Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_I22
(709 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51863|VA0D_MOUSE Vacuolar ATP synthase subunit d (V-ATP... 199 5e-51
sp|P61420|VA0D_BOVIN Vacuolar ATP synthase subunit d (V-ATP... 199 5e-51
sp|Q25531|VA0D_MANSE Vacuolar ATP synthase subunit d (V-ATP... 199 5e-51
sp|Q9W4P5|VA0D1_DROME Vacuolar ATP synthase subunit d 1 (V-... 196 4e-50
sp|P54641|VA0D_DICDI Vacuolar ATP synthase subunit d (V-ATP... 145 8e-35
sp|P53659|VA0D_NEUCR Vacuolar ATP synthase subunit d (V-ATP... 134 2e-31
sp|O13753|VA0D_SCHPO Vacuolar ATP synthase subunit d (V-ATP... 122 7e-28
sp|Q9LHA4|VA0D2_ARATH Probable vacuolar ATP synthase subuni... 117 4e-26
sp|Q9LJI5|VA0D1_ARATH Probable vacuolar ATP synthase subuni... 117 4e-26
sp|Q9VCQ3|VA0D2_DROME Probable vacuolar ATP synthase subuni... 102 8e-22
>sp|P51863|VA0D_MOUSE Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase
40 kDa accessory protein) (P39) (Physophilin)
Length = 351
Score = 199 bits (507), Expect = 5e-51
Identities = 95/128 (74%), Positives = 110/128 (85%), Gaps = 1/128 (0%)
Frame = +2
Query: 5 ITINSFDTELSKEDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVG 184
ITINSF TELSKEDRA L+P CGRLYPEGL+ LARADDYEQVK VADYY EYK +FEG G
Sbjct: 223 ITINSFGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAG 282
Query: 185 TG-NDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRA 361
+ DK+LED+FFEHEVK+N +F+ QF+F VFY+ +KLKEQE RNIVWIAEC++QRHRA
Sbjct: 283 SNPGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRA 342
Query: 362 KIDSYINI 385
KID+YI I
Sbjct: 343 KIDNYIPI 350
>sp|P61420|VA0D_BOVIN Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase
40 kDa accessory protein) (P39) (32 kDa accessory
protein)
sp|P61421|VA0D_HUMAN Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase
40 kDa accessory protein) (P39) (32 kDa accessory
protein)
Length = 351
Score = 199 bits (507), Expect = 5e-51
Identities = 95/128 (74%), Positives = 110/128 (85%), Gaps = 1/128 (0%)
Frame = +2
Query: 5 ITINSFDTELSKEDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVG 184
ITINSF TELSKEDRA L+P CGRLYPEGL+ LARADDYEQVK VADYY EYK +FEG G
Sbjct: 223 ITINSFGTELSKEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAG 282
Query: 185 TG-NDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRA 361
+ DK+LED+FFEHEVK+N +F+ QF+F VFY+ +KLKEQE RNIVWIAEC++QRHRA
Sbjct: 283 SNPGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRA 342
Query: 362 KIDSYINI 385
KID+YI I
Sbjct: 343 KIDNYIPI 350
>sp|Q25531|VA0D_MANSE Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 40 kDa subunit) (M40)
Length = 348
Score = 199 bits (507), Expect = 5e-51
Identities = 94/128 (73%), Positives = 113/128 (88%), Gaps = 1/128 (0%)
Frame = +2
Query: 5 ITINSFDTELSKEDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVG 184
ITINSF TELSK+DRA LYP+CG+L P+GL+ LARADDYEQVKAVA+YY+EY A+FEG G
