Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_H17
(534 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18687|CH60_CRIGR 60 kDa heat shock protein, mitochondri... 192 3e-49
sp|P63039|CH60_RAT 60 kDa heat shock protein, mitochondrial... 192 4e-49
sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondri... 188 8e-48
sp|O02649|CH60_DROME 60 kDa heat shock protein, mitochondri... 184 1e-46
sp|Q5NVM5|CH60_PONPY 60 kDa heat shock protein, mitochondri... 183 2e-46
sp|P25420|CH63_HELVI 63 kDa chaperonin, mitochondrial precu... 182 6e-46
sp|Q9VMN5|CH60C_DROME Probable 60 kDa heat shock protein ho... 178 6e-45
sp|Q9VPS5|CH60B_DROME Probable 60 kDa heat shock protein ho... 166 3e-41
sp|P29197|CH60_ARATH Chaperonin CPN60, mitochondrial precur... 155 4e-38
sp|Q05046|CH62_CUCMA Chaperonin CPN60-2, mitochondrial prec... 155 4e-38
>sp|P18687|CH60_CRIGR 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1)
Length = 573
Score = 192 bits (489), Expect = 3e-49
Identities = 98/135 (72%), Positives = 114/135 (84%)
Frame = +3
Query: 3 RYTDALNATRAAVEEGIVPGGGTALIRCIPGLESLKPKTEDQKIGIEIVRRALTTPCYTI 182
R TDALNATRAAVEEGIV GGG AL+RCIP L+SLKP EDQKIGIEI++RAL P TI
Sbjct: 420 RVTDALNATRAAVEEGIVLGGGCALLRCIPALDSLKPSNEDQKIGIEIIKRALKIPAMTI 479
Query: 183 AHNAGVNASVVVEKVLTMENVMGYDAMNDEYVNMIEKGIIDPTKVVRTALVDASGVASLL 362
A NAGV S++VEK+L + +GYDAM ++VNM+EKGIIDPTKVVRTAL+DA+GVASLL
Sbjct: 480 AKNAGVEGSLIVEKILQSSSEIGYDAMLGDFVNMVEKGIIDPTKVVRTALLDAAGVASLL 539
Query: 363 TTAETVVTEIIKDDK 407
TTAE VVTEI K++K
Sbjct: 540 TTAEAVVTEIPKEEK 554
>sp|P63039|CH60_RAT 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1) (HSP-65)
sp|P63038|CH60_MOUSE 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1) (HSP-65)
Length = 573
Score = 192 bits (488), Expect = 4e-49
Identities = 98/135 (72%), Positives = 114/135 (84%)
Frame = +3
Query: 3 RYTDALNATRAAVEEGIVPGGGTALIRCIPGLESLKPKTEDQKIGIEIVRRALTTPCYTI 182
R TDALNATRAAVEEGIV GGG AL+RCIP L+SLKP EDQKIGIEI++RAL P TI
Sbjct: 420 RVTDALNATRAAVEEGIVLGGGCALLRCIPALDSLKPANEDQKIGIEIIKRALKIPAMTI 479
Query: 183 AHNAGVNASVVVEKVLTMENVMGYDAMNDEYVNMIEKGIIDPTKVVRTALVDASGVASLL 362
A NAGV S++VEK+L + +GYDAM ++VNM+EKGIIDPTKVVRTAL+DA+GVASLL
Sbjct: 480 AKNAGVEGSLIVEKILQSSSEVGYDAMLGDFVNMVEKGIIDPTKVVRTALLDAAGVASLL 539
Query: 363 TTAETVVTEIIKDDK 407
TTAE VVTEI K++K
Sbjct: 540 TTAEAVVTEIPKEEK 554
>sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1) (P60 lymphocyte
protein) (HuCHA60)
Length = 573
Score = 188 bits (477), Expect = 8e-48
Identities = 95/135 (70%), Positives = 112/135 (82%)
Frame = +3
Query: 3 RYTDALNATRAAVEEGIVPGGGTALIRCIPGLESLKPKTEDQKIGIEIVRRALTTPCYTI 182
R TDALNATRAAVEEGIV GGG AL+RCIP L+SL P EDQKIGIEI++R L P TI
Sbjct: 420 RVTDALNATRAAVEEGIVLGGGCALLRCIPALDSLTPANEDQKIGIEIIKRTLKIPAMTI 479
Query: 183 AHNAGVNASVVVEKVLTMENVMGYDAMNDEYVNMIEKGIIDPTKVVRTALVDASGVASLL 362
