Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_H19
(319 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0 64 8e-11
sp|O24573|RLA0_MAIZE 60S acidic ribosomal protein P0 64 8e-11
sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0 64 8e-11
sp|O04204|RLA0A_ARATH 60S acidic ribosomal protein P0-A 62 3e-10
sp|P41095|RLA0_ORYSA 60S acidic ribosomal protein P0 62 5e-10
sp|P57691|RLA0C_ARATH 60S acidic ribosomal protein P0-C 60 2e-09
sp|Q42112|RLA0B_ARATH 60S acidic ribosomal protein P0-B 60 2e-09
sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(... 60 2e-09
sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E) 58 8e-09
sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E) 58 8e-09
>sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0
Length = 312
Score = 64.3 bits (155), Expect = 8e-11
Identities = 30/56 (53%), Positives = 44/56 (78%)
Frame = +2
Query: 11 QKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 178
+ VA+VSLA+N PTLASV H +AN ++ ++G++ VTD + KEAE IK ++ DP+KF
Sbjct: 220 RNVASVSLAVNYPTLASVAHSLANGLQNMLGVAAVTDVSFKEAETIKAFIADPSKF 275
>sp|O24573|RLA0_MAIZE 60S acidic ribosomal protein P0
Length = 319
Score = 64.3 bits (155), Expect = 8e-11
Identities = 30/54 (55%), Positives = 42/54 (77%)
Frame = +2
Query: 17 VAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 178
VA++SLA++ PTLA+VPH+ N K V+ ++V TDY+ A+ IKEYLKDP+KF
Sbjct: 225 VASLSLAISYPTLAAVPHMFINGYKNVLAVAVETDYSYPHADKIKEYLKDPSKF 278
>sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0
Length = 320
Score = 64.3 bits (155), Expect = 8e-11
Identities = 28/54 (51%), Positives = 41/54 (75%)
Frame = +2
Query: 17 VAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 178
V ++SLA++ PTLA+ PH+ N K V+ ++V TDY+ EA+ +KEYLKDP+KF
Sbjct: 225 VTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKF 278
>sp|O04204|RLA0A_ARATH 60S acidic ribosomal protein P0-A
Length = 317
Score = 62.4 bits (150), Expect = 3e-10
Identities = 25/54 (46%), Positives = 41/54 (75%)
Frame = +2
Query: 17 VAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 178
+ A+SLA++ PT+A+ PH+ N K V+ +++ T+Y+ +AE +KE+LKDPTKF
Sbjct: 225 ITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKF 278
>sp|P41095|RLA0_ORYSA 60S acidic ribosomal protein P0
Length = 319
Score = 61.6 bits (148), Expect = 5e-10
Identities = 28/54 (51%), Positives = 41/54 (75%)
Frame = +2
Query: 17 VAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 178
VA+VSLA++ PT+A+ PH+ N K V+ ++V T+Y+ A+ IKEYLKDP+KF
Sbjct: 225 VASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKF 278
>sp|P57691|RLA0C_ARATH 60S acidic ribosomal protein P0-C
Length = 323
Score = 60.1 bits (144), Expect = 2e-09
Identities = 25/54 (46%), Positives = 39/54 (72%)
Frame = +2
Query: 17 VAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 178
V +++LA++ PTLA+ PH+ N K + ++V TDY +AE +KE+LKDP+KF
Sbjct: 224 VTSLALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277
>sp|Q42112|RLA0B_ARATH 60S acidic ribosomal protein P0-B
Length = 320
Score = 60.1 bits (144), Expect = 2e-09
Identities = 25/54 (46%), Positives = 39/54 (72%)
Frame = +2
Query: 17 VAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 178
V +++LA++ PTLA+ PH+ N K + ++V T+Y +AE +KEYLKDP+KF
Sbjct: 224 VTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277
>sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(apurinic or apyrimidinic
site) lyase) (Apurinic-apyrimidinic endonuclease)
Length = 317
Score = 59.7 bits (143), Expect = 2e-09
Identities = 27/59 (45%), Positives = 39/59 (66%)
Frame = +2
Query: 2 ESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 178
+ +AAV L++ PT+AS PH IAN K ++ ++ T+ KEA IKEY+KDP+KF
Sbjct: 217 QGVANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKF 275
>sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 57.8 bits (138), Expect = 8e-09
Identities = 29/59 (49%), Positives = 37/59 (62%)
Frame = +2
Query: 2 ESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 178
E + VA+V L + PT+ASVPH I N K V+ LSV TDY AE +K +L DP+ F
Sbjct: 217 EGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
>sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 57.8 bits (138), Expect = 8e-09
Identities = 29/59 (49%), Positives = 37/59 (62%)
Frame = +2
Query: 2 ESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 178
E + VA+V L + PT+ASVPH I N K V+ LSV TDY AE +K +L DP+ F
Sbjct: 217 EGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,365,492
Number of Sequences: 369166
Number of extensions: 331612
Number of successful extensions: 1008
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 68,354,980
effective HSP length: 74
effective length of database: 54,684,590
effective search space used: 1695222290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)