Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_H08
(942 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34422|YL31_CAEEL Hypothetical protein F44B9.1 in chromo... 57 1e-07
sp|P39839|YUXL_BACSU Probable peptidase yuxL 55 2e-07
sp|P13676|ACPH_RAT Acylamino-acid-releasing enzyme (AARE) (... 47 6e-05
sp|P13798|ACPH_HUMAN Acylamino-acid-releasing enzyme (AARE)... 46 1e-04
sp|P19205|ACPH_PIG Acylamino-acid-releasing enzyme (AARE) (... 46 2e-04
sp|Q8R146|APEH_MOUSE Acylamino-acid-releasing enzyme (AARE)... 45 2e-04
sp|Q9YBQ2|APEH_AERPE Acylamino-acid-releasing enzyme (AARE)... 42 0.002
sp|Q9UW98|DPP5_TRIRU Dipeptidyl-peptidase V precursor (DPP ... 41 0.004
sp|O13479|DPP5_ASPFU Dipeptidyl-peptidase V precursor (DPP ... 40 0.012
sp|Q8J1M3|DPP5_ARTBE Dipeptidyl-peptidase V precursor (DPP ... 37 0.062
>sp|P34422|YL31_CAEEL Hypothetical protein F44B9.1 in chromosome III
Length = 740
Score = 56.6 bits (135), Expect = 1e-07
Identities = 27/83 (32%), Positives = 44/83 (53%)
Frame = +2
Query: 692 LPDTLPPLLVLAHGGPTSAADLNLNLSIQYWTSRGFAVLDVDYRGSTGYGKEYRNLLKGN 871
+P ++VL HGGP + + + T+RG++VL V++RGSTG+GK N G
Sbjct: 424 IPAVPQKMIVLVHGGPKARDHYGFSPMNAWLTNRGYSVLQVNFRGSTGFGKRLTNAGNGE 483
Query: 872 WGIFDKVDCCEGANYLVSQKLVD 940
WG D + + VS+ + +
Sbjct: 484 WGRKMHFDILDAVEFAVSKGIAN 506
>sp|P39839|YUXL_BACSU Probable peptidase yuxL
Length = 657
Score = 55.5 bits (132), Expect = 2e-07
Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 10/221 (4%)
Frame = +2
Query: 296 IGG----PMWSLDYRTYYY---HEGENLLILAKAGGQLQIMKTDGSIERTLQLNPHITSI 454
IGG P+W+ D + +Y +G + G + ++ + + L+P
Sbjct: 301 IGGAEQRPIWTKDSQGFYVIGTDQGSTGIYYISIEGLVYPIRLEKEYINSFSLSP----- 355
Query: 455 AYPYLMQDGSIVVIGGSPDSSKTIYRI-FGDDKYEIVG-RDRIVEGIDPHYFSIPQRLNY 628
+ + PD +Y I G ++ ++ G D+ V H SIP+ + Y
Sbjct: 356 ------DEQHFIASVTKPDRPSELYSIPLGQEEKQLTGANDKFVR---EHTISIPEEIQY 406
Query: 629 PVPGGISY-AYYYPPCNPDYCGLPDTLPPLLVLAHGGPTSAADLNLNLSIQYWTSRGFAV 805
G+ + P + +T PL++ HGGP Q ++G+AV
Sbjct: 407 ATEDGVMVNGWLMRPAQME----GETTYPLILNIHGGPHMMYGHTYFHEFQVLAAKGYAV 462
Query: 806 LDVDYRGSTGYGKEYRNLLKGNWGIFDKVDCCEGANYLVSQ 928
+ ++ RGS GYG+E+ N ++G++G D D + + + +
Sbjct: 463 VYINPRGSHGYGQEFVNAVRGDYGGKDYDDVMQAVDEAIKR 503
>sp|P13676|ACPH_RAT Acylamino-acid-releasing enzyme (AARE) (Acyl-peptide hydrolase)
(APH) (Acylaminoacyl-peptidase)
Length = 732
Score = 47.4 bits (111), Expect = 6e-05