A NAGV S++VEK++ + +GYDAM ++VNM+EKGIIDPTKVVRTAL+DA+GVASLL
Sbjct: 480 AKNAGVEGSLIVEKIMQSSSEVGYDAMAGDFVNMVEKGIIDPTKVVRTALLDAAGVASLL 539
Query: 363 TTAETVVTEIIKDDK 407
TTAE VVTEI K++K
Sbjct: 540 TTAEVVVTEIPKEEK 554
>sp|O02649|CH60_DROME 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1)
Length = 573
Score = 184 bits (467), Expect = 1e-46
Identities = 97/138 (70%), Positives = 109/138 (78%)
Frame = +3
Query: 3 RYTDALNATRAAVEEGIVPGGGTALIRCIPGLESLKPKTEDQKIGIEIVRRALTTPCYTI 182
R DALNATRAAVEEGIVPGGGTAL+RCI LE ++ EDQK+G+EIVRRAL PC TI
Sbjct: 416 RVHDALNATRAAVEEGIVPGGGTALLRCIEKLEGVETTNEDQKLGVEIVRRALRMPCMTI 475
Query: 183 AHNAGVNASVVVEKVLTMENVMGYDAMNDEYVNMIEKGIIDPTKVVRTALVDASGVASLL 362
A NAGV+ ++VV KV GYDA+ EY N+IEKGIIDPTKVVRTA+ DASGVASLL
Sbjct: 476 AKNAGVDGAMVVAKVENQAGDYGYDALKGEYGNLIEKGIIDPTKVVRTAITDASGVASLL 535
Query: 363 TTAETVVTEIIKDDKASA 416
TTAE VVTEI K+D A A
Sbjct: 536 TTAEAVVTEIPKEDGAPA 553
>sp|Q5NVM5|CH60_PONPY 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
Length = 573
Score = 183 bits (465), Expect = 2e-46
Identities = 93/135 (68%), Positives = 110/135 (81%)
Frame = +3
Query: 3 RYTDALNATRAAVEEGIVPGGGTALIRCIPGLESLKPKTEDQKIGIEIVRRALTTPCYTI 182
R TDALNATRAA EEGIV GGG AL+RCIP L+SL P EDQKIGIEI++R L P TI
Sbjct: 420 RVTDALNATRAAAEEGIVLGGGCALLRCIPALDSLTPANEDQKIGIEIIKRTLKIPAMTI 479
Query: 183 AHNAGVNASVVVEKVLTMENVMGYDAMNDEYVNMIEKGIIDPTKVVRTALVDASGVASLL 362
A NAGV S++VEK++ + +GYDAM ++VNM+ KGIIDPTKVVRTAL+DA+GVASLL
Sbjct: 480 AKNAGVEGSLIVEKIMQSSSEVGYDAMVGDFVNMVGKGIIDPTKVVRTALLDAAGVASLL 539
Query: 363 TTAETVVTEIIKDDK 407
TTAE VVTEI K++K
Sbjct: 540 TTAEVVVTEIPKEEK 554
>sp|P25420|CH63_HELVI 63 kDa chaperonin, mitochondrial precursor (p63)
Length = 569
Score = 182 bits (461), Expect = 6e-46
Identities = 92/132 (69%), Positives = 107/132 (81%)
Frame = +3
Query: 3 RYTDALNATRAAVEEGIVPGGGTALIRCIPGLESLKPKTEDQKIGIEIVRRALTTPCYTI 182
R DALNATRAAVEEGIVPGGG AL+RCIP L+ LKP +DQ+IG+ I+++AL TPC TI
Sbjct: 422 RVNDALNATRAAVEEGIVPGGGAALLRCIPALDLLKPANKDQEIGVSIIKKALRTPCITI 481
Query: 183 AHNAGVNASVVVEKVLTMENVMGYDAMNDEYVNMIEKGIIDPTKVVRTALVDASGVASLL 362
A NAG + +VVV KV M GYDA+N+EYVNMIEKGIIDPTKVVR AL DASGVASLL
Sbjct: 482 ASNAGFDGAVVVSKVEDMGPEYGYDALNNEYVNMIEKGIIDPTKVVRRALTDASGVASLL 541
Query: 363 TTAETVVTEIIK 398
TTAE V+ ++ K
Sbjct: 542 TTAEAVICDMPK 553
>sp|Q9VMN5|CH60C_DROME Probable 60 kDa heat shock protein homolog 2, mitochondrial
precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat
shock protein 60) (HSP-60)
Length = 576
Score = 178 bits (452), Expect = 6e-45
Identities = 93/138 (67%), Positives = 109/138 (78%)
Frame = +3
Query: 3 RYTDALNATRAAVEEGIVPGGGTALIRCIPGLESLKPKTEDQKIGIEIVRRALTTPCYTI 182
R DALNATRAAVEEGIVPGGGTAL+RCI L LK EDQ +GIEI+RRAL PC TI
Sbjct: 420 RVIDALNATRAAVEEGIVPGGGTALLRCIQKLNDLKGANEDQNMGIEIIRRALRMPCLTI 479
