Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_I09
(895 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q22494|VATH2_CAEEL Probable vacuolar ATP synthase subuni... 235 1e-61
sp|Q9U5N0|VATH_MANSE Vacuolar ATP synthase subunit H (V-ATP... 224 2e-58
sp|Q8BVE3|VATH_MOUSE Vacuolar ATP synthase subunit H (V-ATP... 215 2e-55
sp|Q9V3J1|VATH_DROME Vacuolar ATP synthase subunit H (V-ATP... 212 1e-54
sp|Q9UI12|VATH_HUMAN Vacuolar ATP synthase subunit H (V-ATP... 211 2e-54
sp|Q9TVC1|VATH_PIG Vacuolar ATP synthase subunit H (V-ATPas... 210 4e-54
sp|O46563|VATH_BOVIN Vacuolar ATP synthase subunit H (V-ATP... 207 4e-53
sp|Q20666|VATH1_CAEEL Probable vacuolar ATP synthase subuni... 145 2e-34
sp|Q9LX65|VATH_ARATH Probable vacuolar ATP synthase subunit... 70 8e-12
sp|O14265|VATH_SCHPO Vacuolar ATP synthase subunit H (V-ATP... 56 2e-07
>sp|Q22494|VATH2_CAEEL Probable vacuolar ATP synthase subunit H 2 (V-ATPase H subunit 2)
(Vacuolar proton pump H subunit 2) (Vacuolar proton pump
subunit SFD 2)
Length = 470
Score = 235 bits (600), Expect = 1e-61
Identities = 128/288 (44%), Positives = 185/288 (64%), Gaps = 5/288 (1%)
Frame = +3
Query: 6 QFISPDCYTFILKYDRAANSEARDAIIKESPHN--AAKMFIFLLNKMAMEQTIQYLLTMI 179
Q I D Y FI ++ A + E RD ++ + N AAK L+ ++A +Q ++Y+LT+
Sbjct: 42 QMIQEDDYNFITSFENAKSKEERDQVLAANNANGQAAKTMANLITQVAKDQNVRYVLTLF 101
Query: 180 DDMLQEDKQKVEIFRLYFAKTKDSMMENFFCFLRRENKFIAYQASRIIAKIACWSSQLME 359
DDMLQEDK +VE+F A+ K ++ + L+R++ FI Q S IIAK+AC+ + ME
Sbjct: 102 DDMLQEDKSRVELFHSAAARQKRTVWSQYLGILQRQDNFIVNQMSSIIAKLACFGTTRME 161
Query: 360 TKDLQYFLRWIQDQFR-FPDNEYMQTVARNLQMMLRIRQYRKVFVECSGVETIVNALGGK 536
+DLQY+ ++++Q + N+YM T AR LQMMLR +YR FV+ GV+T+V AL GK
Sbjct: 162 GQDLQYYFSFLKEQLKNSTTNDYMNTTARCLQMMLRHDEYRHEFVDSDGVQTLVTALNGK 221
Query: 537 LNTQIQYQLIFCLWCLSFDADIVIQIIKTPS--LISVVSDIIRQTEREKIIRVSLALFRY 710
N Q+QYQLIF +WCL+F+ADI K PS LI + DI+ ++ +EK+IR+ LA F
Sbjct: 222 TNFQLQYQLIFAVWCLTFNADIA---RKAPSLGLIQALGDILSESTKEKVIRIILASFVN 278
Query: 711 LLEKLSNQNQVREVALAMVQCKIMKQLELLQQKDYSHDPELTDDLAYL 854
+L K+ + RE AL MVQCK +K LEL+ K Y DP+L DD+ +L
Sbjct: 279 ILSKVDEREVKREAALQMVQCKTLKTLELMDAKKYD-DPDLEDDVKFL 325
>sp|Q9U5N0|VATH_MANSE Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar
proton pump H subunit) (Vacuolar proton pump subunit
SFD)
Length = 475
