Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_J11
(720 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P57128|DNAA_BUCAI Chromosomal replication initiator prot... 33 0.77
sp|P47288|POTA_MYCGE Spermidine/putrescine import ATP-bindi... 33 1.0
sp|Q9JLN6|ADA28_MOUSE ADAM 28 precursor (A disintegrin and ... 32 1.3
sp|Q9UKQ2|ADA28_HUMAN ADAM 28 precursor (A disintegrin and ... 32 1.7
sp|Q9XSL6|ADA28_MACFA ADAM 28 precursor (A disintegrin and ... 32 2.2
sp|P57162|CYSE_BUCAI Serine acetyltransferase (SAT) 31 3.8
sp|P23394|PRP28_YEAST Pre-mRNA splicing factor RNA helicase... 30 6.5
sp|Q85197|POLG_PVMA Genome polyprotein [Contains: P1 protei... 30 8.5
sp|P12753|RAD50_YEAST DNA repair protein RAD50 (153 kDa pro... 30 8.5
sp|Q9NVH0|CN114_HUMAN Protein C14orf114 30 8.5
>sp|P57128|DNAA_BUCAI Chromosomal replication initiator protein dnaA
Length = 454
Score = 33.1 bits (74), Expect = 0.77
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Frame = +2
Query: 422 KMTDTLDSMTKTVKKARLNKDTKEMETPNRKDIDKIWERLINGKDDIL--YSKNNSPIIN 595
++ +T SM KA+LN + E+ PN+ ++ + ++ +N IL Y NSP+I
Sbjct: 16 ELPNTEFSMWIRSLKAKLNNNILEIYAPNKFVLEWVKDKYLNHLKKILQDYCGTNSPLIK 75
Query: 596 ----PFYKETVTKRNL 631
YKE K+N+
Sbjct: 76 FEIYQIYKENKLKKNI 91
>sp|P47288|POTA_MYCGE Spermidine/putrescine import ATP-binding protein potA
Length = 559
Score = 32.7 bits (73), Expect = 1.0
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Frame = +2
Query: 416 KRKMTDTLDSMTKTVKKARLNKDTKEMET-----PNRKDIDKIWERLINGKDDILYSKNN 580
++K T+ + T K ++ K TKE++T N+K IDK +++L+ + Y +
Sbjct: 239 QKKKTELKADIKATKNKEQIQKLTKELQTLKQKYANKKAIDKEYDKLVVAYNKKDYWTSY 298
Query: 581 SPIINPFYKETVTKRNLFTRAIKTIRSKK*TD 676
KE KR L + K ++KK +D
Sbjct: 299 WETYTLQQKEAFEKRYLSRKLTKAEQNKKVSD 330
>sp|Q9JLN6|ADA28_MOUSE ADAM 28 precursor (A disintegrin and metalloproteinase domain 28)
(Thymic epithelial cell-ADAM) (TECADAM)
Length = 793
Score = 32.3 bits (72), Expect = 1.3
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +2
Query: 479 KDTKEMETPNRKDIDKIWERLINGKDDILYSKNNSPIINPFYKET 613
++T+E E + + ++ +NGK +LY K N+ ++ P Y ET
Sbjct: 44 RETQEPEPKETFETELRYKMTVNGKVAVLYLKKNNKLLAPDYSET 88
>sp|Q9UKQ2|ADA28_HUMAN ADAM 28 precursor (A disintegrin and metalloproteinase domain 28)
(Metalloproteinase-like, disintegrin-like, and
cysteine-rich protein-L) (MDC-L) (eMDC II) (ADAM23)
Length = 775
Score = 32.0 bits (71), Expect = 1.7
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 479 KDTKEMETPNRKDIDKIWERLINGKDDILYSKNNSPIINPFYKET 613
++ KE E + + + ++ INGK +LY K N ++ P Y ET
Sbjct: 42 REAKEPEQQEQFETELKYKMTINGKIAVLYLKKNKNLLAPGYTET 86
>sp|Q9XSL6|ADA28_MACFA ADAM 28 precursor (A disintegrin and metalloproteinase domain 28)
(eMDC II)
Length = 776
Score = 31.6 bits (70), Expect = 2.2
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 479 KDTKEMETPNRKDIDKIWERLINGKDDILYSKNNSPIINPFYKET 613
++ KE E + + + ++ +NGK +LY K N ++ P Y ET
Sbjct: 43 REVKEPEQQEQFETELKYKMTVNGKIAVLYLKKNKNLLAPGYTET 87
>sp|P57162|CYSE_BUCAI Serine acetyltransferase (SAT)
Length = 274
Score = 30.8 bits (68), Expect = 3.8
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 518 IDKIWERLINGKDDILYSKNNSPIINPFYKETVTKRNLFTRAIKTIRSKK 667
I +IW +++ D+ + PI++ FY+ ++ + FT ++ I S K
Sbjct: 6 ISRIWNKILY---DVSFLLKKEPILSDFYQSSILQHQSFTSSLSYILSNK 52
>sp|P23394|PRP28_YEAST Pre-mRNA splicing factor RNA helicase PRP28 (Helicase CA8)
Length = 588
Score = 30.0 bits (66), Expect = 6.5
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 461 KKARLNKDTKEMETPNRKDIDKIWERLINGKDDILYSKNNSPIINP 598
K+ RL K+ +E TP + D K+ + +N +DD +++ N NP
Sbjct: 41 KQERL-KENEESLTPTQSDSAKVEIKKVNSRDDSFFNETNDKKRNP 85
>sp|Q85197|POLG_PVMA Genome polyprotein [Contains: P1 proteinase (N-terminal protein);
Helper component proteinase (HC-pro); Protein P3; 6 kDa
protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6
kDa protein 2 (6K2); Viral genome-linked protein (VPg);
Nuclear inclusion protein A (NI-a) (NIa) (NIa-pro) (49
kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein
B (NI-b) (NIb) (RNA-directed RNA polymerase); Coat
protein (CP)]
Length = 3059
Score = 29.6 bits (65), Expect = 8.5
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +2
Query: 86 TFL*FMNLRSKASNSTEISIHPSIALNENFEDEYDEMDYILNCNEELLNECVK 244
TF F R++ ++ IS HP+ A F D Y +LN N E +K
Sbjct: 366 TFKEFQTQRAREISAVIISEHPNFACVSQFIDRYFSHQRVLNPNVNAYREILK 418
>sp|P12753|RAD50_YEAST DNA repair protein RAD50 (153 kDa protein)
Length = 1312
Score = 29.6 bits (65), Expect = 8.5
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 416 KRKMTDTLDSMTKTVKKARLNKDTKEMETPNRKDIDKIWERLINGKDDILYSKNN 580
+RKM D+L + KT+ ++ KD K E ++ K E ++ + L K N
Sbjct: 840 QRKMNDSLRELRKTISDLQMEKDEKVRENSRMINLIKEKELTVSEIESSLTQKQN 894
>sp|Q9NVH0|CN114_HUMAN Protein C14orf114
Length = 496
Score = 29.6 bits (65), Expect = 8.5
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +2
Query: 197 DYILNCNEELLNECVKRTIEIRK-----QYKKHVPRDILIKNAFEVL 322
DY L E L C KR IRK +Y+KH P ++ N+ +VL
Sbjct: 285 DYYLMVKENLCVVCGKRDSYIRKNVIPHEYRKHFPIEMKDHNSHDVL 331
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,061,884
Number of Sequences: 369166
Number of extensions: 1102878
Number of successful extensions: 3117
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3116
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6413660220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)