Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_K03
(835 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P37879|SYK_CRIGR Lysyl-tRNA synthetase (Lysine--tRNA lig... 374 e-103
sp|Q99MN1|SYK_MOUSE Lysyl-tRNA synthetase (Lysine--tRNA lig... 374 e-103
sp|Q15046|SYK_HUMAN Lysyl-tRNA synthetase (Lysine--tRNA lig... 372 e-103
sp|Q22099|SYK_CAEEL Lysyl-tRNA synthetase (Lysine--tRNA lig... 372 e-103
sp|Q6F2U9|SYK_ORYSA Lysyl-tRNA synthetase (Lysine--tRNA lig... 355 7e-98
sp|Q9ZPI1|SYK_ARATH Lysyl-tRNA synthetase (Lysine--tRNA lig... 342 6e-94
sp|P15180|SYKC_YEAST Lysyl-tRNA synthetase, cytoplasmic (Ly... 317 2e-86
sp|Q43776|SYK_LYCES Lysyl-tRNA synthetase (Lysine--tRNA lig... 311 2e-84
sp|O67258|SYK_AQUAE Lysyl-tRNA synthetase (Lysine--tRNA lig... 236 6e-62
sp|Q9RXE1|SYK_DEIRA Lysyl-tRNA synthetase (Lysine--tRNA lig... 232 8e-61
>sp|P37879|SYK_CRIGR Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 597
Score = 374 bits (961), Expect = e-103
Identities = 179/259 (69%), Positives = 213/259 (82%), Gaps = 3/259 (1%)
Frame = +3
Query: 15 IGKQFRNESVDLTHNPEFTTCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG 194
IG+QFRNE +DLTHNPEFTTCEFYMA+ADY DL+ +TE +LS +VK + G Y + Y+ DG
Sbjct: 318 IGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMLSGMVKSITGSYKITYHPDG 377
Query: 195 ---KTYEIDFKPPYQRIDMMTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAP 365
+ YEIDF PP++RI M+ LE+AL +KLP + TEE+R ILD IC VEC P
Sbjct: 378 PEGEAYEIDFTPPFRRISMVEELEKALGVKLPETSLFETEETRKILDDICVAKAVECPPP 437
Query: 366 RTTARLLDKLVGEYLEEKCINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCN 545
RTTARLLDKLVGE+LE CINPTFI +HP+IMSPLAKWHR+ GLTERFELFVMKKE+CN
Sbjct: 438 RTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICN 497
Query: 546 AYTELNDPIVQRERFEQQAKDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRLTMF 725
AYTELNDP+ QR+ FE+QAK KAAGD+EAMF+DE F A+E G+PPTAGWG+GIDR+TMF
Sbjct: 498 AYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVTMF 557
Query: 726 LTDTDNIKEVLCFPAMKPE 782
LTD++NIKEVL FPAMKPE
Sbjct: 558 LTDSNNIKEVLLFPAMKPE 576
>sp|Q99MN1|SYK_MOUSE Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 595
Score = 374 bits (960), Expect = e-103
Identities = 178/259 (68%), Positives = 213/259 (82%), Gaps = 3/259 (1%)
Frame = +3
Query: 15 IGKQFRNESVDLTHNPEFTTCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG 194
IG+QFRNE +DLTHNPEFTTCEFYMA+ADY DL+ +TE +LS +VK + G Y + Y+ DG
Sbjct: 316 IGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMLSGMVKSITGSYKITYHPDG 375
Query: 195 ---KTYEIDFKPPYQRIDMMTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAP 365
+ YE+DF PP++RI M+ LE+AL +KLP + TEE+R ILD IC VEC P
