Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_J15
(555 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O74777|MIS3_SCHPO Ribosomal RNA assembly protein mis3 55 9e-08
sp|Q57885|Y443_METJA Hypothetical protein MJ0443 54 3e-07
sp|Q82570|RRP2_IAFOM RNA-directed RNA polymerase subunit P2... 32 1.0
sp|Q8K9P0|BIOA_BUCAP Adenosylmethionine-8-amino-7-oxononano... 31 2.3
sp|Q5PAG8|SYE2_ANAMM Glutamyl-tRNA synthetase 2 (Glutamate-... 30 4.0
sp|P26538|VL2_HPV58 Minor capsid protein L2 30 5.2
sp|O34204|TOP1_FERIS DNA topoisomerase I (Omega-protein) (R... 30 5.2
sp|P13175|RRP2_IAZI1 RNA-directed RNA polymerase subunit P2... 30 5.2
sp|P13172|RRP2_IARUD RNA-directed RNA polymerase subunit P2... 30 5.2
sp|P38308|YB53_YEAST Hypothetical 104.5 kDa protein in CDC4... 29 6.8
>sp|O74777|MIS3_SCHPO Ribosomal RNA assembly protein mis3
Length = 327
Score = 55.5 bits (132), Expect = 9e-08
Identities = 39/144 (27%), Positives = 66/144 (45%)
Frame = +2
Query: 74 PVSRLKPLKEKWDDIVKILVKELYLQCKADPTKRPLTVYLRSPSNDEVKLQKGIDFLNAF 253
P R K L+E W + + L K + C D + +TV + D + D +
Sbjct: 59 PKYREKYLREVWPHVTRALDK-FGITCVLDLVEGSMTVKTTRKTFDPYSILDARDLIKLL 117
Query: 254 SKGFDFIDCVSLIRMDGLYIRTMYIKDITRTIKGDHFTRAVGRMCGANGIMRKKIENATR 433
++ F V +++ DG+ + I +I R + F + R+ G NG K +E T+
Sbjct: 118 ARSVPFPQAVKIMQ-DGVACDIIKIGNILRN--KERFVKRRQRLIGTNGQTLKALELLTQ 174
Query: 434 CRIVINETTVHIMGTYRGIDAAHR 505
C I++ TTV +MG Y+G+ R
Sbjct: 175 CYILVQGTTVAVMGGYKGLKEVRR 198
>sp|Q57885|Y443_METJA Hypothetical protein MJ0443
Length = 227
Score = 53.9 bits (128), Expect = 3e-07
Identities = 43/166 (25%), Positives = 76/166 (45%)
Frame = +2
Query: 35 NIFDNLKTRNIKIPVSRLKPLKEKWDDIVKILVKELYLQCKADPTKRPLTVYLRSPSNDE 214
NI + +KIP R+ L K ++ K + KEL ++ + D +T+Y D
Sbjct: 9 NIGQDKSIEILKIPKDRVGVLIGKKGNVKKTIEKELGVKLEID-ADGTVTIYGTDKQKDP 67
Query: 215 VKLQKGIDFLNAFSKGFDFIDCVSLIRMDGLYIRTMYIKDITRTIKGDHFTRAVGRMCGA 394
+ + K D + A +GF+ + L+ D + + I+D + + R GR+ G
Sbjct: 68 LAVWKARDIVRAIGRGFNPEIALKLV-SDEYVLEVIDIEDYASS--DNSIRRLKGRVIGK 124
Query: 395 NGIMRKKIENATRCRIVINETTVHIMGTYRGIDAAHRKLGSLVRGA 532
G R+ IE+ T + + TV I+G + + A + L+RGA
Sbjct: 125 EGKSRRYIESLTGANVSVYGNTVAIVGEHEPVQIAKEAVEMLLRGA 170
>sp|Q82570|RRP2_IAFOM RNA-directed RNA polymerase subunit P2 (Polymerase acidic protein)
(PA)
Length = 716
Score = 32.0 bits (71), Expect = 1.0
Identities = 14/64 (21%), Positives = 33/64 (51%)
Frame = +2
Query: 47 NLKTRNIKIPVSRLKPLKEKWDDIVKILVKELYLQCKADPTKRPLTVYLRSPSNDEVKLQ 226
N + + RL+P KW+ + + ++ L+ P RP+ +Y+R+ ++K++
Sbjct: 519 NFVSMEFSLTDPRLEP--HKWEKYCVLEIGDMLLRSAIAPVSRPMFLYVRTNGTSKIKMK 576
Query: 227 KGID 238
G++
Sbjct: 577 WGME 580
>sp|Q8K9P0|BIOA_BUCAP Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
(7,8-diamino-pelargonic acid aminotransferase) (DAPA
aminotransferase)
Length = 432
Score = 30.8 bits (68), Expect = 2.3
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = +3
Query: 312 LERCILKISHALLKGITLPELLVECVGLMVLCEKKLKMQLVVES------*LMKQLFILW 473
