Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_K18
(383 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P97776|ADA18_RAT ADAM 18 (A disintegrin and metalloprote... 34 0.12
sp|Q9R157|ADA18_MOUSE ADAM 18 precursor (A disintegrin and ... 33 0.26
sp|O84709|ENGA_CHLTR GTP-binding protein engA 32 0.45
sp|P34504|YMV2_CAEEL Hypothetical protein K04H4.2 precursor 30 2.2
sp|O75077|ADA23_HUMAN ADAM 23 precursor (A disintegrin and ... 29 2.9
sp|P40987|CIN1_YEAST Protein CIN1 29 2.9
sp|P10969|AGI3_WHEAT Agglutinin isolectin 3 precursor (WGA3) 29 2.9
sp|P18247|POLG_PVYN Genome polyprotein [Contains: P1 protei... 29 2.9
sp|P98133|FBN1_BOVIN Fibrillin-1 precursor (MP340) 29 3.8
sp|Q9Y620|RA54B_HUMAN DNA repair and recombination protein ... 29 3.8
>sp|P97776|ADA18_RAT ADAM 18 (A disintegrin and metalloproteinase domain 18)
(Transmembrane metalloproteinase-like, disintegrin-like,
and cysteine-rich protein III) (tMDC III)
Length = 445
Score = 33.9 bits (76), Expect = 0.12
Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 21/128 (16%)
Frame = +1
Query: 22 CFSGVCLSMESMKFCSKETKVQNKVAERDR-------YRENNNCFSR------------Y 144
CF V E++ C + ++D +R N N S
Sbjct: 240 CFEKVNSQRENLANCDSKNSYSLPCGQKDVLCGKLACFRPNKNYKSSTQSVLYSYVHGSV 299
Query: 145 CIPIKPNREMKFCAKDSLLAVFLGSGDICNEDKQCHSGYCVQVSGTTKHC--SKDSRRQG 318
C+ I P M+ KD+ ++ G +C C +G C +V+ T C +K + G
Sbjct: 300 CLSIPPGLSMRSDGKDN---AYVADGTVCGPQMYCINGSCKEVNFTGNDCNAAKKCKGNG 356
Query: 319 LIAQGGPC 342
+ G C
Sbjct: 357 ICNNFGHC 364
>sp|Q9R157|ADA18_MOUSE ADAM 18 precursor (A disintegrin and metalloproteinase domain 18)
(Transmembrane metalloproteinase-like, disintegrin-like,
and cysteine-rich protein III) (tMDC III) (ADAM 27)
Length = 719
Score = 32.7 bits (73), Expect = 0.26
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +1
Query: 145 CIPIKPNREMKFCAKDSLLAVFLGSGDICNEDKQCHSGYCVQVSGTTKHC--SKDSRRQG 318
C+ + P M+ +DS ++ G +C C +G C +V+ T C +K + G
Sbjct: 574 CLSVLPGLSMRSDGRDS---AYVADGTVCGPQMYCINGTCKEVNFTGNDCNATKKCKGNG 630
Query: 319 LIAQGGPC 342
+ G C
Sbjct: 631 ICNNFGNC 638
>sp|O84709|ENGA_CHLTR GTP-binding protein engA
Length = 490
Score = 32.0 bits (71), Expect = 0.45
Identities = 18/70 (25%), Positives = 37/70 (52%)
Frame = -2
Query: 232 YKYLHFRGIQLTKNL*RKISFLYLALSEYNISRNNCYFLCIDLFQQLYFEPLFLLNKISY 53
Y ++ G++ TK++ + ++ + +E ISR + L ID QQL ++ +L+ I+
Sbjct: 276 YVFIDTAGLRKTKSIKNSVEWMSSSRTEKAISRTDICLLVIDATQQLSYQDKRILSMIAR 335
Query: 52 FPCSSKLLKN 23
+ +L N
Sbjct: 336 YKKPHVILVN 345
>sp|P34504|YMV2_CAEEL Hypothetical protein K04H4.2 precursor
Length = 967
Score = 29.6 bits (65), Expect = 2.2
Identities = 20/89 (22%), Positives = 30/89 (33%)
Frame = +1
Query: 4 CENDAQCFSGVCLSMESMKFCSKETKVQNKVAERDRYRENNNCFSRYCIPIKPNREMKFC 183
C + C +G C+ + + CS + N RD Y F K C
Sbjct: 180 CPLGSACRNGNCIPLTTSNLCS-DGSPPNNTCTRDPYSCPKGHFCT---------AQKVC 229
Query: 184 AKDSLLAVFLGSGDICNEDKQCHSGYCVQ 270
+ L +G +C D+ C G Q
Sbjct: 230 CPSTALQSSIGCSTVCTIDESCPKGMTCQ 258
>sp|O75077|ADA23_HUMAN ADAM 23 precursor (A disintegrin and metalloproteinase domain 23)
(Metalloproteinase-like, disintegrin-like, and