Sbjct: 376 PEGQAYEVDFTPPFRRISMVEELEKALGVKLPETSLFETEETRKILDDICVAKAVECPPP 435
Query: 366 RTTARLLDKLVGEYLEEKCINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCN 545
RTTARLLDKLVGE+LE CI+PTFI +HP+IMSPLAKWHR+ GLTERFELFVMKKE+CN
Sbjct: 436 RTTARLLDKLVGEFLEVTCISPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICN 495
Query: 546 AYTELNDPIVQRERFEQQAKDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRLTMF 725
AYTELNDP+ QR+ FE+QAK KAAGD+EAMF+DE F A+E G+PPTAGWG+GIDRLTMF
Sbjct: 496 AYTELNDPVRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRLTMF 555
Query: 726 LTDTDNIKEVLCFPAMKPE 782
LTD++NIKEVL FPAMKPE
Sbjct: 556 LTDSNNIKEVLLFPAMKPE 574
>sp|Q15046|SYK_HUMAN Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 597
Score = 372 bits (954), Expect = e-103
Identities = 177/259 (68%), Positives = 212/259 (81%), Gaps = 3/259 (1%)
Frame = +3
Query: 15 IGKQFRNESVDLTHNPEFTTCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG 194
IG+QFRNE +DLTHNPEFTTCEFYMA+ADY DL+ +TE ++S +VK + G Y V Y+ DG
Sbjct: 318 IGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDG 377
Query: 195 ---KTYEIDFKPPYQRIDMMTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAP 365
+ Y++DF PP++RI+M+ LE+AL MKLP TEE+R ILD IC VEC P
Sbjct: 378 PEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILDDICVAKAVECPPP 437
Query: 366 RTTARLLDKLVGEYLEEKCINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCN 545
RTTARLLDKLVGE+LE CINPTFI +HP+IMSPLAKWHR+ GLTERFELFVMKKE+CN
Sbjct: 438 RTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICN 497
Query: 546 AYTELNDPIVQRERFEQQAKDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRLTMF 725
AYTELNDP+ QR+ FE+QAK KAAGD+EAMF+DE F A+E G+PPTAGWG+GIDR+ MF
Sbjct: 498 AYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMF 557
Query: 726 LTDTDNIKEVLCFPAMKPE 782
LTD++NIKEVL FPAMKPE
Sbjct: 558 LTDSNNIKEVLLFPAMKPE 576
>sp|Q22099|SYK_CAEEL Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 572
Score = 372 bits (954), Expect = e-103
Identities = 173/265 (65%), Positives = 214/265 (80%), Gaps = 4/265 (1%)
Frame = +3
Query: 15 IGKQFRNESVDLTHNPEFTTCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG 194
+G+ FRNE +DLTHNPEFTTCEFYMA+ADY D+I +TEDLLS++V + G Y ++Y+ +G
Sbjct: 297 VGRLFRNEGIDLTHNPEFTTCEFYMAYADYEDVIQLTEDLLSSMVMSIKGTYKIEYHPNG 356
Query: 195 KT----YEIDFKPPYQRIDMMTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSA 362
YE+DF PP++R+ M GL E L LP P+ L TEE+R + DK+C DNNV+CSA
Sbjct: 357 PNTEPVYEVDFTPPFKRVHMYDGLAEKLGATLPDPSTLHTEEAREVFDKLCRDNNVDCSA 416
Query: 363 PRTTARLLDKLVGEYLEEKCINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELC 542