Score = 224 bits (572), Expect = 2e-58
Identities = 111/284 (39%), Positives = 188/284 (66%)
Frame = +3
Query: 3 GQFISPDCYTFILKYDRAANSEARDAIIKESPHNAAKMFIFLLNKMAMEQTIQYLLTMID 182
GQ I+ + FI+ D+ + D ++P A +F+ LL ++ + TIQY+L +ID
Sbjct: 50 GQMITQRDHDFIVNLDQRGQKDLPD----KNPDACADVFLNLLTHISKDHTIQYILVLID 105
Query: 183 DMLQEDKQKVEIFRLYFAKTKDSMMENFFCFLRRENKFIAYQASRIIAKIACWSSQLMET 362
D+L EDK +V+IFR K ++ + F L R+++F+ + +RIIAK+ACW QLM+
Sbjct: 106 DILSEDKSRVKIFRE--TKYSGNIWQPFLNLLNRQDEFVQHMTARIIAKLACWHPQLMDK 163
Query: 363 KDLQYFLRWIQDQFRFPDNEYMQTVARNLQMMLRIRQYRKVFVECSGVETIVNALGGKLN 542
DL ++L W++DQ + +N+Y+Q+VAR LQMMLR+ +YR F+ G+ T+++ L ++N
Sbjct: 164 SDLHFYLSWLKDQLKMNNNDYIQSVARCLQMMLRVDEYRFAFLSVDGISTLLSILASRVN 223
Query: 543 TQIQYQLIFCLWCLSFDADIVIQIIKTPSLISVVSDIIRQTEREKIIRVSLALFRYLLEK 722
Q+QYQL+FCLW L+F+ ++ + + + I +++DI+ + +EK+ R+ LA+FR L+EK
Sbjct: 224 FQVQYQLVFCLWVLTFN-PLLAEKMNKFNAIPILADILSDSVKEKVTRIVLAVFRNLIEK 282
Query: 723 LSNQNQVREVALAMVQCKIMKQLELLQQKDYSHDPELTDDLAYL 854
+Q +E +AMVQCK++KQL +L+QK S D ++ +D+ +L
Sbjct: 283 PQDQQVAKEHCIAMVQCKVLKQLSILEQK-RSDDEDIMNDVEFL 325
>sp|Q8BVE3|VATH_MOUSE Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar
proton pump H subunit)
Length = 483
Score = 215 bits (547), Expect = 2e-55
Identities = 114/302 (37%), Positives = 182/302 (60%), Gaps = 18/302 (5%)
Frame = +3
Query: 3 GQFISPDCYTFILKYDRAANSEARDAIIKESPHNAAKMFIFLLNKMAMEQTIQYLLTMID 182
GQ IS + FI +++ +SE + +++ AK FI L+ ++ EQT+QY+LTM+D
Sbjct: 39 GQMISAEDCEFIQRFEMKRSSEDKQEMLQTEGSQCAKTFINLMTHISKEQTVQYILTMVD 98
Query: 183 DMLQEDKQKVEIFRLYFAKTKDSMMENFFCFLRRENKFIAYQASRIIAKIACWSSQLMET 362
DMLQE+ Q+V IF Y ++K + F L R++ F + A+RIIAK+A W +LME
Sbjct: 99 DMLQENHQRVSIFFDYAKRSKSTAWPYFLPMLNRQDPFTVHMAARIIAKLAAWGKELMEG 158
Query: 363 KDLQYFLRWIQDQF------------------RFPDNEYMQTVARNLQMMLRIRQYRKVF 488
DL Y+ WI+ Q ++Y+Q VA LQ+MLR+ +YR +
Sbjct: 159 SDLNYYFNWIKTQLSSQKLRGSGVAVETGTISSSDSSQYVQCVAGCLQLMLRVNEYRFAW 218
Query: 489 VECSGVETIVNALGGKLNTQIQYQLIFCLWCLSFDADIVIQIIKTPSLISVVSDIIRQTE 668
VE GV I+ L K Q+QYQ+IF +W L+F + + ++ ++I V+SDI++++
Sbjct: 219 VEADGVNCIMGVLSNKCGFQLQYQMIFSIWLLAFSPQ-MCEHLRRYNIIPVLSDILQESV 277
Query: 669 REKIIRVSLALFRYLLEKLSNQNQVREVALAMVQCKIMKQLELLQQKDYSHDPELTDDLA 848
+EK+ R+ LA FR LEK + + +E ALAM+QCK++KQLE L+Q+ Y D ++++D+
Sbjct: 278 KEKVTRIILAAFRNFLEKSTERETRQEYALAMIQCKVLKQLENLEQQKYD-DEDISEDIK 336
