Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_H15
(257 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46872|KRP85_STRPU Kinesin-II 85 kDa subunit (KRP-85/95 ... 48 8e-06
sp|Q9Y496|KIF3A_HUMAN Kinesin-like protein KIF3A (Microtubu... 44 1e-04
sp|P28741|KIF3A_MOUSE Kinesin-like protein KIF3A (Microtubu... 44 1e-04
sp|P46871|KRP95_STRPU Kinesin-II 95 kDa subunit (KRP-85/95 ... 41 7e-04
sp|Q9UKV0|HDAC9_HUMAN Histone deacetylase 9 (HD9) (HD7B) (HD7) 32 0.45
sp|Q99N13|HDAC9_MOUSE Histone deacetylase 9 (HD9) (HD7B) (H... 32 0.45
sp|O14782|KIF3C_HUMAN Kinesin-like protein KIF3C 31 0.76
sp|P09010|LAML1_XENLA Lamin L(I) 30 1.7
sp|O55165|KIF3C_RAT Kinesin-like protein KIF3C 30 1.7
sp|P20700|LAM1_HUMAN Lamin B1 30 2.2
>sp|P46872|KRP85_STRPU Kinesin-II 85 kDa subunit (KRP-85/95 85 kDa subunit)
Length = 699
Score = 47.8 bits (112), Expect = 8e-06
Identities = 19/49 (38%), Positives = 38/49 (77%)
Frame = +2
Query: 2 QQKDMVAEEKDRVQQDLVEKENKLAKARQEQQMLRNRMTDLQRKIIVGG 148
++KDMV E+++ V ++L +E++L KA+ +Q++L ++ +Q+K+IVGG
Sbjct: 433 EKKDMVEEDRNTVHRELQRRESELHKAQDDQKILNEKLNAIQKKLIVGG 481
>sp|Q9Y496|KIF3A_HUMAN Kinesin-like protein KIF3A (Microtubule plus end-directed kinesin
motor 3A)
Length = 702
Score = 43.9 bits (102), Expect = 1e-04
Identities = 19/46 (41%), Positives = 33/46 (71%)
Frame = +2
Query: 11 DMVAEEKDRVQQDLVEKENKLAKARQEQQMLRNRMTDLQRKIIVGG 148
DM EE+++ + +L ++E L KA+QE Q L +++ L++K+IVGG
Sbjct: 441 DMEEEERNKARAELEKREKDLLKAQQEHQSLLEKLSALEKKVIVGG 486
>sp|P28741|KIF3A_MOUSE Kinesin-like protein KIF3A (Microtubule plus end-directed kinesin
motor 3A)
Length = 701
Score = 43.5 bits (101), Expect = 1e-04
Identities = 19/46 (41%), Positives = 32/46 (69%)
Frame = +2
Query: 11 DMVAEEKDRVQQDLVEKENKLAKARQEQQMLRNRMTDLQRKIIVGG 148
DM EE+++ + +L +E L KA+QE Q L +++ L++K+IVGG
Sbjct: 440 DMEEEERNKARAELERREKDLLKAQQEHQSLLEKLSALEKKVIVGG 485
>sp|P46871|KRP95_STRPU Kinesin-II 95 kDa subunit (KRP-85/95 95 kDa subunit)
Length = 742
Score = 41.2 bits (95), Expect = 7e-04
Identities = 19/83 (22%), Positives = 41/83 (49%)
Frame = +2
Query: 8 KDMVAEEKDRVQQDLVEKENKLAKARQEQQMLRNRMTDLQRKIIVGGXXXXXXXXXXXXX 187
+ M+AEEK ++ ++ +++ ++ K Q+++ML ++ ++ K++VGG
Sbjct: 429 QSMIAEEKQKLLSEVQKRQGEIKKEHQQKEMLEGKIKAMESKLLVGGKSIVDHTNEQQRK 488
Query: 188 XXXXXXXXXHHKQTEVDMRKKLQ 256
K E DM +KL+
Sbjct: 489 IEEQRLLLAEEKNRERDMERKLK 511
>sp|Q9UKV0|HDAC9_HUMAN Histone deacetylase 9 (HD9) (HD7B) (HD7)
Length = 1011
Score = 32.0 bits (71), Expect = 0.45
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2
Query: 41 QQDLVEKENKLAKARQEQQMLRNR 112
QQ+L+EKE KL + RQEQ++ R+R
Sbjct: 96 QQELLEKEQKLEQQRQEQEVERHR 119
>sp|Q99N13|HDAC9_MOUSE Histone deacetylase 9 (HD9) (HD7B) (Histone deacetylase-related
protein) (MEF2-interacting transcription repressor MITR)
Length = 588
Score = 32.0 bits (71), Expect = 0.45
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2
Query: 41 QQDLVEKENKLAKARQEQQMLRNR 112
QQ+L+EKE KL + RQEQ++ R+R
Sbjct: 96 QQELLEKEQKLEQQRQEQEVERHR 119
>sp|O14782|KIF3C_HUMAN Kinesin-like protein KIF3C
Length = 793
Score = 31.2 bits (69), Expect = 0.76
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 14/63 (22%)
Frame = +2
Query: 2 QQKDMVAEEKDRVQQD-----------LVEKENKLAKARQEQQ---MLRNRMTDLQRKII 139
+QK+ + EEK +Q D L EKE L R+EQQ +L + ++ K++
Sbjct: 463 EQKERLEEEKAAIQDDRSLVSEEKQKLLEEKEKMLEDLRREQQATELLAAKYKAMESKLL 522
Query: 140 VGG 148
+GG
Sbjct: 523 IGG 525
>sp|P09010|LAML1_XENLA Lamin L(I)
Length = 583
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 8 KDMVAEEKDRVQQDLVEKENKLAKARQEQQMLRN 109
+DM+A+EKD ++ L E+E ++A R + Q N
Sbjct: 325 EDMLAKEKDNSRKMLAEREREMADIRDQMQQQLN 358
>sp|O55165|KIF3C_RAT Kinesin-like protein KIF3C
Length = 796
Score = 30.0 bits (66), Expect = 1.7
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 14/63 (22%)
Frame = +2
Query: 2 QQKDMVAEEKDRVQQD-----------LVEKENKLAKARQEQQ---MLRNRMTDLQRKII 139
+QK+ + EEK +Q D L EKE L ++EQQ +L + ++ K++
Sbjct: 465 EQKERLEEEKAAIQDDRSLVSEEKQKLLEEKEKMLEDLKREQQATELLAAKYKAMESKLL 524
Query: 140 VGG 148
+GG
Sbjct: 525 IGG 527
>sp|P20700|LAM1_HUMAN Lamin B1
Length = 586
Score = 29.6 bits (65), Expect = 2.2
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +2
Query: 8 KDMVAEEKDRVQQDLVEKENKLAKARQEQQMLRN 109
+D++A+EKD ++ L +KE ++A+ R + Q N
Sbjct: 325 EDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLN 358
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,511,533
Number of Sequences: 369166
Number of extensions: 346650
Number of successful extensions: 1592
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1585
length of database: 68,354,980
effective HSP length: 56
effective length of database: 58,009,820
effective search space used: 1682284780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)