PRTTARLLDKLVGEYLE I+PTF++ HP+IMSPLAKWHR++PGLTERFELF + +E+
Sbjct: 417 PRTTARLLDKLVGEYLESTFISPTFLIGHPQIMSPLAKWHRSIPGLTERFELFAVTREIA 476
Query: 543 NAYTELNDPIVQRERFEQQAKDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRLTM 722
NAYTELNDPI QR+RFEQQAKDK AGD+EA +DETF A+E G+PPT GWG+GIDRL+M
Sbjct: 477 NAYTELNDPITQRQRFEQQAKDKDAGDDEAQMIDETFCNALEYGLPPTGGWGMGIDRLSM 536
Query: 723 FLTDTDNIKEVLCFPAMKPEFGIKK 797
LTD +NIKEVL FPAM+PE G +K
Sbjct: 537 ILTDNNNIKEVLLFPAMRPEDGTEK 561
>sp|Q6F2U9|SYK_ORYSA Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 602
Score = 355 bits (912), Expect = 7e-98
Identities = 170/259 (65%), Positives = 207/259 (79%), Gaps = 3/259 (1%)
Frame = +3
Query: 15 IGKQFRNESVDLTHNPEFTTCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG 194
IGKQFRNE +DLTHNPEFTTCEFYMA+ADY DLI +TE +LS +VKEL G Y +KY+ +G
Sbjct: 345 IGKQFRNEGIDLTHNPEFTTCEFYMAYADYNDLIELTETMLSGMVKELTGGYKIKYHANG 404
Query: 195 ---KTYEIDFKPPYQRIDMMTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAP 365
EIDF PP+++IDM+ LE K+ +P +L ++E+ L CA +V+C P
Sbjct: 405 VEKPPIEIDFTPPFRKIDMIEELEAMAKLNIP--KDLSSDEANKYLIDACAKYDVKCPPP 462
Query: 366 RTTARLLDKLVGEYLEEKCINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCN 545
+TT RLLDKLVG +LEE C+NPTFI+NHPEIMSPLAKWHR+ PGLTERFELFV K E+CN
Sbjct: 463 QTTTRLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRSRPGLTERFELFVNKHEVCN 522
Query: 546 AYTELNDPIVQRERFEQQAKDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRLTMF 725
AYTELNDP+VQR+RFE+Q KD+ +GD+EAM +DETF A+E G+PPT GWGLGIDRLTM
Sbjct: 523 AYTELNDPVVQRQRFEEQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLTML 582
Query: 726 LTDTDNIKEVLCFPAMKPE 782
LTD+ NIKEVL FPAMKP+
Sbjct: 583 LTDSQNIKEVLLFPAMKPQ 601
>sp|Q9ZPI1|SYK_ARATH Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 626
Score = 342 bits (878), Expect = 6e-94
Identities = 167/258 (64%), Positives = 203/258 (78%), Gaps = 3/258 (1%)
Frame = +3
Query: 15 IGKQFRNESVDLTHNPEFTTCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG 194
IGKQFRNE +DLTHNPEFTTCEFYMAFADY DL+ +TE +LS +VKEL G Y +KYN +G
Sbjct: 354 IGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMEMTEVMLSGMVKELTGGYKIKYNANG 413
Query: 195 ---KTYEIDFKPPYQRIDMMTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAP 365
EIDF PP++RI+M+ LE+ K+ +P +L +EE+ L CA +V+C P
Sbjct: 414 YDKDPIEIDFTPPFRRIEMIGELEKVAKLNIP--KDLASEEANKYLIDACARFDVKCPPP 471
Query: 366 RTTARLLDKLVGEYLEEKCINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCN 545
+TTARLLDKLVGE+LE C+NPTFI+N PEIMSPLAKWHR+ GLTERFELF+ K ELCN
Sbjct: 472 QTTARLLDKLVGEFLEPTCVNPTFIINQPEIMSPLAKWHRSKSGLTERFELFINKHELCN 531
Query: 546 AYTELNDPIVQRERFEQQAKDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRLTMF 725
