Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_K06
(867 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53115|INO80_YEAST Putative DNA helicase INO80 (Inositol... 37 0.071
sp|P21538|REB1_YEAST DNA-binding protein REB1 (QBP) 36 0.12
sp|P97500|MYT1L_MOUSE Myelin transcription factor 1-like pr... 36 0.12
sp|P43612|SA155_YEAST SIT4-associating protein SAP155 36 0.16
sp|P70475|MYT1L_RAT Myelin transcription factor 1-like prot... 35 0.21
sp|P25980|UBF1B_XENLA Nucleolar transcription factor 1-B (U... 35 0.27
sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II largest... 35 0.27
sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic... 35 0.27
sp|P23745|ABRA_PLAFG 101 kDa malaria antigen (P101) (Acidic... 35 0.27
sp|P39687|AN32A_HUMAN Acidic leucine-rich nuclear phosphopr... 35 0.35
>sp|P53115|INO80_YEAST Putative DNA helicase INO80 (Inositol requiering protein 80)
Length = 1489
Score = 37.0 bits (84), Expect = 0.071
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 195 DDVNNLEDGECNDDNEAGEEENIDGNNCNSVLPENSNETEEENVDEQCSESMDLCDKD 368
+D NN ED + ++DNE + + D N N +N +E E DE+ E DL ++D
Sbjct: 217 EDGNNGEDEDNDNDNENNNDNDNDNENENDNDSDNDDEEENGEEDEEEEEIEDLDEED 274
Score = 34.3 bits (77), Expect = 0.46
Identities = 20/73 (27%), Positives = 39/73 (53%)
Frame = +3
Query: 216 DGECNDDNEAGEEENIDGNNCNSVLPENSNETEEENVDEQCSESMDLCDKDGGYNNNQAV 395
+G+ N+D GE+E+ D +N EN+N+ + +N +E ++S D D N +
Sbjct: 212 NGDENEDGNNGEDEDNDNDN------ENNNDNDNDNENENDNDS----DNDDEEENGEED 261
Query: 396 EEFCQDPDINQNE 434
EE + D+++ +
Sbjct: 262 EEEEEIEDLDEED 274
Score = 33.5 bits (75), Expect = 0.78
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +3
Query: 195 DDVNNLEDGECNDDNEAGEEENIDGNNCNSVLPENSNETEEE----NVDEQCSESMDLCD 362
+D +N D E N+DN+ E D ++ N EN E EEE ++DE+ + + D
Sbjct: 223 EDEDNDNDNENNNDNDNDNENENDNDSDNDDEEENGEEDEEEEEIEDLDEEDFAAFEEQD 282
Query: 363 KDGGYNNNQAVEE 401
+ + N VE+
Sbjct: 283 DNDDEDFNPDVEK 295
>sp|P21538|REB1_YEAST DNA-binding protein REB1 (QBP)
Length = 810
Score = 36.2 bits (82), Expect = 0.12
Identities = 25/87 (28%), Positives = 42/87 (48%)
Frame = +3
Query: 180 ELATTDDVNNLEDGECNDDNEAGEEENIDGNNCNSVLPENSNETEEENVDEQCSESMDLC 359
E ++ DVNN +D N+DN + ENI N N E+S+ + N +EQ + MD
Sbjct: 53 ESSSDVDVNNNDDSNRNEDNN-DDSENISALNAN----ESSSNVDHANSNEQHNAVMDWY 107
Query: 360 DKDGGYNNNQAVEEFCQDPDINQNESS 440
+ +N ++ + N N+S+
Sbjct: 108 LRQTAHNQQDDEDDENNNNTDNGNDSN 134
>sp|P97500|MYT1L_MOUSE Myelin transcription factor 1-like protein (MyT1L protein)
(Postmitotic neural gene 1 protein) (Zinc finger protein
Png-1) (Neural zinc finger factor 1) (NZF-1)
Length = 1187
Score = 36.2 bits (82), Expect = 0.12
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 213 EDGECNDDNEAG---EEENIDGNNCNSVLPENSNETEEENVDEQCSESMDLCDKDGGYNN 383
ED E +DD+E G EEE D + E E EEEN D Q S + + D D NN
Sbjct: 137 EDDEDDDDDEDGDDVEEEEEDDDE-----EEEEEEEEEENEDHQMSCTRIMQDTDKDDNN 191
Query: 384 NQAVEEF 404
N + +
Sbjct: 192 NDEYDNY 198
>sp|P43612|SA155_YEAST SIT4-associating protein SAP155
Length = 1000
Score = 35.8 bits (81), Expect = 0.16
Identities = 23/89 (25%), Positives = 40/89 (44%)
Frame = +3
Query: 174 RTELATTDDVNNLEDGECNDDNEAGEEENIDGNNCNSVLPENSNETEEENVDEQCSESMD 353
+ + ATT D+NNL D + E++ +D ++ V E+ E EEE D+ S +
Sbjct: 196 KIKTATTVDLNNLIDYQ--------EQQQLDDSSQEDVYVESDTEQEEEKEDDNNSNNKK 247
