Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_I14
(518 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27895|CIN8_YEAST Kinesin-like protein CIN8 34 0.18
sp|Q8K991|TIG_BUCAP Trigger factor (TF) 32 0.69
sp|Q50288|Y200_MYCPN Hypothetical lipoprotein MPN200 precur... 31 1.5
sp|Q8KA40|FLIK_BUCAP Flagellar hook-length control protein 31 2.0
sp|Q5HZ36|GAT24_ARATH GATA transcription factor 24 30 3.4
sp|P75417|Y364_MYCPN Hypothetical protein MPN364 (H91_orf677) 30 3.4
sp|Q58936|YF41_METJA Hypothetical protein MJ1541 30 4.5
sp|P75489|Y288_MYCPN Hypothetical lipoprotein MPN288 precur... 29 5.9
sp|P75280|Y506_MYCPN Hypothetical lipoprotein MPN506 precur... 29 5.9
sp|P75139|Y147_MYCPN Hypothetical protein MPN147 (E07_orf485) 29 5.9
>sp|P27895|CIN8_YEAST Kinesin-like protein CIN8
Length = 1038
Score = 34.3 bits (77), Expect = 0.18
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Frame = -2
Query: 337 KMCKTKFSSKITKMFNYKNTFIKFDLVKINVQNQPQTI-ENLKI*FYSTKNHKKSVHNQI 161
K C K ++ K FN K D+++++ Q + I ENL N K+
Sbjct: 726 KDCVKKILNESPKFFNV--VIEKIDIIRVDFQKFYKNIAENLSDISEENNNMKQ------ 777
Query: 160 FIKNGSYKNNFEQFHHRHGNSK*QNQHFSNSDSISALQSLIGDEV 26
++KN +KNN ++ +RH +S +N ++ + + ++ D +
Sbjct: 778 YLKNHFFKNNHQELLNRHVDSTYENIEKRTNEFVENFKKVLNDHL 822
>sp|Q8K991|TIG_BUCAP Trigger factor (TF)
Length = 442
Score = 32.3 bits (72), Expect = 0.69
Identities = 23/59 (38%), Positives = 32/59 (54%)
Frame = -3
Query: 237 NLKP*KI*KFNFIQRKTIKNLCITRFSSKTALTKIISSNFIIGMVIRNNKINISPILIQ 61
N+K KI K + + +TIKN I + S LT+ N II +I N INI P L++
Sbjct: 254 NIKTIKINKLSKLNYQTIKNNIIEKIKS---LTQNHLQNQIIKQLIIKNPINIPPTLLR 309
>sp|Q50288|Y200_MYCPN Hypothetical lipoprotein MPN200 precursor (GT9_orf798)
Length = 798
Score = 31.2 bits (69), Expect = 1.5
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = -2
Query: 292 NYKNTFIKFDLVKI---NVQNQPQTIENLKI*FYSTKNHKKSVHNQIFI-KNGSYKNNFE 125
+Y N F K + N N+ + +NLK F KN N +++ K GSY +NF+
Sbjct: 342 DYNNFFYKVQNGRADFSNFNNKGSSYKNLKNVFNDYKN--LIAQNGLYVNKGGSYSSNFQ 399
Query: 124 QFH 116
+FH
Sbjct: 400 KFH 402
>sp|Q8KA40|FLIK_BUCAP Flagellar hook-length control protein
Length = 381
Score = 30.8 bits (68), Expect = 2.0
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Frame = -2
Query: 490 HQMLTKFRIYQISKSD*IFTNSVLKSRIILNYKNYNFPLKIHFNQ*K*QEIKMCKTKFS- 314
+Q KF ++ I K N + + I + N+N K F + + IK K+ FS
Sbjct: 129 NQKYKKFIVHPIFKKSIEIKNQSNEFKQINIFHNFND--KFFFRKDRYSNIKSNKSIFSD 186
Query: 313 SKITKMFNY--KNTFIKFDLVKINVQNQPQTIENLKI*FYSTKNHKKSVHNQIFIKNGSY 140
+KI + F KNT F L IN + T E + K H K V++ + + N
Sbjct: 187 NKILRCFRNFRKNTPDLFFLKNINKISNVTTYETNTFKDNNNKKHLKCVNSSLELLNSKK 246
Query: 139 KNNFEQ 122
+ ++Q
Sbjct: 247 NDKWKQ 252