AYTELNDP+VQR+RF Q KD+ +GD+EAM +DETF A+E G+ PT GWGLGIDRL+M
Sbjct: 532 AYTELNDPVVQRQRFADQLKDRQSGDDEAMALDETFCNALEYGLAPTGGWGLGIDRLSML 591
Query: 726 LTDTDNIKEVLCFPAMKP 779
LTD+ NIKEVL FPAM+P
Sbjct: 592 LTDSLNIKEVLFFPAMRP 609
>sp|P15180|SYKC_YEAST Lysyl-tRNA synthetase, cytoplasmic (Lysine--tRNA ligase) (LysRS)
Length = 591
Score = 317 bits (813), Expect = 2e-86
Identities = 152/260 (58%), Positives = 193/260 (74%), Gaps = 4/260 (1%)
Frame = +3
Query: 15 IGKQFRNESVDLTHNPEFTTCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKD- 191
IG+QFRNE +D+THNPEFTTCEFY A+AD +DL+ +TE + S +VKE+ G YI+KY+ D
Sbjct: 321 IGRQFRNEGIDMTHNPEFTTCEFYQAYADVYDLMDMTELMFSEMVKEITGSYIIKYHPDP 380
Query: 192 ---GKTYEIDFKPPYQRIDMMTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSA 362
K E++F P++RI+M+ LE+ +K P +L T E+ L KI DN +EC
Sbjct: 381 ADPAKELELNFSRPWKRINMIEELEKVFNVKFPSGDQLHTAETGEFLKKILVDNKLECPP 440
Query: 363 PRTTARLLDKLVGEYLEEKCINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELC 542
P T AR+LDKLVGE LE+ CINPTFI HP++MSPLAK+ R+ PGL ERFE+FV KE+C
Sbjct: 441 PLTNARMLDKLVGE-LEDTCINPTFIFGHPQMMSPLAKYSRDQPGLCERFEVFVATKEIC 499
Query: 543 NAYTELNDPIVQRERFEQQAKDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRLTM 722
NAYTELNDP QR RFE+QA+ K GD+EA VDETF A+E G+PPT GWG GIDRL M
Sbjct: 500 NAYTELNDPFDQRARFEEQARQKDQGDDEAQLVDETFCNALEYGLPPTGGWGCGIDRLAM 559
Query: 723 FLTDTDNIKEVLCFPAMKPE 782
FLTD++ I+EVL FP +KP+
Sbjct: 560 FLTDSNTIREVLLFPTLKPD 579
>sp|Q43776|SYK_LYCES Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 588
Score = 311 bits (796), Expect = 2e-84
Identities = 148/257 (57%), Positives = 195/257 (75%), Gaps = 3/257 (1%)
Frame = +3
Query: 15 IGKQFRNESVDLTHNPEFTTCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG 194
+GK FRNE +DLTH+PEFT CE YMA+ADY DL+ +TE LLS +VK+L G Y ++Y+ +G
Sbjct: 332 LGKHFRNEGMDLTHSPEFTMCELYMAYADYNDLMDLTEQLLSGMVKDLTGSYKIRYHANG 391
Query: 195 ---KTYEIDFKPPYQRIDMMTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAP 365
+ EIDF PP+++IDM++ LE+ + +P +L +E + L +C +V+C P
Sbjct: 392 LDNEPIEIDFTPPFRKIDMLSELEKVANISIP--RDLSSESANKHLVDVCEKFDVKCPPP 449
Query: 366 RTTARLLDKLVGEYLEEKCINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKELCN 545
TT RLLDKLVG ++E CINPTFI+NHPEIMSPLAK R+ PGLTERF LFV ++ELC+
Sbjct: 450 HTTTRLLDKLVGHFIEVNCINPTFIINHPEIMSPLAKSRRSEPGLTERFNLFVNRRELCD 509
Query: 546 AYTELNDPIVQRERFEQQAKDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRLTMF 725
AYTELNDP QRERF +Q KD+ GD+EAM +DE+F+ A+E G+PPT G G+GIDRLTM
Sbjct: 510 AYTELNDPTAQRERFAEQLKDRQLGDDEAMDLDESFITALEYGLPPTGGLGMGIDRLTML 569
Query: 726 LTDTDNIKEVLCFPAMK 776
LTD+ N+KEV+ FPAM+