Identities = 33/77 (42%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +2
Query: 668 PCNPDYCGLPD-TLPPLLVLAHGGPTSAADLNLNLSIQYWTSRGFAVLDVDYRGSTGYGK 844
P NP PD T P++V+ HGGP S+ L GFAVL V+YRGSTG+G+
Sbjct: 491 PSNP-----PDKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQ 545
Query: 845 EYRNLLKGNWGIFDKVD 895
+ L GN G D D
Sbjct: 546 DSILSLPGNVGHQDVKD 562
>sp|P13798|ACPH_HUMAN Acylamino-acid-releasing enzyme (AARE) (Acyl-peptide hydrolase)
(APH) (Acylaminoacyl-peptidase) (Oxidized protein
hydrolase) (OPH) (DNF15S2 protein)
Length = 732
Score = 46.2 bits (108), Expect = 1e-04
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +2
Query: 695 PD-TLPPLLVLAHGGPTSAADLNLNLSIQYWTSRGFAVLDVDYRGSTGYGKEYRNLLKGN 871
PD T P++V+ HGGP S+ L GFAVL V+YRGSTG+G++ L GN
Sbjct: 495 PDKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGN 554
Query: 872 WGIFDKVD 895
G D D
Sbjct: 555 VGHQDVKD 562
>sp|P19205|ACPH_PIG Acylamino-acid-releasing enzyme (AARE) (Acyl-peptide hydrolase)
(APH) (Acylaminoacyl-peptidase)
Length = 732
Score = 45.8 bits (107), Expect = 2e-04
Identities = 28/65 (43%), Positives = 36/65 (55%)
Frame = +2
Query: 701 TLPPLLVLAHGGPTSAADLNLNLSIQYWTSRGFAVLDVDYRGSTGYGKEYRNLLKGNWGI 880
T P++V+ HGGP S+ L GFAVL V+YRGSTG+G++ L GN G
Sbjct: 498 TQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGH 557
Query: 881 FDKVD 895
D D
Sbjct: 558 QDVKD 562
>sp|Q8R146|APEH_MOUSE Acylamino-acid-releasing enzyme (AARE) (Acyl-peptide hydrolase)
(APH) (Acylaminoacyl-peptidase)
Length = 732
Score = 45.4 bits (106), Expect = 2e-04
Identities = 27/62 (43%), Positives = 35/62 (56%)
Frame = +2
Query: 710 PLLVLAHGGPTSAADLNLNLSIQYWTSRGFAVLDVDYRGSTGYGKEYRNLLKGNWGIFDK 889
P++V+ HGGP S+ L GFAVL V+YRGSTG+G++ L GN G D
Sbjct: 501 PMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDV 560
Query: 890 VD 895
D
Sbjct: 561 KD 562
>sp|Q9YBQ2|APEH_AERPE Acylamino-acid-releasing enzyme (AARE) (Acyl-peptide hydrolase)
(APH) (Acylaminoacyl-peptidase)
Length = 582
Score = 42.4 bits (98), Expect = 0.002
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +2
Query: 689 GLPDTLPPLLVLAHGGPTSAADLNLNLSIQYWTSRGFAVLDVDYRGSTGYGKEYRNLLKG 868
G T P +VL HGGP + + + + GF V+ +YRGSTGYG+E+R + G
Sbjct: 354 GRAPTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIG 413
Query: 869 N 871
+
Sbjct: 414 D 414
>sp|Q9UW98|DPP5_TRIRU Dipeptidyl-peptidase V precursor (DPP V) (DppV) (Allergen Tri r 4)
Length = 726
Score = 41.2 bits (95), Expect = 0.004
