Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_K12
(316 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 189 2e-48
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 189 2e-48
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 189 2e-48
sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alp... 189 2e-48
sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic fo... 188 4e-48
sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha) 186 1e-47
sp|Q26487|EF1A_SPOFR Elongation factor 1-alpha (EF-1-alpha) 186 1e-47
sp|P84316|EF1A_HELZE Elongation factor 1-alpha (EF-1-alpha)... 186 1e-47
sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha)... 186 2e-47
sp|P02993|EF1A_ARTSA Elongation factor 1-alpha (EF-1-alpha) 184 7e-47
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 189 bits (480), Expect = 2e-48
Identities = 85/104 (81%), Positives = 97/104 (93%)
Frame = +3
Query: 3 AAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGS 182
AAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +
Sbjct: 117 AAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVST 176
Query: 183 YLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 314
Y+KK+GY PD VAFVPISGWNGDNM+E S+NMPW+KGW++TRK+
Sbjct: 177 YIKKIGYNPDTVAFVPISGWNGDNMLEPSSNMPWFKGWKVTRKD 220
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 189 bits (479), Expect = 2e-48
Identities = 85/104 (81%), Positives = 96/104 (92%)
Frame = +3
Query: 3 AAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGS 182
AAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +
Sbjct: 117 AAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVST 176
Query: 183 YLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 314
Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW++TRK+
Sbjct: 177 YIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKD 220
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 189 bits (479), Expect = 2e-48
Identities = 85/104 (81%), Positives = 96/104 (92%)
Frame = +3
Query: 3 AAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGS 182
AAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +
Sbjct: 117 AAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVST 176
Query: 183 YLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 314
Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW++TRK+
Sbjct: 177 YIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKD 220
>sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 189 bits (479), Expect = 2e-48
Identities = 85/104 (81%), Positives = 96/104 (92%)
Frame = +3
Query: 3 AAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGS 182
AAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI KEV +
Sbjct: 117 AAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVST 176
Query: 183 YLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 314
Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW++TRK+
Sbjct: 177 YIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKD 220
>sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic form (EF-1-alpha-S)
Length = 462
Score = 188 bits (477), Expect = 4e-48
Identities = 85/103 (82%), Positives = 95/103 (92%)
Frame = +3
Query: 3 AAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGS 182
AAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVG+NKMDSTEPP+S KR+EEI KEV +
Sbjct: 117 AAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGINKMDSTEPPYSQKRYEEIVKEVST 176
Query: 183 YLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 311
Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW+ITRK
Sbjct: 177 YIKKIGYNPDTVAFVPISGWNGDNMLEPSPNMPWFKGWKITRK 219
>sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 186 bits (473), Expect = 1e-47
Identities = 85/103 (82%), Positives = 96/103 (93%)
Frame = +3
Query: 3 AAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGS 182
AAGTGEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKMDSTEPP+S+ RFEEIKKEV S
Sbjct: 117 AAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 176
Query: 183 YLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 311
Y+KK+GY P AVAFVPISGW+GDNM+E ST MPW+KGW++ RK
Sbjct: 177 YIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERK 219
>sp|Q26487|EF1A_SPOFR Elongation factor 1-alpha (EF-1-alpha)
Length = 413
Score = 186 bits (472), Expect = 1e-47
Identities = 85/103 (82%), Positives = 95/103 (92%)
Frame = +3
Query: 3 AAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGS 182
AAGTGEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKMDSTEPP+S+ RFEEIKKEV S
Sbjct: 103 AAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSS 162
Query: 183 YLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 311
Y+KK+GY P AVAFVPISGW+GDNM+E ST MPW+KGW + RK
Sbjct: 163 YIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERK 205
>sp|P84316|EF1A_HELZE Elongation factor 1-alpha (EF-1-alpha)
sp|P84315|EF1A_HELVI Elongation factor 1-alpha (EF-1-alpha)
sp|P84318|EF1A_HELGL Elongation factor 1-alpha (EF-1-alpha)
sp|P84320|EF1A_HELDI Elongation factor 1-alpha (EF-1-alpha)
sp|P84317|EF1A_HELAM Elongation factor 1-alpha (EF-1-alpha)
sp|P84319|EF1A_HELAL Elongation factor 1-alpha (EF-1-alpha)
sp|P84322|EF1A_ANIIF Elongation factor 1-alpha (EF-1-alpha)
sp|P84321|EF1A_ADIBE Elongation factor 1-alpha (EF-1-alpha)
Length = 413
Score = 186 bits (472), Expect = 1e-47
Identities = 85/103 (82%), Positives = 95/103 (92%)
Frame = +3
Query: 3 AAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGS 182
AAGTGEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKMDSTEPP+S+ RFEEIKKEV S
Sbjct: 103 AAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSS 162
Query: 183 YLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 311
Y+KK+GY P AVAFVPISGW+GDNM+E ST MPW+KGW + RK
Sbjct: 163 YIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERK 205
>sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha) (50 kDa female-specific
protein)
Length = 463
Score = 186 bits (471), Expect = 2e-47
Identities = 84/103 (81%), Positives = 97/103 (94%)
Frame = +3
Query: 3 AAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGS 182
AAGTGEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKMDS+EPP+S+ R+EEIKKEV S
Sbjct: 117 AAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSSEPPYSEARYEEIKKEVSS 176
Query: 183 YLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 311
Y+KK+GY P AVAFVPISGW+GDNM+E STNMPW+KGW++ RK
Sbjct: 177 YIKKIGYNPAAVAFVPISGWHGDNMLEPSTNMPWFKGWKVERK 219
>sp|P02993|EF1A_ARTSA Elongation factor 1-alpha (EF-1-alpha)
Length = 462
Score = 184 bits (466), Expect = 7e-47
Identities = 85/103 (82%), Positives = 93/103 (90%)
Frame = +3
Query: 3 AAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKKEVGS 182
AAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPPFS+ RFEEIKKEV +
Sbjct: 117 AAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPFSEARFEEIKKEVSA 176
Query: 183 YLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 311
Y+KK+GY P AVAFVPISGW+GDNM+E S +PWYKGW I RK
Sbjct: 177 YIKKIGYNPAAVAFVPISGWHGDNMLEASDRLPWYKGWNIERK 219
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,797,181
Number of Sequences: 369166
Number of extensions: 730109
Number of successful extensions: 2706
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2609
length of database: 68,354,980
effective HSP length: 73
effective length of database: 54,869,325
effective search space used: 1700949075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)