Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_I20
(327 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48509|CD151_HUMAN Platelet-endothelial tetraspan antige... 41 0.001
sp|P61171|CD151_MACMU Platelet-endothelial tetraspan antige... 40 0.002
sp|O35566|C151_MOUSE Platelet-endothelial tetraspan antigen... 39 0.004
sp|O60637|TSN3_HUMAN Tetraspanin-3 (Tspan-3) (Transmembrane... 39 0.005
sp|Q9QY33|TSN3_MOUSE Tetraspanin-3 (Tspan-3) (Transmembrane... 39 0.005
sp|Q9QZA6|CD151_RAT Platelet endothelial tetraspan antigen ... 39 0.005
sp|Q9UKR8|TNS16_HUMAN Tetraspanin-16 (Tspan-16) (Transmembr... 35 0.069
sp|Q7YQL0|TSN7_PANTR Tetraspanin-7 (Tspan-7) (Transmembrane... 30 1.7
sp|P41732|TSN7_HUMAN Tetraspanin-7 (Tspan-7) (Transmembrane... 30 1.7
sp|Q7YQK9|TSN7_PONPY Tetraspanin-7 (Tspan-7) (Transmembrane... 30 1.7
>sp|P48509|CD151_HUMAN Platelet-endothelial tetraspan antigen 3 (PETA-3) (GP27) (Membrane
glycoprotein SFA-1) (CD151 antigen) (Tetraspanin-24)
(Tspan-24)
Length = 253
Score = 40.8 bits (94), Expect = 0.001
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 220 IKQKLKCCGLQNASDWLHSSWYTKSNKTGQTVPESC 327
++Q+ CCG N+ DW S W G+ VP+SC
Sbjct: 149 LQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVVPDSC 184
>sp|P61171|CD151_MACMU Platelet-endothelial tetraspan antigen 3 (PETA-3) (CD151 antigen)
sp|P61170|CD151_CERAE Platelet-endothelial tetraspan antigen 3 (PETA-3) (CD151 antigen)
Length = 253
Score = 40.0 bits (92), Expect = 0.002
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 220 IKQKLKCCGLQNASDWLHSSWYTKSNKTGQTVPESC 327
++Q+ CCG N+ DW S W G+ VP+SC
Sbjct: 149 LQQEFHCCGSNNSQDWRDSEWIRLREARGRVVPDSC 184
>sp|O35566|C151_MOUSE Platelet-endothelial tetraspan antigen 3 (PETA-3) (GP27) (Membrane
glycoprotein SFA-1) (CD151 antigen)
Length = 253
Score = 38.9 bits (89), Expect = 0.004
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 220 IKQKLKCCGLQNASDWLHSSWYTKSNKTGQTVPESC 327
++Q+ CCG N+ DW S W + VP+SC
Sbjct: 149 LQQEFHCCGSNNSQDWQDSEWIRSGEADSRVVPDSC 184
>sp|O60637|TSN3_HUMAN Tetraspanin-3 (Tspan-3) (Transmembrane 4 superfamily member 8)
(Tetraspanin TM4-A)
Length = 253
Score = 38.5 bits (88), Expect = 0.005
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +1
Query: 220 IKQKLKCCGLQNASDWLHSSWYTKSNKTGQTVPESC 327
++++L CCG+ N SDW ++ W+ ++ Q+VP SC
Sbjct: 141 VQRQLHCCGIHNYSDWENTDWFKETK--NQSVPLSC 174
>sp|Q9QY33|TSN3_MOUSE Tetraspanin-3 (Tspan-3) (Transmembrane 4 superfamily member 8)
(Tetraspanin TM4-A) (OSP-associated protein 1) (OAP-1)
Length = 253
Score = 38.5 bits (88), Expect = 0.005
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +1
Query: 220 IKQKLKCCGLQNASDWLHSSWYTKSNKTGQTVPESC 327
++++L CCG+ N SDW ++ W+ ++ Q+VP SC
Sbjct: 141 VQRQLHCCGIHNYSDWENTDWFKETK--NQSVPLSC 174
>sp|Q9QZA6|CD151_RAT Platelet endothelial tetraspan antigen 3 (CD151 antigen)
Length = 253
Score = 38.5 bits (88), Expect = 0.005
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 220 IKQKLKCCGLQNASDWLHSSWYTKSNKTGQTVPESC 327
++Q+ CCG N+ DW S W + VP+SC
Sbjct: 149 LQQEFHCCGSNNSRDWRDSEWIRSGEADSRVVPDSC 184
>sp|Q9UKR8|TNS16_HUMAN Tetraspanin-16 (Tspan-16) (Transmembrane 4 superfamily member 16)
(Tetraspanin TM4-B)
Length = 245
Score = 34.7 bits (78), Expect = 0.069
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 220 IKQKLKCCGLQNASDWLHSSWYTKSNKTGQTVPESC 327
+ +KLKCCG+ N +D+ SS+ TG T P SC
Sbjct: 147 VMEKLKCCGVNNYTDFSGSSF---EMTTGHTYPRSC 179
>sp|Q7YQL0|TSN7_PANTR Tetraspanin-7 (Tspan-7) (Transmembrane 4 superfamily member 2)
Length = 244
Score = 30.0 bits (66), Expect = 1.7
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 217 NIKQKLKCCGLQNASDWLHSSWYTKSNKTGQTVPESC 327
++++ L CCG+QN ++W S ++ + +P SC
Sbjct: 138 HVQRSLSCCGVQNYTNWSTSPYFLEHG-----IPPSC 169
>sp|P41732|TSN7_HUMAN Tetraspanin-7 (Tspan-7) (Transmembrane 4 superfamily member 2)
(Cell surface glycoprotein A15) (T-cell acute
lymphoblastic leukemia associated antigen 1) (TALLA-1)
(Membrane component, X chromosome, surface marker 1)
(CD231 antigen)
Length = 249
Score = 30.0 bits (66), Expect = 1.7
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 217 NIKQKLKCCGLQNASDWLHSSWYTKSNKTGQTVPESC 327
++++ L CCG+QN ++W S ++ + +P SC
Sbjct: 143 HVQRSLSCCGVQNYTNWSTSPYFLEHG-----IPPSC 174
>sp|Q7YQK9|TSN7_PONPY Tetraspanin-7 (Tspan-7) (Transmembrane 4 superfamily member 2)
Length = 244
Score = 30.0 bits (66), Expect = 1.7
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 217 NIKQKLKCCGLQNASDWLHSSWYTKSNKTGQTVPESC 327
++++ L CCG+QN ++W S ++ + +P SC
Sbjct: 138 HVQRSLSCCGVQNYTNWSTSPYFLEHG-----IPPSC 169
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,562,351
Number of Sequences: 369166
Number of extensions: 480064
Number of successful extensions: 1285
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 68,354,980
effective HSP length: 77
effective length of database: 54,130,385
effective search space used: 1678041935
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)