>sp|Q5HZ36|GAT24_ARATH GATA transcription factor 24
Length = 398
Score = 30.0 bits (66), Expect = 3.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -2
Query: 271 KFDLVKINVQNQPQTIENLKI*FYSTKNHKKSVHNQIFIKNGSYKNNFEQFHHRHGNSK 95
K L+K + N Q I+ + NHK+S H + ++K NF++ HH N K
Sbjct: 150 KMRLIKKTITNNKQLIDQT-----NNNNHKESDHYPL-----NHKTNFDEDHHEDLNFK 198
>sp|P75417|Y364_MYCPN Hypothetical protein MPN364 (H91_orf677)
Length = 677
Score = 30.0 bits (66), Expect = 3.4
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Frame = -2
Query: 292 NYKNTFIKFDLVKI---NVQNQPQTIENLKI*FYSTKNHKKSVH-NQIFI-KNGSYKNNF 128
NY N F K + N +N+ + +NL+ F ++K+ + N +F+ K GSY +NF
Sbjct: 230 NYDNFFYKVQDGRADFSNFKNKETSYQNLQKVF---SDYKELIDKNGLFVNKGGSYSSNF 286
Query: 127 EQFH 116
++FH
Sbjct: 287 QKFH 290
>sp|Q58936|YF41_METJA Hypothetical protein MJ1541
Length = 420
Score = 29.6 bits (65), Expect = 4.5
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = -2
Query: 394 KNYNFPLKIHFNQ*K*QEIKMCKTKFSSKITKMFNYKNTFIKFDLVK 254
K YN P+ IH N+ EIKM K K + F Y N+F FD V+
Sbjct: 194 KKYNVPIHIHLNE-TLDEIKMVKEKTG---MEPFIYLNSFGFFDDVR 236
>sp|P75489|Y288_MYCPN Hypothetical lipoprotein MPN288 precursor (A65_orf787o)
Length = 787
Score = 29.3 bits (64), Expect = 5.9
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = -2
Query: 292 NYKNTFIKFDLVKI---NVQNQPQTIENLKI*FYSTKNHKKSVHNQIFI-KNGSYKNNFE 125
+Y N F K + + N +N+ + +NL+ F K N IF+ K GSY +NF+
Sbjct: 349 DYNNFFYKIENGRADFSNFKNKGTSYQNLQKVFGDFKGLIDK--NGIFVNKGGSYSSNFQ 406
Query: 124 QFH 116
+FH
Sbjct: 407 KFH 409
>sp|P75280|Y506_MYCPN Hypothetical lipoprotein MPN506 precursor (P02_orf793)
Length = 793
Score = 29.3 bits (64), Expect = 5.9
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = -2
Query: 292 NYKNTFIKFDLVKI---NVQNQPQTIENLKI*FYSTKNHKKSVHNQIFI-KNGSYKNNFE 125
+Y N F K + + N +N+ + +NL+ F K N IF+ K GSY +NF+
Sbjct: 343 DYNNFFYKIENGRADFSNFKNKGTSYQNLQKVFGDFKGLIDK--NGIFVNKGGSYSSNFQ 400
Query: 124 QFH 116
+FH
Sbjct: 401 KFH 403
>sp|P75139|Y147_MYCPN Hypothetical protein MPN147 (E07_orf485)
Length = 485
Score = 29.3 bits (64), Expect = 5.9
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = -2
Query: 292 NYKNTFIKFDLVKI---NVQNQPQTIENLKI*FYSTKNHKKSVHNQIFI-KNGSYKNNFE 125
+Y N F K + + N N+ + +NL+ + KN S N +F K+GSY +NFE
Sbjct: 51 SYDNFFYKVENGRADFRNFANKGTSYKNLEKVYNDYKNLIGS--NGLFASKDGSYSSNFE 108
Query: 124 QFH 116
+FH
Sbjct: 109 KFH 111
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,187,339
Number of Sequences: 369166
Number of extensions: 926989
Number of successful extensions: 2008
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2006
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3403581975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)