Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_I08
(532 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P00889|CISY_PIG Citrate synthase, mitochondrial precursor 206 4e-53
sp|O75390|CISY_HUMAN Citrate synthase, mitochondrial precursor 203 2e-52
sp|P23007|CISY_CHICK Citrate synthase, mitochondrial 203 2e-52
sp|Q9CZU6|CISY_MOUSE Citrate synthase, mitochondrial precursor 202 3e-52
sp|Q9M1D3|CISY5_ARATH Citrate synthase 5, mitochondrial pre... 195 5e-50
sp|P00890|CISY1_YEAST Citrate synthase, mitochondrial precu... 194 9e-50
sp|P34575|CISY_CAEEL Probable citrate synthase, mitochondri... 193 2e-49
sp|P51044|CISY_ASPNG Citrate synthase, mitochondrial precursor 191 7e-49
sp|Q10306|CISY_SCHPO Probable citrate synthase, mitochondri... 191 9e-49
sp|P34085|CISY_NEUCR Citrate synthase, mitochondrial precursor 191 9e-49
>sp|P00889|CISY_PIG Citrate synthase, mitochondrial precursor
Length = 464
Score = 206 bits (523), Expect = 4e-53
Identities = 97/126 (76%), Positives = 112/126 (88%)
Frame = +2
Query: 2 LKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIA 181
L +G+VVPGYGHAVLRKTDPRY CQREFALKHLP P+FK+V+QLY+IVP+VL ++ K
Sbjct: 336 LNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAK 395
Query: 182 NPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTD 361
NP+PNVDAHSGVLLQYYGMTE NYYTVLFG+SRALG+L+ LIW RALG P+ERPKS STD
Sbjct: 396 NPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTD 455
Query: 362 KLIELV 379
LI+LV
Sbjct: 456 GLIKLV 461
>sp|O75390|CISY_HUMAN Citrate synthase, mitochondrial precursor
Length = 466
Score = 203 bits (516), Expect = 2e-52
Identities = 97/131 (74%), Positives = 115/131 (87%), Gaps = 1/131 (0%)
Frame = +2
Query: 2 LKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIA 181
L +G+VVPGYGHAVLRKTDPRY CQREFALKHLP+ P+FK+V+QLY+IVP+VL ++ K
Sbjct: 336 LNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPMFKLVAQLYKIVPNVLLEQGKAK 395
Query: 182 NPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTD 361
NP+PNVDAHSGVLLQYYGMTE NYYTVLFG+SRALG+L+ LIW RALG P+ERPKS ST+
Sbjct: 396 NPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTE 455
Query: 362 KLIELV-RKSG 391
L++ V KSG
Sbjct: 456 GLMKFVDSKSG 466
>sp|P23007|CISY_CHICK Citrate synthase, mitochondrial
Length = 433
Score = 203 bits (516), Expect = 2e-52
Identities = 96/125 (76%), Positives = 110/125 (88%)
Frame = +2
Query: 2 LKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIA 181
L +G+VVPGYGHAVLRKTDPRY CQREFALKHLP P+FK+V+QLY+IVP+VL ++ A
Sbjct: 309 LNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPGDPMFKLVAQLYKIVPNVLLEQGAAA 368
Query: 182 NPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTD 361
NP+PNVDAHSGVLLQYYGMTE NYYTVLFG+SRALG+L+ LIW RALG P+ERPKS STD
Sbjct: 369 NPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTD 428
Query: 362 KLIEL 376
LI L
Sbjct: 429 GLIAL 433
>sp|Q9CZU6|CISY_MOUSE Citrate synthase, mitochondrial precursor
Length = 464
Score = 202 bits (515), Expect = 3e-52
Identities = 94/126 (74%), Positives = 111/126 (88%)
Frame = +2
Query: 2 LKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIA 181
L +G+VVPGYGHAVLRKTDPRY CQREFALKHLP P+FK+V+QLY+IVP++L ++ K
Sbjct: 336 LNSGRVVPGYGHAVLRKTDPRYSCQREFALKHLPKDPMFKLVAQLYKIVPNILLEQGKAK 395
Query: 182 NPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTD 361
NP+PNVDAHSGVLLQYYGMTE NYYTVLFG+SRALG+L+ LIW RALG P+ERPKS STD
Sbjct: 396 NPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTD 455
Query: 362 KLIELV 379
L++ V
Sbjct: 456 GLMKFV 461
>sp|Q9M1D3|CISY5_ARATH Citrate synthase 5, mitochondrial precursor
Length = 433
Score = 195 bits (496), Expect = 5e-50
Identities = 90/127 (70%), Positives = 107/127 (84%)
Frame = +2
Query: 2 LKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIA 181
L +G+VVPGYGH VLRKTDPRY+CQREFALKHLPD PLF++VS+LY++VP +L + K+
Sbjct: 304 LNSGKVVPGYGHGVLRKTDPRYICQREFALKHLPDDPLFQLVSKLYEVVPPILTELGKVK 363
