Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_J08
(594 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JJS8|MASP2_RAT Mannan-binding lectin serine protease 2... 36 0.083
sp|P54823|DDX6_MOUSE Probable ATP-dependent RNA helicase DD... 35 0.19
sp|P26196|DDX6_HUMAN Probable ATP-dependent RNA helicase DD... 35 0.19
sp|P54824|DDX6_XENLA Probable ATP-dependent RNA helicase DD... 35 0.19
sp|P23128|ME31_DROME Putative ATP-dependent RNA helicase me... 35 0.19
sp|P41379|IF4A2_NICPL Eukaryotic initiation factor 4A-2 (eI... 34 0.32
sp|P39517|DHH1_YEAST Putative ATP-dependent RNA helicase DHH1 33 0.41
sp|Q09181|STE13_SCHPO Putative ATP-dependent RNA helicase s... 33 0.54
sp|Q12099|FAL1_YEAST Probable ATP-dependent RNA helicase FAL1 33 0.70
sp|P41378|IF4A_WHEAT Eukaryotic initiation factor 4A (eIF4A... 32 1.2
>sp|Q9JJS8|MASP2_RAT Mannan-binding lectin serine protease 2 precursor (Mannose-binding
protein associated serine protease 2) (MASP-2)
(MBL-associated serine protease 2) [Contains:
Mannan-binding lectin serine protease 2 A chain;
Mannan-binding lectin serine protease 2 B chain]
Length = 685
Score = 35.8 bits (81), Expect = 0.083
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -2
Query: 401 EWPSPIQGALVHLRFPKAHGNAPAPNWTL 315
+WP P+ G LV L FP+ +GN +WTL
Sbjct: 21 KWPEPVFGRLVSLGFPEKYGNHQDRSWTL 49
>sp|P54823|DDX6_MOUSE Probable ATP-dependent RNA helicase DDX6 (DEAD-box protein 6)
(ATP-dependent RNA helicase p54) (Oncogene RCK homolog)
Length = 483
Score = 34.7 bits (78), Expect = 0.19
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = -3
Query: 364 YGFQKHTETHPHRTGRCGRFEHPGTATNSTTKRD 263
+ F K ET+ HR GR GRF H G A N T D
Sbjct: 409 FDFPKLAETYLHRIGRSGRFGHLGLAINLITYDD 442
>sp|P26196|DDX6_HUMAN Probable ATP-dependent RNA helicase DDX6 (DEAD-box protein 6)
(ATP-dependent RNA helicase p54) (Oncogene RCK)
Length = 483
Score = 34.7 bits (78), Expect = 0.19
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = -3
Query: 364 YGFQKHTETHPHRTGRCGRFEHPGTATNSTTKRD 263
+ F K ET+ HR GR GRF H G A N T D
Sbjct: 409 FDFPKLAETYLHRIGRSGRFGHLGLAINLITYDD 442
>sp|P54824|DDX6_XENLA Probable ATP-dependent RNA helicase DDX6 (DEAD-box protein 6)
(ATP-dependent RNA helicase p54) (Xp54)
Length = 481
Score = 34.7 bits (78), Expect = 0.19
Identities = 17/34 (50%), Positives = 19/34 (55%)
Frame = -3
Query: 364 YGFQKHTETHPHRTGRCGRFEHPGTATNSTTKRD 263
+ F K ET+ HR GR GRF H G A N T D
Sbjct: 408 FDFPKLAETYLHRIGRSGRFGHLGLAINLITYDD 441
>sp|P23128|ME31_DROME Putative ATP-dependent RNA helicase me31b (Maternal expression at
31B)
Length = 459
Score = 34.7 bits (78), Expect = 0.19
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -3
Query: 364 YGFQKHTETHPHRTGRCGRFEHPGTATNSTTKRD 263
+ F + ET+ HR GR GRF H G A N T D
Sbjct: 370 FDFPRMAETYLHRIGRSGRFGHLGIAINLITYED 403
>sp|P41379|IF4A2_NICPL Eukaryotic initiation factor 4A-2 (eIF4A-2) (eIF-4A-2)
Length = 413
Score = 33.9 bits (76), Expect = 0.32
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = -3
Query: 364 YGFQKHTETHPHRTGRCGRFEHPGTATNSTTKRD 263
Y E + HR GR GRF G A NS TK D
Sbjct: 354 YDLPTQPENYLHRIGRSGRFGRKGVAINSVTKDD 387
>sp|P39517|DHH1_YEAST Putative ATP-dependent RNA helicase DHH1
Length = 506
Score = 33.5 bits (75), Expect = 0.41
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -3
Query: 364 YGFQKHTETHPHRTGRCGRFEHPGTATN 281
+ F K ET+ HR GR GRF H G A N
Sbjct: 358 FDFPKTAETYLHRIGRSGRFGHLGLAIN 385
>sp|Q09181|STE13_SCHPO Putative ATP-dependent RNA helicase ste13
Length = 485
Score = 33.1 bits (74), Expect = 0.54
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3
Query: 364 YGFQKHTETHPHRTGRCGRFEHPGTA 287
+ F K+ ET+ HR GR GRF H G A
Sbjct: 356 FDFPKNAETYLHRIGRSGRFGHRGLA 381
>sp|Q12099|FAL1_YEAST Probable ATP-dependent RNA helicase FAL1
Length = 399
Score = 32.7 bits (73), Expect = 0.70
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -3
Query: 364 YGFQKHTETHPHRTGRCGRFEHPGTATNSTTKRDL 260
Y + E + HR GR GRF G A N TK DL
Sbjct: 340 YDLPEIIENYIHRIGRSGRFGRKGVAINFITKADL 374
>sp|P41378|IF4A_WHEAT Eukaryotic initiation factor 4A (eIF4A) (eIF-4A)
Length = 414
Score = 32.0 bits (71), Expect = 1.2
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -3
Query: 364 YGFQKHTETHPHRTGRCGRFEHPGTATNSTTKRD 263
Y E + HR GR GRF G A N T+ D
Sbjct: 355 YDLPTQPENYQHRIGRSGRFGRKGVAINFVTRED 388
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,402,860
Number of Sequences: 369166
Number of extensions: 1199216
Number of successful extensions: 2787
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2785
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4504118060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)