240
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 68,354,980
effective HSP length: 74
effective length of database: 54,684,590
effective search space used: 1695222290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)