Sbjct: 570 LTDSQNVKEVILFPAMR 586
>sp|O67258|SYK_AQUAE Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 597
Score = 236 bits (602), Expect = 6e-62
Identities = 125/261 (47%), Positives = 168/261 (64%), Gaps = 5/261 (1%)
Frame = +3
Query: 15 IGKQFRNESVDLTHNPEFTTCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG 194
IGK FRNESVD THNPEFT EFY A+ DY DLI TED+ L+++ G VKY +
Sbjct: 344 IGKNFRNESVDRTHNPEFTMVEFYAAYWDYHDLIKFTEDMFVYLLEKTLGTLKVKYGE-- 401
Query: 195 KTYEIDFKPPYQRIDMMTGLEEALKMKLPLPTELGTEESRLILD-----KICADNNVECS 359
+E+DF PP++++ L+E + G ++ + D K+ + +
Sbjct: 402 --WELDFSPPFKKVRYFDLLKE----------KTGKDKDFFLKDLEGLRKLAKELEIPDV 449
Query: 360 APRTTARLLDKLVGEYLEEKCINPTFIMNHPEIMSPLAKWHRNVPGLTERFELFVMKKEL 539
T A+LLDK+ + EE I PTF+++ P+I+SPLAK HR P L ERFEL + + E+
Sbjct: 450 ERMTHAKLLDKVFEKVAEEDLIQPTFVIDFPKILSPLAKTHREDPDLVERFELIIARYEV 509
Query: 540 CNAYTELNDPIVQRERFEQQAKDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRLT 719
NAYTELNDP Q+ERF +Q K+K GDEEAM +DE F+ A+E GMPPTAG G+GIDRL
Sbjct: 510 ANAYTELNDPFDQKERFLEQLKEKQMGDEEAMDMDEDFIRALEYGMPPTAGEGIGIDRLV 569
Query: 720 MFLTDTDNIKEVLCFPAMKPE 782
M L +TD+I+EV+ FP +KPE
Sbjct: 570 MILANTDSIREVILFPQLKPE 590
>sp|Q9RXE1|SYK_DEIRA Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 525
Score = 232 bits (592), Expect = 8e-61
Identities = 129/261 (49%), Positives = 168/261 (64%), Gaps = 3/261 (1%)
Frame = +3
Query: 15 IGKQFRNESVDLTHNPEFTTCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG 194
IG+ +RNE +D THNPEFT E Y A+ADY D+ + EDLLS L KE+ G Y +Y G
Sbjct: 263 IGRVYRNEGIDRTHNPEFTMLELYWAYADYSDIAKLVEDLLSGLAKEVHGSYQFEYQ--G 320
Query: 195 KTYEIDFKPPYQRIDMMTGLEEALKMKLPLPTELGTEESRLILDKICA--DNNVECSAPR 368
KT +DF PP+ R+D + GL E + G + L LD++ A D
Sbjct: 321 KT--LDFTPPFARVDYLGGLREHVP---------GLDFDPLDLDRLRAFCDERFPQWKGV 369
Query: 369 TTARLLDKLVGEYLEEKCINPTFIMNHPEIMSPLAKWHRNVP-GLTERFELFVMKKELCN 545
+ +LLDKL GE++E NPTF+M+HP ++SPLAK HR+ P +TERFE+F EL N
Sbjct: 370 PSYKLLDKLFGEFVEPLLSNPTFVMDHPAVISPLAKKHRSRPEAVTERFEVFCSGFELAN 429
Query: 546 AYTELNDPIVQRERFEQQAKDKAAGDEEAMFVDETFLEAMELGMPPTAGWGLGIDRLTMF 725
A++ELND QRERFE Q +AAGD+EA DE FL A+E GMPP G G+GIDRL M
Sbjct: 430 AFSELNDAFDQRERFEAQTARQAAGDDEAHPQDEDFLLALEYGMPPAGGLGIGIDRLAML 489
Query: 726 LTDTDNIKEVLCFPAMKPEFG 788
LTD+D+I++VL FP ++PE G
Sbjct: 490 LTDSDSIRDVLLFPLLRPEGG 510
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,978,116
Number of Sequences: 369166
Number of extensions: 2137717
Number of successful extensions: 6539
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6344
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8100769320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)