Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_H11
(915 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34252|SLD2_YEAST DNA replication regulator SLD2 (DNA re... 33 0.85
sp|P37526|YAAC_BACSU Hypothetical protein yaaC 33 1.5
sp|P21325|RT67_ECOLI Retron EC67 protein (ORF4-EC67 RT) [In... 30 9.4
sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regener... 30 9.4
sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1 >gi|51316981... 30 9.4
sp|Q8NYF5|ESAA_STAAW Protein esaA >gi|68565480|sp|Q6GCI9|ES... 30 9.4
sp|Q6GK28|ESAA_STAAR Protein esaA 30 9.4
sp|P0C049|ESAA_STAAU Protein esaA >gi|68565538|sp|Q99WU3|ES... 30 9.4
sp|P51643|ARF1_XENLA ADP-ribosylation factor 1 30 9.4
sp|Q5HJ90|ESAA_STAAC Protein esaA 30 9.4
>sp|P34252|SLD2_YEAST DNA replication regulator SLD2 (DNA replication and checkpoint
protein 1)
Length = 453
Score = 33.5 bits (75), Expect = 0.85
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +2
Query: 167 PNKIIDKIKNFSMRHNNSTSSPAVTSGHNRYSSLMEIDAEESTISPPLVQQRP 325
P + + NF M + +ST +P + NR L+EI TI+PPL +P
Sbjct: 148 PISSVKRQLNFQMLNASSTRTPTSSPCKNRNGKLVEIKKCSPTINPPLESGKP 200
>sp|P37526|YAAC_BACSU Hypothetical protein yaaC
Length = 315
Score = 32.7 bits (73), Expect = 1.5
Identities = 32/120 (26%), Positives = 46/120 (38%), Gaps = 3/120 (2%)
Frame = +2
Query: 404 EKAIAYKAKNDAYLNKFIGNEKFYYGNICQTIFKKNYAFIHLESSNLKLFCHVSDIVRTC 583
EK NDA N F +E+F Y F K A+ LE + LF ++ +++ C
Sbjct: 23 EKVYILNGINDAKKNSFKNSERFIYFLKHAESFYKQAAYSPLEIKPILLFYGMAQLIKAC 82
Query: 584 Y---NPHVSFSFNQKLKFKISEDPSKPGKYRAVCIYDHSGVALDELDYFRNLYAISLKKH 754
+PH S L ++ K Y C D DE+ RN + KH
Sbjct: 83 LITRDPHYP-SHTSVLAHGVTTRKRKKQNY---CFSD------DEVKIQRNGLCVHFMKH 132
>sp|P21325|RT67_ECOLI Retron EC67 protein (ORF4-EC67 RT) [Includes: RNA-directed DNA
polymerase (Reverse transcriptase); Ribonuclease H
(RNase H)]
Length = 586
Score = 30.0 bits (66), Expect = 9.4
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Frame = +2
Query: 392 ATIEEKAIAYKAKNDAYLNKFIGNEKFYYGNICQTIFKKN-------YAFIH-LESSNLK 547
AT+ + A+ AY +KFI KF++GN C TI + A +H LE+S +
Sbjct: 338 ATLHGFKLKLNAREKAY-SKFI-YYKFFHGNTCPTIITEGKTDRIYLKAALHSLETSYPE 395
Query: 548 LFCHVSDIVRTCYNPHVSFSFNQKLKF 628
LF +D + N ++ F N+K K+
Sbjct: 396 LFREKTDSKKKEINLNI-FKSNEKTKY 421
>sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regeneration-related protein
LRRG202)
sp|P61205|ARF3_MOUSE ADP-ribosylation factor 3
sp|P61207|ARF3_FUGRU ADP-ribosylation factor 3
sp|Q5R5P7|ARF3_PONPY ADP-ribosylation factor 3
sp|P61204|ARF3_HUMAN ADP-ribosylation factor 3
Length = 181
Score = 30.0 bits (66), Expect = 9.4
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 101 RDSMIISFIRTNPSPNPTNALIPNKIIDKIKNFSMRHNN-STSSPAVTSGHNRYSSL 268
RD++++ F PN NA +I DK+ S+RH N + TSG Y L
Sbjct: 117 RDAVLLVFANKQDLPNAMNAA---EITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 170
>sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1
sp|P84079|ARF1_RAT ADP-ribosylation factor 1
sp|P84078|ARF1_MOUSE ADP-ribosylation factor 1
sp|P84077|ARF1_HUMAN ADP-ribosylation factor 1
sp|P84080|ARF1_BOVIN ADP-ribosylation factor 1