cysteine-rich protein 3) (MDC-3)
Length = 832
Score = 29.3 bits (64), Expect = 2.9
Identities = 28/121 (23%), Positives = 48/121 (39%)
Frame = +1
Query: 10 NDAQCFSGVCLSMESMKFCSKETKVQNKVAERDRYRENNNCFSRYCIPIKPNREMKFCAK 189
N A C G C + S F + + ++ V E D E S C P ++ C +
Sbjct: 536 NGAHCSDGPCCNNTSCLFQPRGYECRDAVNECD-ITEYCTGDSGQCPPNLHKQDGYACNQ 594
Query: 190 DSLLAVFLGSGDICNEDKQCHSGYCVQVSGTTKHCSKDSRRQGLIAQGGPCLKDSQCSLR 369
+ +G+ D QC + + +G+ K C + +G + G C KD ++
Sbjct: 595 NQGRCY---NGECKTRDNQCQYIWGTKAAGSDKFCYEKLNTEG--TEKGNCGKDGDRWIQ 649
Query: 370 C 372
C
Sbjct: 650 C 650
>sp|P40987|CIN1_YEAST Protein CIN1
Length = 1014
Score = 29.3 bits (64), Expect = 2.9
Identities = 26/86 (30%), Positives = 44/86 (51%)
Frame = -2
Query: 352 NLLNMDHLEQLSLDAVNLYYNVW*CQTLVHSNQNDIVCLHYKYLHFRGIQLTKNL*RKIS 173
NLL HL + L N+ YN+ L+ S + L + L+ G +T+N +I
Sbjct: 476 NLLENLHLTTMKL---NIDYNL---VPLIKSKLSSPALLQ-EVLNKAGSSVTQNC--QIL 526
Query: 172 FLYLALSEYNISRNNCYFLCIDLFQQ 95
+LYL L E +++ +CID++Q+
Sbjct: 527 YLYLKLFENDVNCPKISEICIDIYQK 552
>sp|P10969|AGI3_WHEAT Agglutinin isolectin 3 precursor (WGA3)
Length = 186
Score = 29.3 bits (64), Expect = 2.9
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 241 KQCHSGYCVQVSGTTKHCSKDSRRQGLIAQGGPCLKDSQC 360
K C + +C G HC + G QGGPC D +C
Sbjct: 53 KTCPNNHCCSQYG---HCGFGAEYCGAGCQGGPCRADIKC 89
>sp|P18247|POLG_PVYN Genome polyprotein [Contains: P1 proteinase (N-terminal protein);
Helper component proteinase (HC-pro); Protein P3; 6 kDa
protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6
kDa protein 2 (6K2); Viral genome-linked protein (VPg);
Nuclear inclusion protein A (NI-a) (NIa) (NIa-pro) (49
kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B
(NI-b) (NIb) (RNA-directed RNA polymerase); Coat protein
(CP)]
Length = 3063
Score = 29.3 bits (64), Expect = 2.9
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = -2
Query: 232 YKYLHFRGIQLTKNL*RKISFLYLALSEYNISRNNCYFLCIDLFQ 98
Y H R + KNL + ++F+ L + ++ R++C F ++ F+
Sbjct: 1100 YDVRHQRSTPVVKNLEQVVAFMALVIMVFDAERSDCVFKTLNKFK 1144
>sp|P98133|FBN1_BOVIN Fibrillin-1 precursor (MP340)
Length = 2871
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +1
Query: 223 DICNEDKQCHSGYCVQVSGTTK-HCSKDSRRQGLIAQGGPCLKDSQCSL 366
D C E C G C+ G+ + C G I QG C+ +CS+
Sbjct: 2129 DECKEPDVCKHGQCINTDGSYRCECP-----FGYILQGNECVDTDECSV 2172
>sp|Q9Y620|RA54B_HUMAN DNA repair and recombination protein RAD54B (RAD54 homolog B)
Length = 910
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 133 NNCYFLCIDLFQQLYFEPLFLLNKISYFPCSSKLLKNIEHRFHK 2
N+ + +CI ++L P L N I CSS KN E +K
Sbjct: 578 NSPHLICIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYK 621
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,644,668
Number of Sequences: 369166
Number of extensions: 848392
Number of successful extensions: 2440
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2436
length of database: 68,354,980
effective HSP length: 94
effective length of database: 50,989,890
effective search space used: 1682666370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)