Sbjct: 220 ITINSFGTELSKDDRAKLYPRCGKLNPDGLAALARADDYEQVKAVAEYYAEYSALFEGAG 279
Query: 185 TG-NDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRA 361
DK+LEDKFFEHEV +NV++F+QQF+F VFYS +KLKEQE RNIVWI+ECV+Q+HRA
Sbjct: 280 NNVGDKTLEDKFFEHEVNLNVHAFLQQFHFGVFYSYLKLKEQECRNIVWISECVAQKHRA 339
Query: 362 KIDSYINI 385
KID+YI I
Sbjct: 340 KIDNYIPI 347
>sp|Q9W4P5|VA0D1_DROME Vacuolar ATP synthase subunit d 1 (V-ATPase d subunit 1) (Vacuolar
proton pump d subunit 1) (V-ATPase 39 kDa subunit 1)
Length = 350
Score = 196 bits (499), Expect = 4e-50
Identities = 92/128 (71%), Positives = 112/128 (87%), Gaps = 1/128 (0%)
Frame = +2
Query: 5 ITINSFDTELSKEDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVG 184
ITINSF TELSK+DRA LYP CG++YP+GL+ LARADDYEQVK VA+YY+EY A+F+G G
Sbjct: 222 ITINSFGTELSKDDRAKLYPNCGKMYPDGLAALARADDYEQVKTVAEYYAEYAALFDGSG 281
Query: 185 TG-NDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRA 361
DK+LEDKFFEHEVK++V +F+QQF+F VFY+ +KLKEQE RNIVWIAECV+Q+HRA
Sbjct: 282 NNPGDKTLEDKFFEHEVKLDVYAFLQQFHFGVFYAYLKLKEQECRNIVWIAECVAQKHRA 341
Query: 362 KIDSYINI 385
KID+YI I
Sbjct: 342 KIDNYIPI 349
>sp|P54641|VA0D_DICDI Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 41 kDa accessory
protein) (DVA41)
Length = 356
Score = 145 bits (367), Expect = 8e-35
Identities = 72/128 (56%), Positives = 92/128 (71%), Gaps = 1/128 (0%)
Frame = +2
Query: 5 ITINSFD-TELSKEDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGV 181
ITINSF TELSK+DR LYP G LYPEG S L +A+D +QV+ + + YS Y+ F
Sbjct: 229 ITINSFGATELSKDDREKLYPSLGLLYPEGTSKLGKAEDVDQVRGILEVYSTYRNFFSD- 287
Query: 182 GTGNDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRA 361
G N+KSLED FFEHEV +N +F Q+ + VFY+ IKL+EQE+RNIVWIAEC+SQ +
Sbjct: 288 GVNNEKSLEDSFFEHEVHLNRMAFEDQYGYGVFYAYIKLREQEIRNIVWIAECISQNMKQ 347
Query: 362 KIDSYINI 385
K++ YI I
Sbjct: 348 KMNQYIPI 355
>sp|P53659|VA0D_NEUCR Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 41 kDa subunit)
Length = 364
Score = 134 bits (338), Expect = 2e-31
Identities = 63/141 (44%), Positives = 95/141 (67%), Gaps = 14/141 (9%)
Frame = +2
Query: 5 ITINSFDTELSKEDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVG 184
IT+NSF TELSK DR LYP G+LYPEG ML+RADD+E V+ + ++YK+ F+ G
Sbjct: 223 ITLNSFGTELSKADRKKLYPNFGQLYPEGTLMLSRADDFEGVRLAVEGVADYKSFFDAAG 282
Query: 185 TGND--------------KSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNI 322
G KSLED F++ E++++ +F +QF +A+ Y+ +KL+EQE+RNI
Sbjct: 283 LGGGPSGPGNMGGGGTEGKSLEDMFYQKEMEISKMAFTRQFTYAIVYAWVKLREQEIRNI 342
Query: 323 VWIAECVSQRHRAKIDSYINI 385
WIAEC++Q + +I++YI++
Sbjct: 343 TWIAECIAQNQKERINNYISV 363
>sp|O13753|VA0D_SCHPO Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 39 kDa subunit)
(V-ATPase subunit M39)
Length = 343
Score = 122 bits (307), Expect = 7e-28
Identities = 61/128 (47%), Positives = 86/128 (67%)
Frame = +2
Query: 5 ITINSFDTELSKEDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVG 184
ITINSF TELSKE+RA +YP GRLYP S+LARA++ V+ EY F+