Identities = 44/198 (22%), Positives = 83/198 (41%), Gaps = 9/198 (4%)
Frame = +2
Query: 311 WSLDYRTYYYHEGENLLILAKAGGQLQIMKTDGSIERTLQLNPHITSIAYPYLMQDGSIV 490
WS D RT Y ++ A G+L + D + H S++ Y + V
Sbjct: 344 WSSDGRTLYVTAEDH------ATGKLFTLPADARDNHKPAVVKHDGSVSSFYFIGSSKSV 397
Query: 491 VIGGSPDSSKTIYRIFGDDK-----YEIVGRDRIVEGIDPHYFSIPQRLNYPVPGGIS-- 649
+I G+ S +Y++ D+ + D ++G+ P+ V G +
Sbjct: 398 LISGNSLWSNALYQVATPDRPNRKLFYANEHDPELKGLGPNDIE-----PLWVDGARTKI 452
Query: 650 YAYYYPPCNPDYCGLPDTLPPLLVLAHGGPTSAADLNLNL--SIQYWTSRGFAVLDVDYR 823
+++ P D + + PL L HGGP + N + + + W +G+ V+ +
Sbjct: 453 HSWIVKPTGFD----KNKVYPLAFLIHGGPQGSWGDNWSTRWNPRVWADQGYVVVAPNPT 508
Query: 824 GSTGYGKEYRNLLKGNWG 877
GSTG+G++ + + +WG
Sbjct: 509 GSTGFGQKLTDDITNDWG 526
>sp|O13479|DPP5_ASPFU Dipeptidyl-peptidase V precursor (DPP V) (DppV)
Length = 721
Score = 39.7 bits (91), Expect = 0.012
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +2
Query: 710 PLLVLAHGGPTS--AADLNLNLSIQYWTSRGFAVLDVDYRGSTGYGKEYRNLLKGNWG-- 877
PL+ HGGP A + + + W +G+ V+ + GSTG+G+ ++ NWG
Sbjct: 471 PLIFFIHGGPQGNWADGWSTRWNPKAWADQGYVVVAPNPTGSTGFGQALTTAIQNNWGGA 530
Query: 878 -IFDKVDCCE 904
D V C E
Sbjct: 531 PYDDLVKCWE 540
>sp|Q8J1M3|DPP5_ARTBE Dipeptidyl-peptidase V precursor (DPP V) (DppV) (Allergen Tri m 4)
Length = 726
Score = 37.4 bits (85), Expect = 0.062
Identities = 42/198 (21%), Positives = 80/198 (40%), Gaps = 9/198 (4%)
Frame = +2
Query: 311 WSLDYRTYYYHEGENLLILAKAGGQLQIMKTDGSIERTLQLNPHITSIAYPYLMQDGSIV 490
WS D RT Y ++ A G+L + D + H S++ Y + V
Sbjct: 344 WSSDGRTLYVTAEDH------ATGKLFTLPADARDNHKPSVVKHDGSVSSFYFIGSSKSV 397
Query: 491 VIGGSPDSSKTIYRIFGDDK-----YEIVGRDRIVEGIDPHYFSIPQRLNYPVPGGIS-- 649
+I G+ S +Y++ + + D ++G+ P V G +
Sbjct: 398 LISGNSLWSNALYQVATPGRPNRKLFYANEHDPELKGLGPKDIE-----PLWVDGARTKI 452
Query: 650 YAYYYPPCNPDYCGLPDTLPPLLVLAHGGPTSA--ADLNLNLSIQYWTSRGFAVLDVDYR 823
+++ P D + + PL L HGGP + + + + W +G+ V+ +
Sbjct: 453 HSWIVKPTGFD----KNKVYPLAFLIHGGPQGSWGDSWSTRWNPRVWADQGYVVVAPNPT 508
Query: 824 GSTGYGKEYRNLLKGNWG 877
GSTG+G++ + + +WG
Sbjct: 509 GSTGFGQKLTDDITNDWG 526
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,076,380
Number of Sequences: 369166
Number of extensions: 2669616
Number of successful extensions: 6788
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6784
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9750928390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)