Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_L10
(537 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4 112 4e-25
sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (Mm... 111 1e-24
sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2 110 3e-24
sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (He... 109 5e-24
sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ... 109 5e-24
sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1) 107 2e-23
sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 (AtJ3) (AtDjA3) 105 7e-23
sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1) 104 1e-22
sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 (AtDjA2) 104 1e-22
sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1 100 3e-21
>sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4
Length = 397
Score = 112 bits (281), Expect = 4e-25
Identities = 62/141 (43%), Positives = 89/141 (63%)
Frame = +3
Query: 3 LVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFD 182
L ++LCGFK+TI TLDNRILV+ +K GEVIK+ + R + +EGMP YK+P E+G LIIQF
Sbjct: 267 LSEALCGFKKTIKTLDNRILVITSKAGEVIKHGDLRCVRDEGMPIYKAPLEKGILIIQFL 326
Query: 183 VVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHER 362
V+FPE ++L +KL +L ++LPP Q D+M + E L + P+ N + +
Sbjct: 327 VIFPEKHWLSLEKLPQLEALLPPRQKVRITDDMDQVE---LKEFCPNEQN------WRQH 377
Query: 363 HHVYDSDDEGGMPGGAQRVQC 425
Y+ D++G G VQC
Sbjct: 378 REAYEEDEDGPQAG----VQC 394
>sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (MmDjA4)
Length = 397
Score = 111 bits (277), Expect = 1e-24
Identities = 61/141 (43%), Positives = 88/141 (62%)
Frame = +3
Query: 3 LVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFD 182
L ++LCGFK+TI TLD+R+LV+ +K GEVIK+ + + I NEGMP YK+P E+G +IIQF
Sbjct: 267 LSEALCGFKKTIKTLDDRVLVISSKSGEVIKHGDLKCIRNEGMPIYKAPLEKGVMIIQFL 326
Query: 183 VVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHER 362
VVFPE +L +KL +L ++LPP Q D+M + E L ++P ++ + +
Sbjct: 327 VVFPEKQWLSQEKLPQLEALLPPRQKVRITDDMDQVE---LKEFNP------NEQSWRQH 377
Query: 363 HHVYDSDDEGGMPGGAQRVQC 425
Y+ DDE G VQC
Sbjct: 378 REAYEEDDEEPRAG----VQC 394
>sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2
Length = 418
Score = 110 bits (274), Expect = 3e-24
Identities = 62/144 (43%), Positives = 93/144 (64%), Gaps = 2/144 (1%)
Frame = +3
Query: 3 LVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFD 182
L ++LCGF+ +T LDNR L++++ PGEVIK +++ I++EGMP Y+ PF +G+L I F
Sbjct: 280 LTEALCGFQFVLTHLDNRQLLIKSNPGEVIKPDQFKGINDEGMPMYQRPFMRGKLYIHFS 339
Query: 183 VVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMK--EAEECVLHPYDPSMANSKSQDRYH 356
V FP++ L D+ L S+L PS+ +S L +M+ E EE +H D ++ + ++
Sbjct: 340 VDFPDS--LTPDQCKALESVL-PSRNASRLTDMEIDECEETTMH--DVNIEEEMRRKQHQ 394
Query: 357 ERHHVYDSDDEGGMPGGAQRVQCA 428
+ YD DDEG GGAQRVQCA
Sbjct: 395 QAQEAYDEDDEG--HGGAQRVQCA 416
>sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2) (HSDJ)
Length = 397
Score = 109 bits (272), Expect = 5e-24
Identities = 58/137 (42%), Positives = 85/137 (62%)
Frame = +3
Query: 3 LVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFD 182
LV++LCGF++ I+TLDNR +V+ + PG+++K+ + + + NEGMP Y+ P+E+GRLII+F
Sbjct: 266 LVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFK 325
Query: 183 VVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHER 362
V FPEN FL DKL+ L +LP + D M + E L +DP+ + R H
Sbjct: 326 VNFPENGFLSPDKLSLLEKLLPERKEVEETDEMDQVE---LVDFDPN-----QERRRHYN 377
Query: 363 HHVYDSDDEGGMPGGAQ 413
Y+ DDE GG Q
Sbjct: 378 GEAYE-DDEHHPRGGVQ 393
>sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ-like protein 1)
sp|P63037|DNJA1_MOUSE DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2)
Length = 397
Score = 109 bits (272), Expect = 5e-24
Identities = 58/137 (42%), Positives = 85/137 (62%)
Frame = +3
Query: 3 LVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFD 182
LV++LCGF++ I+TLDNR +V+ + PG+++K+ + + + NEGMP Y+ P+E+GRLII+F
Sbjct: 266 LVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFK 325
Query: 183 VVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHER 362
V FPEN FL DKL+ L +LP + D M + E L +DP+ + R H