Query: 849 YL 854
+L
Sbjct: 337 FL 338
>sp|Q9V3J1|VATH_DROME Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar
proton pump H subunit) (Vacuolar proton pump subunit
SFD)
Length = 468
Score = 212 bits (539), Expect = 1e-54
Identities = 107/283 (37%), Positives = 180/283 (63%)
Frame = +3
Query: 6 QFISPDCYTFILKYDRAANSEARDAIIKESPHNAAKMFIFLLNKMAMEQTIQYLLTMIDD 185
Q IS + Y I D++ R + + ++ K + L++ ++ + TIQY+L ++DD
Sbjct: 42 QMISEEDYKAISALDKS-----RASFLAQNSSQVVKTLLNLVSHLSKDSTIQYILVLLDD 96
Query: 186 MLQEDKQKVEIFRLYFAKTKDSMMENFFCFLRRENKFIAYQASRIIAKIACWSSQLMETK 365
+LQED+ +V++F K K + F L R++ FI +SRI+AK ACW + M
Sbjct: 97 LLQEDRSRVDLFHDTAGKLKQCIWGPFLNLLNRQDGFIVNMSSRILAKFACWGHETMPKS 156
Query: 366 DLQYFLRWIQDQFRFPDNEYMQTVARNLQMMLRIRQYRKVFVECSGVETIVNALGGKLNT 545
DL ++L++++DQ +NEY+Q+VAR LQMMLR+ +YR FV G+ T++ L ++N
Sbjct: 157 DLNFYLQFLKDQLASNNNEYIQSVARCLQMMLRVDEYRFAFVGVDGISTLIRILSTRVNF 216
Query: 546 QIQYQLIFCLWCLSFDADIVIQIIKTPSLISVVSDIIRQTEREKIIRVSLALFRYLLEKL 725
Q+QYQLIFCLW L+F+ + ++ K S+I +++DI+ +EK+ R+ LA+FR L+EK
Sbjct: 217 QVQYQLIFCLWVLTFNPLLAAKMNKF-SVIPILADILSDCAKEKVTRIILAVFRNLIEKP 275
Query: 726 SNQNQVREVALAMVQCKIMKQLELLQQKDYSHDPELTDDLAYL 854
+ + ++ +AMVQCK++KQL +L+Q+ + D ++T D+ YL
Sbjct: 276 EDSSVAKDHCIAMVQCKVLKQLSILEQRRFD-DEDITADVEYL 317
>sp|Q9UI12|VATH_HUMAN Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar
proton pump H subunit) (V-ATPase 50/57 kDa subunits)
(Vacuolar proton pump subunit SFD) (VMA13) (Nef binding
protein 1) (NBP1)
Length = 483
Score = 211 bits (538), Expect = 2e-54
Identities = 113/302 (37%), Positives = 180/302 (59%), Gaps = 18/302 (5%)
Frame = +3
Query: 3 GQFISPDCYTFILKYDRAANSEARDAIIKESPHNAAKMFIFLLNKMAMEQTIQYLLTMID 182
GQ IS + FI +++ + E + +++ AK FI L+ + EQT+QY+LTM+D
Sbjct: 39 GQMISAEDCEFIQRFEMKRSPEEKQEMLQTEGSQCAKTFINLMTHICKEQTVQYILTMVD 98
Query: 183 DMLQEDKQKVEIFRLYFAKTKDSMMENFFCFLRRENKFIAYQASRIIAKIACWSSQLMET 362
DMLQE+ Q+V IF Y +K++ F L R++ F + A+RIIAK+A W +LME
Sbjct: 99 DMLQENHQRVSIFFDYARCSKNTAWPYFLPMLNRQDPFTVHMAARIIAKLAAWGKELMEG 158
Query: 363 KDLQYFLRWIQDQF------------------RFPDNEYMQTVARNLQMMLRIRQYRKVF 488
DL Y+ WI+ Q ++Y+Q VA LQ+MLR+ +YR +
Sbjct: 159 SDLNYYFNWIKTQLSSQKLRGSGVAVETGTVSSSDSSQYVQCVAGCLQLMLRVNEYRFAW 218
Query: 489 VECSGVETIVNALGGKLNTQIQYQLIFCLWCLSFDADIVIQIIKTPSLISVVSDIIRQTE 668