Query: 183 AHNAGVNASVVVEKVLTMENVMGYDAMNDEYVNMIEKGIIDPTKVVRTALVDASGVASLL 362
A NAGV+ ++VV KV ++ GYDA+ EY NMIE+GIIDPTKVVRTA+ DA+GVASLL
Sbjct: 480 AKNAGVDGAMVVAKVEILDGDYGYDALKGEYGNMIERGIIDPTKVVRTAISDAAGVASLL 539
Query: 363 TTAETVVTEIIKDDKASA 416
TTAE VVTE+ ++ A+A
Sbjct: 540 TTAEAVVTELPLEEAAAA 557
>sp|Q9VPS5|CH60B_DROME Probable 60 kDa heat shock protein homolog 1, mitochondrial
precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat
shock protein 60) (HSP-60)
Length = 648
Score = 166 bits (420), Expect = 3e-41
Identities = 84/137 (61%), Positives = 102/137 (74%)
Frame = +3
Query: 3 RYTDALNATRAAVEEGIVPGGGTALIRCIPGLESLKPKTEDQKIGIEIVRRALTTPCYTI 182
R DALNATRAA+EEGIVPGGGTA +RCIP L+ LK ++ D + G++IV AL PC TI
Sbjct: 415 RVVDALNATRAAIEEGIVPGGGTAFLRCIPYLQELKTESADLQKGVDIVCNALRMPCQTI 474
Query: 183 AHNAGVNASVVVEKVLTMENVMGYDAMNDEYVNMIEKGIIDPTKVVRTALVDASGVASLL 362
A NAGV+ +VV KVL GYDAM DEY ++EKGIIDPTKV+RTA+ DA+GVASLL
Sbjct: 475 AQNAGVDGPMVVAKVLNGSEDYGYDAMGDEYCRLVEKGIIDPTKVLRTAITDAAGVASLL 534
Query: 363 TTAETVVTEIIKDDKAS 413
+T E V+T+ DD S
Sbjct: 535 STTEVVITDSRNDDLLS 551
>sp|P29197|CH60_ARATH Chaperonin CPN60, mitochondrial precursor (HSP60)
Length = 577
Score = 155 bits (393), Expect = 4e-38
Identities = 81/138 (58%), Positives = 102/138 (73%), Gaps = 1/138 (0%)
Frame = +3
Query: 3 RYTDALNATRAAVEEGIVPGGGTALIRCIPGLESLKPKTEDQKIGIEIVRRALTTPCYTI 182
R TDALNAT+AAVEEGI+PGGG AL+ LE L DQKIG++I++ AL TP YTI
Sbjct: 425 RVTDALNATKAAVEEGILPGGGVALLYAARELEKLPTANFDQKIGVQIIQNALKTPVYTI 484
Query: 183 AHNAGVNASVVVEKVLTMENV-MGYDAMNDEYVNMIEKGIIDPTKVVRTALVDASGVASL 359
A NAGV +V+V K+L +N +GYDA EYV+M++ GIIDP KV+RTALVDA+ V+SL
Sbjct: 485 ASNAGVEGAVIVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSL 544
Query: 360 LTTAETVVTEIIKDDKAS 413
LTT E VV ++ KD+ S
Sbjct: 545 LTTTEAVVVDLPKDESES 562
>sp|Q05046|CH62_CUCMA Chaperonin CPN60-2, mitochondrial precursor (HSP60-2)
Length = 575
Score = 155 bits (393), Expect = 4e-38
Identities = 81/136 (59%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Frame = +3
Query: 3 RYTDALNATRAAVEEGIVPGGGTALIRCIPGLESLKPKTEDQKIGIEIVRRALTTPCYTI 182
R TDALNAT+AAVEEGIVPGGG AL+ L+ L DQKIG++I++ AL TP +TI
Sbjct: 426 RVTDALNATKAAVEEGIVPGGGVALLYASKELDKLSTANFDQKIGVQIIQNALKTPVHTI 485
Query: 183 AHNAGVNASVVVEKVLTMENV-MGYDAMNDEYVNMIEKGIIDPTKVVRTALVDASGVASL 359
A NAGV +VVV K+L +N +GYDA EYV+MI+ GIIDP KV+RTALVDA+ V+SL
Sbjct: 486 ASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAASVSSL 545
Query: 360 LTTAETVVTEIIKDDK 407
+TT E +V E+ KD+K
Sbjct: 546 MTTTEAIVVELPKDEK 561
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,772,797
Number of Sequences: 369166
Number of extensions: 755965
Number of successful extensions: 3027
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2732
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3650218350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)