Sbjct: 326 VNFPENGFLSPDKLSLLEKLLPERKEVEETDEMDQVE---LVDFDPN-----QERRRHYN 377
Query: 363 HHVYDSDDEGGMPGGAQ 413
Y+ DDE GG Q
Sbjct: 378 GEAYE-DDEHHPRGGVQ 393
>sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1)
Length = 397
Score = 107 bits (266), Expect = 2e-23
Identities = 59/143 (41%), Positives = 88/143 (61%), Gaps = 1/143 (0%)
Frame = +3
Query: 3 LVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFD 182
L ++LCGF+ +T LD R L++++ PGEV+K +++AI++EGMP Y+ PF +G+L IQF
Sbjct: 259 LTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDQFKAINDEGMPMYQRPFMRGKLYIQFL 318
Query: 183 VVFPENNFLPTDKLNKLRSILPPSQFSSSLD-NMKEAEECVLHPYDPSMANSKSQDRYHE 359
V FP++ L D+ + S+LP S S D + E EE +H D ++ + ++
Sbjct: 319 VDFPDS--LTPDQCKVIESVLPRSASSQLTDMEIDECEETTMH--DVNIEEEMRRKQHQH 374
Query: 360 RHHVYDSDDEGGMPGGAQRVQCA 428
YD DDEG GG QRVQCA
Sbjct: 375 AQEAYDEDDEG--HGGGQRVQCA 395
>sp|Q94AW8|DNAJ3_ARATH Chaperone protein dnaJ 3 (AtJ3) (AtDjA3)
Length = 420
Score = 105 bits (262), Expect = 7e-23
Identities = 59/143 (41%), Positives = 86/143 (60%), Gaps = 1/143 (0%)
Frame = +3
Query: 3 LVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFD 182
L ++LCGF+ +T LD R L++++ PGEV+K Y+AI +EGMP Y+ PF +G+L I F
Sbjct: 280 LTEALCGFQFVLTHLDGRSLLIKSNPGEVVKPDSYKAISDEGMPIYQRPFMKGKLYIHFT 339
Query: 183 VVFPENNFLPTDKLNKLRSILP-PSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHE 359
V FP++ L D+ L ++LP PS S + E EE LH D ++ + + +
Sbjct: 340 VEFPDS--LSPDQTKALEAVLPKPSTAQLSDMEIDECEETTLH--DVNIEDEMRRKAQAQ 395
Query: 360 RHHVYDSDDEGGMPGGAQRVQCA 428
R D D++ PGGAQRVQCA
Sbjct: 396 REAYDDDDEDDDHPGGAQRVQCA 418
>sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1)
Length = 413
Score = 104 bits (260), Expect = 1e-22
Identities = 61/144 (42%), Positives = 90/144 (62%), Gaps = 2/144 (1%)
Frame = +3
Query: 3 LVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFD 182
LV+SLCGF+ +T LD R L++++ PGEV+K +++AI++EGMP Y+ PF +G+L I F
Sbjct: 278 LVESLCGFQFILTHLDGRQLLIKSLPGEVVKPDQFKAINDEGMPMYQRPFMKGKLYIHFS 337
Query: 183 VVFPENNFLPTDKLNKLRSILPPSQFSSSLDNMK--EAEECVLHPYDPSMANSKSQDRYH 356
V FP++ L ++ L +LPP + S L +M+ E EE LH N + + R
Sbjct: 338 VEFPDS--LNPEQCKALEGVLPP-RTSVQLSDMELDECEETTLHD-----VNIEEEMRRK 389
Query: 357 ERHHVYDSDDEGGMPGGAQRVQCA 428
+ YD D++ M GGAQRVQCA
Sbjct: 390 QAQEAYDEDED--MHGGAQRVQCA 411
>sp|P42825|DNAJ2_ARATH Chaperone protein dnaJ 2 (AtDjA2)
Length = 419
Score = 104 bits (260), Expect = 1e-22
Identities = 59/143 (41%), Positives = 88/143 (61%), Gaps = 1/143 (0%)
Frame = +3
Query: 3 LVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFD 182
L ++LCGF+ +T LD R L++++KPGEV+K Y+AI +EGMP Y+ PF +G+L I F
Sbjct: 281 LTEALCGFQFVLTHLDKRQLLIKSKPGEVVKPDSYKAISDEGMPIYQRPFMKGKLYIHFT 340
Query: 183 VVFPENNFLPTDKLNKLRSILP-PSQFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHE 359
V FPE+ L D+ + ++LP P++ + S + + EE LH + + + +
Sbjct: 341 VEFPES--LSPDQTKAIEAVLPKPTKAAISDMEIDDCEETTLHDVN---IEDEMKRKAQA 395
Query: 360 RHHVYDSDDEGGMPGGAQRVQCA 428
+ YD DDE PGGAQRVQCA
Sbjct: 396 QREAYD-DDEEDHPGGAQRVQCA 417
>sp|P43644|DNJH_ATRNU DnaJ protein homolog ANJ1
Length = 417
Score = 100 bits (248), Expect = 3e-21
Identities = 55/143 (38%), Positives = 86/143 (60%), Gaps = 1/143 (0%)
Frame = +3
Query: 3 LVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRAIDNEGMPKYKSPFEQGRLIIQFD 182
L ++LCGF+ +T LD R L++++ GEV+K +++AI++EGMP Y+ PF +G++ I F
Sbjct: 280 LTEALCGFRFVLTHLDGRQLLIKSNLGEVVKPDQFKAIEDEGMPIYQRPFMKGKMYIHFT 339
Query: 183 VVFPENNFLPTDKLNKLRSILPPS-QFSSSLDNMKEAEECVLHPYDPSMANSKSQDRYHE 359
V FP++ L D++ L +ILPP S + + E EE LH + ++ + +
Sbjct: 340 VEFPDS--LNPDQVKSLEAILPPKPSMSLTYMELDECEETTLH--NVNIEEEMKRKQTQA 395
Query: 360 RHHVYDSDDEGGMPGGAQRVQCA 428
+ YD DDE P G QRVQCA
Sbjct: 396 QQEAYDEDDE---PAGGQRVQCA 415
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,773,067
Number of Sequences: 369166
Number of extensions: 1116940
Number of successful extensions: 3127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3108
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3699545625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)