VE GV I+ L K Q+QYQ+IF +W L+F + + ++ ++I V+SDI++++
Sbjct: 219 VEADGVNCIMGVLSNKCGFQLQYQMIFSIWLLAFSPQ-MCEHLRRYNIIPVLSDILQESV 277
Query: 669 REKIIRVSLALFRYLLEKLSNQNQVREVALAMVQCKIMKQLELLQQKDYSHDPELTDDLA 848
+EK+ R+ LA FR LEK + + +E ALAM+QCK++KQLE L+Q+ Y D ++++D+
Sbjct: 278 KEKVTRIILAAFRNFLEKSTERETRQEYALAMIQCKVLKQLENLEQQKYD-DEDISEDIK 336
Query: 849 YL 854
+L
Sbjct: 337 FL 338
>sp|Q9TVC1|VATH_PIG Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar
proton pump H subunit) (V-ATPase 50/57 kDa subunits)
(Vacuolar proton pump subunit SFD)
Length = 483
Score = 210 bits (535), Expect = 4e-54
Identities = 111/302 (36%), Positives = 181/302 (59%), Gaps = 18/302 (5%)
Frame = +3
Query: 3 GQFISPDCYTFILKYDRAANSEARDAIIKESPHNAAKMFIFLLNKMAMEQTIQYLLTMID 182
GQ IS + FI +++ + E + +++ AK FI L+ ++ EQT+QY+LTM+D
Sbjct: 39 GQMISSEDCEFIQRFEMKRSPEEKQEMLQTEGSQCAKTFINLMTHISKEQTVQYILTMVD 98
Query: 183 DMLQEDKQKVEIFRLYFAKTKDSMMENFFCFLRRENKFIAYQASRIIAKIACWSSQLMET 362
D LQE+ Q+V IF Y ++K++ F L R++ F + A+RIIAK+A W +LME
Sbjct: 99 DTLQENHQRVSIFFDYAKRSKNTAWSYFLPMLNRQDLFTVHMAARIIAKLAAWGKELMEG 158
Query: 363 KDLQYFLRWIQDQF------------------RFPDNEYMQTVARNLQMMLRIRQYRKVF 488
DL Y+ WI+ Q ++Y+Q VA LQ+MLR+ +YR +
Sbjct: 159 SDLNYYFNWIKTQLASQKLRGSGVAVETGTVSSSDSSQYVQCVAGCLQLMLRVNEYRFAW 218
Query: 489 VECSGVETIVNALGGKLNTQIQYQLIFCLWCLSFDADIVIQIIKTPSLISVVSDIIRQTE 668
VE GV I+ L K Q+QYQ+IF +W L+F + + ++ ++I V+SDI++++
Sbjct: 219 VEADGVNCIMGVLSNKCGFQLQYQMIFSIWLLAFSPQ-MCEHLRRYNIIPVLSDILQESV 277
Query: 669 REKIIRVSLALFRYLLEKLSNQNQVREVALAMVQCKIMKQLELLQQKDYSHDPELTDDLA 848
+EK+ R+ LA FR LEK + + +E ALA++QCK++KQLE L+Q+ Y D ++++D+
Sbjct: 278 KEKVTRIILAAFRNFLEKSTERETRQEYALALIQCKVLKQLENLEQQKYD-DEDISEDIK 336
Query: 849 YL 854
+L
Sbjct: 337 FL 338
>sp|O46563|VATH_BOVIN Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar
proton pump H subunit) (V-ATPase 50/57 kDa subunits)
(Vacuolar proton pump subunit SFD)
Length = 483
Score = 207 bits (526), Expect = 4e-53
Identities = 110/302 (36%), Positives = 179/302 (59%), Gaps = 18/302 (5%)
Frame = +3
Query: 3 GQFISPDCYTFILKYDRAANSEARDAIIKESPHNAAKMFIFLLNKMAMEQTIQYLLTMID 182
GQ IS + FI +++ + E + +++ AK FI L+ ++ EQT+QY+LT++D
Sbjct: 39 GQMISSEDCEFIQRFEMKRSPEEKQEMLQTEGSQRAKTFINLMTHISKEQTVQYILTLVD 98
Query: 183 DMLQEDKQKVEIFRLYFAKTKDSMMENFFCFLRRENKFIAYQASRIIAKIACWSSQLMET 362