Query: 182 NPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTD 361
NP+PNVDAHSGVLL YYG+TE YYTVLFG+SR+LGI S LIWDRALGLP+ERPKS + D
Sbjct: 364 NPWPNVDAHSGVLLNYYGLTEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVNMD 423
Query: 362 KLIELVR 382
L R
Sbjct: 424 WLDNFTR 430
>sp|P00890|CISY1_YEAST Citrate synthase, mitochondrial precursor
Length = 479
Score = 194 bits (494), Expect = 9e-50
Identities = 91/128 (71%), Positives = 108/128 (84%)
Frame = +2
Query: 2 LKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIA 181
L AG+VVPGYGHAVLRKTDPRY QREFALKH PDY LFK+VS +Y++ P VL K K
Sbjct: 347 LNAGRVVPGYGHAVLRKTDPRYTAQREFALKHFPDYELFKLVSTIYEVAPGVLTKHGKTK 406
Query: 182 NPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTD 361
NP+PNVD+HSGVLLQYYG+TE ++YTVLFG++RA+G+L LI DRA+G PIERPKSFST+
Sbjct: 407 NPWPNVDSHSGVLLQYYGLTEASFYTVLFGVARAIGVLPQLIIDRAVGAPIERPKSFSTE 466
Query: 362 KLIELVRK 385
K ELV+K
Sbjct: 467 KYKELVKK 474
>sp|P34575|CISY_CAEEL Probable citrate synthase, mitochondrial precursor
Length = 468
Score = 193 bits (491), Expect = 2e-49
Identities = 92/125 (73%), Positives = 108/125 (86%)
Frame = +2
Query: 2 LKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIA 181
LK+GQVVPGYGHAVLRKTDPRY CQREFALKHLP+ LFK+VS LY+I P +L ++ K
Sbjct: 338 LKSGQVVPGYGHAVLRKTDPRYECQREFALKHLPNDDLFKLVSTLYKITPGILLEQGKAK 397
Query: 182 NPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTD 361
NP+PNVD+HSGVLLQY+GMTE ++YTVLFG+SRALG LS LIW R +GLP+ERPKS STD
Sbjct: 398 NPWPNVDSHSGVLLQYFGMTEMSFYTVLFGVSRALGCLSQLIWARGMGLPLERPKSHSTD 457
Query: 362 KLIEL 376
LI+L
Sbjct: 458 GLIKL 462
>sp|P51044|CISY_ASPNG Citrate synthase, mitochondrial precursor
Length = 475
Score = 191 bits (486), Expect = 7e-49
Identities = 91/120 (75%), Positives = 104/120 (86%)
Frame = +2
Query: 2 LKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIA 181
L AGQVVPGYGHAVLRKTDPRY+ QREFAL+ LPD P+FK+VSQ+Y+I P VL + K
Sbjct: 345 LNAGQVVPGYGHAVLRKTDPRYVSQREFALRKLPDDPMFKLVSQVYKIAPGVLTEHGKTK 404
Query: 182 NPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTD 361
NP+PNVDAHSGVLLQYYG+TE NYYTVLFG+SRALG+L LI DRALG PIERPKS+ST+
Sbjct: 405 NPYPNVDAHSGVLLQYYGLTEANYYTVLFGVSRALGVLPQLIIDRALGAPIERPKSYSTE 464
>sp|Q10306|CISY_SCHPO Probable citrate synthase, mitochondrial precursor
Length = 473
Score = 191 bits (485), Expect = 9e-49
Identities = 89/126 (70%), Positives = 108/126 (85%)
Frame = +2
Query: 2 LKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIA 181
L +G+VVPGYGHAVLRKTDPRY QREFAL+HLP P+F++VS+LY+IVP VL + K
Sbjct: 345 LNSGRVVPGYGHAVLRKTDPRYTAQREFALEHLPKDPMFQLVSRLYEIVPGVLTEHGKTK 404
Query: 182 NPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTD 361
NP+PNVD+HSGVLLQYYG+ E ++YTVLFG+SR LG+ S LIWDRALGLPIERPKSFST+
Sbjct: 405 NPYPNVDSHSGVLLQYYGLKEQSFYTVLFGVSRTLGVASQLIWDRALGLPIERPKSFSTE 464
Query: 362 KLIELV 379
L ++V
Sbjct: 465 ALKKMV 470
>sp|P34085|CISY_NEUCR Citrate synthase, mitochondrial precursor
Length = 469
Score = 191 bits (485), Expect = 9e-49
Identities = 89/128 (69%), Positives = 109/128 (85%)
Frame = +2
Query: 2 LKAGQVVPGYGHAVLRKTDPRYMCQREFALKHLPDYPLFKVVSQLYQIVPDVLGKKSKIA 181
L AG+VVPGYGHAVLRKTDPRY QR+FA +HLP+ P+F++VSQ+Y+I P VL + K
Sbjct: 341 LNAGRVVPGYGHAVLRKTDPRYSAQRKFAQEHLPEDPMFQLVSQVYKIAPKVLTEHGKTK 400
Query: 182 NPFPNVDAHSGVLLQYYGMTETNYYTVLFGISRALGILSSLIWDRALGLPIERPKSFSTD 361
NP+PNVDAHSGVLLQ+YG+TE NYYTVLFG+SRA+G+L LI DRA+G PIERPKS+STD
Sbjct: 401 NPYPNVDAHSGVLLQHYGLTEANYYTVLFGVSRAIGVLPQLIIDRAVGAPIERPKSYSTD 460
Query: 362 KLIELVRK 385
K IE+ +K
Sbjct: 461 KWIEICKK 468
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,246,157
Number of Sequences: 369166
Number of extensions: 1087738
Number of successful extensions: 2897
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2853
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3600891075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)