Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_K24
(290 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O34261|TONB_XANCP Protein tonB 28 5.0
sp|Q767L8|MDC1_PIG Mediator of DNA damage checkpoint protein 1 28 8.5
>sp|O34261|TONB_XANCP Protein tonB
Length = 223
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -1
Query: 203 PPSPQRAAGRGRTVQLISM*AIGSGNNVTKNVSTNWRDVDAALL 72
PP+ RA +G + ++ + A G+ NV+ S+ RD+D A +
Sbjct: 149 PPAAFRAGVQGEVILIVDVDANGNVTNVSVEKSSRNRDLDRAAM 192
>sp|Q767L8|MDC1_PIG Mediator of DNA damage checkpoint protein 1
Length = 2042
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 130 PEPIAHIDIN*TVLPRPAARCGEGGTHRSS 219
PEP + V+P+P R G THRSS
Sbjct: 1237 PEPQPSTPTDQPVVPKPTLRAPRGRTHRSS 1266
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,024,011
Number of Sequences: 369166
Number of extensions: 465551
Number of successful extensions: 1311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 68,354,980
effective HSP length: 66
effective length of database: 56,162,470
effective search space used: 1684874100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)