D LQE+ Q+V IF Y ++K++ F L R++ F + +RIIAK+A W +LME
Sbjct: 99 DTLQENHQRVSIFFDYAKRSKNTAWSYFLPMLNRQDLFTVHMTARIIAKLAAWGKELMEG 158
Query: 363 KDLQYFLRWIQDQF------------------RFPDNEYMQTVARNLQMMLRIRQYRKVF 488
DL Y+ WI+ Q ++Y+Q VA LQ+MLR+ +YR +
Sbjct: 159 SDLNYYFNWIKTQLSSQKLRGSGVTAETGTVSSSDSSQYVQCVAGCLQLMLRVNEYRFAW 218
Query: 489 VECSGVETIVNALGGKLNTQIQYQLIFCLWCLSFDADIVIQIIKTPSLISVVSDIIRQTE 668
VE GV I+ L K Q+QYQ+IF +W L+F + + ++ ++I V+SDI++++
Sbjct: 219 VEADGVNCIMGVLSNKCGFQLQYQMIFSVWLLAFSPQ-MCEHLRRYNIIPVLSDILQESV 277
Query: 669 REKIIRVSLALFRYLLEKLSNQNQVREVALAMVQCKIMKQLELLQQKDYSHDPELTDDLA 848
+EK+ R+ LA FR LEK + +E ALAM+QCK++KQLE L+Q+ Y D ++++D+
Sbjct: 278 KEKVTRIILAAFRNFLEKSVERETRQEYALAMIQCKVLKQLENLEQQKYD-DEDISEDIK 336
Query: 849 YL 854
+L
Sbjct: 337 FL 338
>sp|Q20666|VATH1_CAEEL Probable vacuolar ATP synthase subunit H 1 (V-ATPase H subunit 1)
(Vacuolar proton pump H subunit 1) (Vacuolar proton pump
subunit SFD 1)
Length = 451
Score = 145 bits (365), Expect = 2e-34
Identities = 83/287 (28%), Positives = 157/287 (54%), Gaps = 3/287 (1%)
Frame = +3
Query: 6 QFISPDCYTFILKYDRAANSEARDAIIKESPHNAAKMFIFLLNKMAMEQTIQYLLTMIDD 185
+ I+ Y FI+ Y +A N R ++ A F+ L+++++ + ++Y LT+IDD
Sbjct: 35 RMIAQSDYDFIVTYQQAENEAERSTVLSVFKEKAVYAFVHLMSQISKDDYVRYTLTLIDD 94
Query: 186 MLQEDKQKVEIFRLYFAKTKDSMMENFFCFLRRENKFIAYQASRIIAKIACWSSQLMETK 365
ML+ED + IF K S F L R++++I + I+ K+A + + +
Sbjct: 95 MLREDVTRTIIFEDVAVLLKRSPFSFFMGLLHRQDQYIVHITFSILTKMAVFGNIKLSGD 154
Query: 366 DLQYFLRWIQDQF-RFPDNEYMQTVARNLQMMLRIRQYRKVFVECSGVETIVNALGG--K 536
+L Y + +++ R +N+Y+ T R +Q + R YR FV +G +++ +AL K
Sbjct: 155 ELDYCMGSLKEAMNRGTNNDYIVTAVRCMQTLFRFDPYRVSFVNINGYDSLTHALYSTRK 214
Query: 537 LNTQIQYQLIFCLWCLSFDADIVIQIIKTPSLISVVSDIIRQTEREKIIRVSLALFRYLL 716
QIQYQ+IFC+W L+F+ ++ + +LI +S I+ ++EK+IR+ ++ R L+
Sbjct: 215 CGFQIQYQIIFCMWLLTFNGH-AAEVALSGNLIQTISGILGNCQKEKVIRIVVSTLRNLI 273
Query: 717 EKLSNQNQVREVALAMVQCKIMKQLELLQQKDYSHDPELTDDLAYLQ 857
+ ++ AL M+Q +I +L+ L+ + ++ D +L +D+ YLQ
Sbjct: 274 TSNQDVYMKKQAALQMIQNRIPTKLDHLENRKFT-DVDLVEDMVYLQ 319
>sp|Q9LX65|VATH_ARATH Probable vacuolar ATP synthase subunit H (V-ATPase H subunit)
(Vacuolar proton pump H subunit) (Vacuolar proton pump
subunit SFD)
Length = 441
Score = 70.1 bits (170), Expect = 8e-12
Identities = 56/251 (22%), Positives = 117/251 (46%), Gaps = 12/251 (4%)
Frame = +3