Query: 354 LCDKDGGYNNNQAVEEFCQDPDINQNESS 440
+ N + D D N+++ S
Sbjct: 248 RRKRGSSSFGNDDINNNDDDDDANEDDES 276
>sp|P70475|MYT1L_RAT Myelin transcription factor 1-like protein (MyT1L protein) (Neural
zinc finger factor 1) (NZF-1)
Length = 1187
Score = 35.4 bits (80), Expect = 0.21
Identities = 25/75 (33%), Positives = 34/75 (45%)
Frame = +3
Query: 180 ELATTDDVNNLEDGECNDDNEAGEEENIDGNNCNSVLPENSNETEEENVDEQCSESMDLC 359
E+ DD ED E +DD + EEE D + E E EEEN D Q S + +
Sbjct: 133 EIEEEDD----EDDEDDDDGDDVEEEEDDDDE-----EEEEEEEEEENEDHQMSCTRIMQ 183
Query: 360 DKDGGYNNNQAVEEF 404
D + NNN + +
Sbjct: 184 DPEKDDNNNDEYDNY 198
>sp|P25980|UBF1B_XENLA Nucleolar transcription factor 1-B (Upstream binding factor 1-B)
(UBF-1-B) (xUBF-2)
Length = 701
Score = 35.0 bits (79), Expect = 0.27
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +3
Query: 195 DDVNNLEDGECNDDNEAGEEENIDGNNCNSVLPENS-----NETEEENVDEQCSESMDLC 359
D+ + E+ + +DD+E E+ + DG++ +S E+S NE EE+ D+ D
Sbjct: 620 DEDDEDEEDDDDDDDEDKEDSSEDGDSSDSSSDEDSEEGEENEDEEDEEDDDEDNEEDDD 679
Query: 360 DKDGGYNNNQAVEEFCQDPDIN 425
D + G +++ + D D N
Sbjct: 680 DNESGSSSSSSSSADSSDSDSN 701
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II largest subunit
Length = 2452
Score = 35.0 bits (79), Expect = 0.27
Identities = 18/64 (28%), Positives = 36/64 (56%)
Frame = +3
Query: 201 VNNLEDGECNDDNEAGEEENIDGNNCNSVLPENSNETEEENVDEQCSESMDLCDKDGGYN 380
VNN D +DD E EE+ + G+ ++V P+N+ + + +N + + + + + K G N
Sbjct: 1741 VNNNNDNNDDDDEEEEEEDFLFGD--HNVSPKNTKDGKNKNTNNKSNNNENKNKKSGNNN 1798
Query: 381 NNQA 392
+N +
Sbjct: 1799 SNNS 1802
>sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 743
Score = 35.0 bits (79), Expect = 0.27
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 204 NNLEDGECNDDNEAGEEENI-DGNNCNSVLPENSNETEEENVDEQCSESMDLCDKDGGYN 380
+N + E ND+++ +EE+ D + N E++N+ E+ N DE ++ D D++ N
Sbjct: 219 DNQKYQEVNDEDDVNDEEDTNDDEDTND--EEDTNDDEDTNDDEDTNDEEDTNDEEDHEN 276
Query: 381 NNQAVEE 401
NN E
Sbjct: 277 NNATAYE 283
>sp|P23745|ABRA_PLAFG 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 600
Score = 35.0 bits (79), Expect = 0.27
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 204 NNLEDGECNDDNEAGEEENI-DGNNCNSVLPENSNETEEENVDEQCSESMDLCDKDGGYN 380
+N + E ND+++ +EE+ D + N E++N+ E+ N DE ++ D D++ N
Sbjct: 136 DNQKYQEVNDEDDVNDEEDTNDDEDTND--EEDTNDDEDTNDDEDTNDEEDTNDEEDHEN 193
Query: 381 NNQAVEE 401
NN E
Sbjct: 194 NNATAYE 200
>sp|P39687|AN32A_HUMAN Acidic leucine-rich nuclear phosphoprotein 32 family member A
(Potent heat-stable protein phosphatase 2A inhibitor
I1PP2A) (Acidic nuclear phosphoprotein pp32) (Cerebellar
leucine-rich acidic nuclear protein) (HLA-DR-associated
protein I) (PHAPI)
Length = 249
Score = 34.7 bits (78), Expect = 0.35
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = +3
Query: 195 DDVNNLEDGECNDDNEAGEEENIDGNNCNSVLPENSNETEEENVDEQCSESMDLCDKDGG 374
+D +ED E D+ E GEEE++ G N E ++E +E+ E ++ G
Sbjct: 181 EDAQVVEDEEDEDEEEEGEEEDVSGEEEEDEEGYNDGEVDDEEDEEELGE------EERG 234
Query: 375 YNNNQAVEEFCQDPD 419
+ E+ +D D
Sbjct: 235 QKRKREPEDEGEDDD 249
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,972,263
Number of Sequences: 369166
Number of extensions: 1916016
Number of successful extensions: 7939
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7493
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)