L++ I K+SH + GIT P ++ C L+ L KKL + +S +K L W
Sbjct: 68 LKKQIRKMSHVMFGGITHPSAILLCRKLLKLTPKKLDCVFLSDSGSIAIEVAIKMLIQYW 127
Query: 474 EPI 482
E +
Sbjct: 128 EAL 130
>sp|Q5PAG8|SYE2_ANAMM Glutamyl-tRNA synthetase 2 (Glutamate--tRNA ligase 2) (GluRS 2)
Length = 466
Score = 30.0 bits (66), Expect = 4.0
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Frame = +2
Query: 191 LRSPSNDEVKLQKGIDFLNAFSKGFDFIDCVSLIRMDG--LYIRTMYIKD----ITRTIK 352
L+SP N E+K G+ S + ID + ++R +G Y+ + + D IT I+
Sbjct: 141 LKSPENREIKFTDGV--YGEISVSSEQIDDMVILRSNGHPTYLLAVVVDDHDMCITHIIR 198
Query: 353 G-DHFTRAVGRM 385
G DH T + +M
Sbjct: 199 GSDHITNTIKQM 210
>sp|P26538|VL2_HPV58 Minor capsid protein L2
Length = 472
Score = 29.6 bits (65), Expect = 5.2
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = -3
Query: 520 QRSKFSVSSINTSIGSHNMNSCFIN-YDSTTSCIFNF----FSHNTISPTHSTNSSGKVI 356
Q+ +F + S+NTS+ +++N + Y I +F SH + + T ++N S I
Sbjct: 340 QQQQFELQSLNTSVSPYSINDGLYDIYADDADTIHDFQSPLHSHTSFATTRTSNVS---I 396
Query: 355 PFNSACD 335
P N+ D
Sbjct: 397 PLNTGFD 403
>sp|O34204|TOP1_FERIS DNA topoisomerase I (Omega-protein) (Relaxing enzyme) (Untwisting
enzyme) (Swivelase)
Length = 699
Score = 29.6 bits (65), Expect = 5.2
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 2 IINFYLFLKVPNIFDNLKTRNIKIPVSRLKPLKEKWDDIVKILVKE 139
++N YL + P+I D T ++ + ++ K+ W ++VK +KE
Sbjct: 533 VVNHYLEQRFPDIVDKGFTAEMEKELDEVENGKKDWKEVVKSFLKE 578
>sp|P13175|RRP2_IAZI1 RNA-directed RNA polymerase subunit P2 (Polymerase acidic protein)
(PA)
Length = 716
Score = 29.6 bits (65), Expect = 5.2
Identities = 13/64 (20%), Positives = 32/64 (50%)
Frame = +2
Query: 47 NLKTRNIKIPVSRLKPLKEKWDDIVKILVKELYLQCKADPTKRPLTVYLRSPSNDEVKLQ 226
N + + RL+P KW+ + + ++ L+ RP+ +Y+R+ ++K++
Sbjct: 519 NFVSMEFSLTDPRLEP--HKWEKYCVLEIGDMLLRTSIGQVSRPMFLYVRTNGTSKIKMK 576
Query: 227 KGID 238
G++
Sbjct: 577 WGME 580
>sp|P13172|RRP2_IARUD RNA-directed RNA polymerase subunit P2 (Polymerase acidic protein)
(PA)
Length = 716
Score = 29.6 bits (65), Expect = 5.2
Identities = 13/64 (20%), Positives = 32/64 (50%)
Frame = +2
Query: 47 NLKTRNIKIPVSRLKPLKEKWDDIVKILVKELYLQCKADPTKRPLTVYLRSPSNDEVKLQ 226
N + + RL+P KW+ + + ++ L+ RP+ +Y+R+ ++K++
Sbjct: 519 NFVSMEFSLTDPRLEP--HKWEKYCVLEIGDMLLRTAVGQVSRPMFLYVRTNGTSKIKMK 576
Query: 227 KGID 238
G++
Sbjct: 577 WGME 580
>sp|P38308|YB53_YEAST Hypothetical 104.5 kDa protein in CDC47-KTR3 intergenic region
Length = 924
Score = 29.3 bits (64), Expect = 6.8
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = -3
Query: 520 QRSKFSVSSINTSIGSHNMNSCFINYDSTTS 428
QRS SV+SI TSI S N+ ++ STTS
Sbjct: 390 QRSNSSVASITTSIMSSIYNTSHVSLSSTTS 420
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,139,067
Number of Sequences: 369166
Number of extensions: 1196287
Number of successful extensions: 3018
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3017
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3931403200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)