Query: 6 QFISPDCYTFILKYDRAANSEARDAIIKESPHNAAKMFIFLLNKMAMEQTIQYLLTMIDD 185
+ +S + +YD+ S AR ++ E +F+ +L + E+T++Y+L +I +
Sbjct: 25 KLVSAKGLQLLRRYDKKPES-ARAQLLDEDGPAYVHLFVSILRDIFKEETVEYVLALIYE 83
Query: 186 MLQEDKQKVEIFRLYFAKTKDSMMENFFCFLRRENKFIAYQASRIIAKIACWSSQLMET- 362
ML + + +F +D+ E F L + N FI ++ +I+A I +
Sbjct: 84 MLSANPTRARLFHDESLANEDT-YEPFLRLLWKGNWFIQEKSCKILAWIISARPKAGNAV 142
Query: 363 ------KDLQYFLRWIQDQFRFPDN--EYMQTVARNLQMMLRIRQYRKVFVECSGVETIV 518
L+ + W+ Q + P + + L +L+ R FV+ GV+ +V
Sbjct: 143 IGNGIDDVLKGLVEWLCAQLKQPSHPTRGVPIAISCLSSLLKEPVVRSSFVQADGVKLLV 202
Query: 519 ---NALGGKLNTQIQYQLIFCLWCLSFDADIVIQIIKTPSLISVVSDIIRQTEREKIIRV 689
+ + + Q+ Y+ C+W LS+ + I+ + T + ++++++ + +EK++RV
Sbjct: 203 PLISPASTQQSIQLLYETCLCIWLLSY-YEPAIEYLATSRTMQRLTEVVKHSTKEKVVRV 261
Query: 690 SLALFRYLLEK 722
+ FR LL K
Sbjct: 262 VILTFRNLLPK 272
>sp|O14265|VATH_SCHPO Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar
proton pump H subunit) (V-ATPase 54 kDa subunit)
Length = 450
Score = 55.8 bits (133), Expect = 2e-07
Identities = 62/261 (23%), Positives = 120/261 (45%), Gaps = 21/261 (8%)
Frame = +3
Query: 135 KMAMEQTIQYLLTMIDDMLQEDKQKVEIFRLYFAKTKDSMMEN----------FFCFLRR 284
K A E T Y + + +D V F L K D+++ + F+ FL +
Sbjct: 68 KTAEEDTTAYSNLFLKLLSMKDTPDVVNFAL--VKLADTLLNSNKFLSAFGPAFYDFLEK 125
Query: 285 ENKFIAY---QASRIIAKIACW---SSQLMETKDLQYFLRWIQDQFRFPDNEYMQTVARN 446
+ +I Y + + A++ SS K FL ++ + + +
Sbjct: 126 DESYINYLDDDSKLLFARVFALCSSSSPCSVAKAFTLFLEYLGKLMQSLNPLTRLFAVQC 185
Query: 447 LQMMLRIRQYR-KVFVE--CSG--VETIVNALGGKLNTQIQYQLIFCLWCLSFDADIVIQ 611
L +L ++ +R ++ E CS E + N++G +TQ+QY +FC W L+F++ I
Sbjct: 186 LNGVLTLKAHRYALWAENTCSFRLAELLRNSIG---DTQLQYYSLFCFWQLTFESHIAQD 242
Query: 612 IIKTPSLISVVSDIIRQTEREKIIRVSLALFRYLLEKLSNQNQVREVALAMVQCKIMKQL 791
I K LI ++ IIR + K+ R+ LA+ L++K ++ M+ + K +
Sbjct: 243 INKRFDLIKLLVQIIRSDTKTKVYRLVLAILVNLIDKAP-----KDTISTMLLEHVDKAV 297
Query: 792 ELLQQKDYSHDPELTDDLAYL 854
+LLQ++ ++ D ++T+ L ++
Sbjct: 298 QLLQKRKWA-DEDITNYLDFI 317
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,814,631
Number of Sequences: 369166
Number of extensions: 1922444
Number of successful extensions: 4559
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4541
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8982382310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)