Sbjct: 219 ITINSFGTELSKEERAKMYPSFGRLYPFSTSILARAENAGDVENACSLVKEYSDFFD--- 275
Query: 185 TGNDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAK 364
+ KSL+D F E EV++N +F+QQF++ + Y+ +KL+EQE+RN+ WIAEC+SQ R +
Sbjct: 276 QNSQKSLDDHFNEKEVELNKLAFLQQFHYGIVYAFLKLREQEIRNLTWIAECISQNQRDR 335
Query: 365 IDSYINIL 388
+ + IL
Sbjct: 336 ALNIVPIL 343
>sp|Q9LHA4|VA0D2_ARATH Probable vacuolar ATP synthase subunit d 2 (V-ATPase d subunit 2)
(Vacuolar proton pump d subunit 2)
Length = 351
Score = 117 bits (292), Expect = 4e-26
Identities = 55/121 (45%), Positives = 83/121 (68%)
Frame = +2
Query: 5 ITINSFDTELSKEDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVG 184
ITINS TEL++EDR LY G LYP G LA +D +QV+ V + Y Y+AIF +
Sbjct: 223 ITINSIGTELTREDRKKLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMS 282
Query: 185 TGNDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAK 364
G + L+ F+E EV+ +F QQF++AVF++ ++L+EQE+RN++WI+ECV+Q +++
Sbjct: 283 YGESQMLDKAFYEEEVRRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSR 342
Query: 365 I 367
I
Sbjct: 343 I 343
>sp|Q9LJI5|VA0D1_ARATH Probable vacuolar ATP synthase subunit d 1 (V-ATPase d subunit 1)
(Vacuolar proton pump d subunit 1)
Length = 351
Score = 117 bits (292), Expect = 4e-26
Identities = 55/121 (45%), Positives = 83/121 (68%)
Frame = +2
Query: 5 ITINSFDTELSKEDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVG 184
ITINS TEL++EDR LY G LYP G LA +D +QV+ V + Y Y+AIF +
Sbjct: 223 ITINSIGTELTREDRKKLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMS 282
Query: 185 TGNDKSLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHRAK 364
G + L+ F+E EV+ +F QQF++AVF++ ++L+EQE+RN++WI+ECV+Q +++
Sbjct: 283 YGESQMLDKAFYEEEVRRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSR 342
Query: 365 I 367
I
Sbjct: 343 I 343
>sp|Q9VCQ3|VA0D2_DROME Probable vacuolar ATP synthase subunit d 2 (V-ATPase d subunit 2)
(Vacuolar proton pump d subunit 2) (V-ATPase 39 kDa
subunit 2)
Length = 350
Score = 102 bits (255), Expect = 8e-22
Identities = 46/129 (35%), Positives = 85/129 (65%), Gaps = 2/129 (1%)
Frame = +2
Query: 5 ITINSFDTELSKEDRANLYPKCGRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVG 184
I +N+ +++ ++R ++P CG L L+ ++ +D ++++ V + + Y +F+ +
Sbjct: 219 IAVNAIGSDIIPKERLKMFPTCGYLPKIALASMSTLNDTDKIRDVCNVFDGYGKMFDNLE 278
Query: 185 TGNDK--SLEDKFFEHEVKMNVNSFMQQFNFAVFYSLIKLKEQEMRNIVWIAECVSQRHR 358
+D +LED+F E K NV +F+QQ++F +FYS IKLK+ E+RNIVWI+EC++QR
Sbjct: 279 RDSDGMITLEDRFLMMEAKKNVQTFLQQYHFGIFYSFIKLKQLEVRNIVWISECIAQRQT 338
Query: 359 AKIDSYINI 385
+I+++I I
Sbjct: 339 DRINAFIPI 347
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,035,753
Number of Sequences: 369166
Number of extensions: 1380818
Number of successful extensions: 3371
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3344
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6219306880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)