Length = 181
Score = 30.0 bits (66), Expect = 9.4
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 101 RDSMIISFIRTNPSPNPTNALIPNKIIDKIKNFSMRHNN-STSSPAVTSGHNRYSSL 268
RD++++ F PN NA +I DK+ S+RH N + TSG Y L
Sbjct: 117 RDAVLLVFANKQDLPNAMNAA---EITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 170
>sp|Q8NYF5|ESAA_STAAW Protein esaA
sp|Q6GCI9|ESAA_STAAS Protein esaA
Length = 1009
Score = 30.0 bits (66), Expect = 9.4
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Frame = +2
Query: 2 RLICRVLDLLLSKNFNFKPYDISSLEAGEFNLDRDSMIISFIRTNPSPNPTNALIPNKII 181
RLI ++D +++ +FK ++ L + + +I I N N +K+I
Sbjct: 612 RLIDMMVDQVINDMESFKDDKVAVLHQIDSMEENSDKLIDDILNNKKNTTKNKEDISKLI 671
Query: 182 DKIKNFSMRHNNSTSSPAVTSGHNRYSSLM--EIDAEESTISPPLVQ 316
D+++N P + G N + M +D E S IS Q
Sbjct: 672 DQLENVKKTFAEEPQEPKIDKGKNDEFNTMSSNLDKEISRISEKSTQ 718
>sp|Q6GK28|ESAA_STAAR Protein esaA
Length = 1009
Score = 30.0 bits (66), Expect = 9.4
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Frame = +2
Query: 2 RLICRVLDLLLSKNFNFKPYDISSLEAGEFNLDRDSMIISFIRTNPSPNPTNALIPNKII 181
RLI ++D +++ +FK ++ L + + +I I N N +K+I
Sbjct: 612 RLIDMMVDQVINDMESFKDDKVAVLHQIDSMEENSDKLIDDILNNKKNTTKNKEDISKLI 671
Query: 182 DKIKNFSMRHNNSTSSPAVTSGHNRYSSLM--EIDAEESTISPPLVQ 316
D+++N P + G N + M +D E S IS Q
Sbjct: 672 DQLENVKKTFAEEPQEPKIDKGKNDEFNTMSSNLDKEISRISEKSTQ 718
>sp|P0C049|ESAA_STAAU Protein esaA
sp|Q99WU3|ESAA_STAAM Protein esaA
sp|Q7A7S3|ESAA_STAAN Protein esaA
Length = 1009
Score = 30.0 bits (66), Expect = 9.4
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Frame = +2
Query: 2 RLICRVLDLLLSKNFNFKPYDISSLEAGEFNLDRDSMIISFIRTNPSPNPTNALIPNKII 181
RLI ++D +++ +FK ++ L + + +I I N N +K+I
Sbjct: 612 RLIDMMVDQVINDMESFKDDKVAVLHQIDSMEENSDKLIDDILNNKKNTTKNKEDISKLI 671
Query: 182 DKIKNFSMRHNNSTSSPAVTSGHNRYSSLM--EIDAEESTISPPLVQ 316
D+++N P + G N + M +D E S IS Q
Sbjct: 672 DQLENVKKTFAEEPQEPKIDKGKNDEFNTMSSNLDKEISRISEKSTQ 718
>sp|P51643|ARF1_XENLA ADP-ribosylation factor 1
Length = 181
Score = 30.0 bits (66), Expect = 9.4
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 101 RDSMIISFIRTNPSPNPTNALIPNKIIDKIKNFSMRHNN-STSSPAVTSGHNRYSSL 268
RD++++ F PN NA +I DK+ S+RH N + TSG Y L
Sbjct: 117 RDAVLLVFANKQDLPNAMNAA---EITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 170
>sp|Q5HJ90|ESAA_STAAC Protein esaA
Length = 1009
Score = 30.0 bits (66), Expect = 9.4
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Frame = +2
Query: 2 RLICRVLDLLLSKNFNFKPYDISSLEAGEFNLDRDSMIISFIRTNPSPNPTNALIPNKII 181
RLI ++D +++ +FK ++ L + + +I I N N +K+I
Sbjct: 612 RLIDMMVDQVINDMESFKDDKVAVLHQIDSMEENSDKLIDDILNNKKNTTKNKEDISKLI 671
Query: 182 DKIKNFSMRHNNSTSSPAVTSGHNRYSSLM--EIDAEESTISPPLVQ 316
D+++N P + G N + M +D E S IS Q
Sbjct: 672 DQLENVKKTFAEEPQEPKIDKGKNDEFNTMSSNLDKEISRISEKSTQ 718
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,591,737
Number of Sequences: 369166
Number of extensions: 2095056
Number of successful extensions: 5312
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5312
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9318621220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)